BAC Information

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BAC

Clone NameB6Ng01-202F06
Chromosome5 (Build37)
Map Location 74,098,849 - 74,220,978
singlet/doubletdoublet
Overlap genenone
Upstream geneTxk, Tec, Slain2, Slc10a4, LOC667127, Fryl, Ociad1, Ociad2, LOC667154, LOC100042205, C130090K23Rik, LOC627733, Dcun1d4, BC031901, Sgcb, Spata18
Downstream geneUsp46, 2700023E23Rik, Rasl11b, Scfd2, Fip1l1, Lnx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-202F06.bB6Ng01-202F06.g
ACCGA022849GA022850
length9191,022
definitionB6Ng01-202F06.b B6Ng01-202F06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,220,071 - 74,220,978)(74,098,849 - 74,099,867)
sequence
gaattcaaaaatcatacacaaacatgcaaatggcacctttcctagttaca
aggctctctctctggactgcttcaggtctgaggttttcccttggtcattc
tttctcccgcgtctggagaaacagagtccgaccccatgctgaagcgtcat
gcccagggaaggaggaaccacggaataaccaggggtggggggtgggtcgg
gtagaacctctgggaagtcaggcttctcactgaaaagcatctgcttgctc
aactcccaggatgctgcttgttcatgaacaaattcttccaagctggctat
gataggctatgacctgtaaatataaaccaaacaagtccttccctccctta
agttctctgtggtcaatatttatcacagcaacaaaatgaaaattagaaca
accactaaaactttaccaaagccacatgtcatataagaagatggctgtac
ccagccctgccattaggtctttagctaactctgcacaagccacttacact
gccttagatcccaatgtggctcagacgctgtagtgctttgaatgaagact
atcccccataggcttgggtatctcgaaacttggtttgcagtttggtggcg
ctgtttgggaaggtttaggtggtgcagctatgctggaggaaaacatcact
aggcgaagacttcgagattatataacctcaccccacttccagtttccctg
tctctgcactgtatttgcagcaggggatgtaagcacttaacaaactttaa
gggggaaggatgtatctgggttacagttaaagggttttaatccatcatga
ttgagcaggatctaataagcatgctggttacattatatcccacacccaac
gaagcagaaagtatggaatgctgtgccttagcctcattcttttcctttgt
ttacattggcccagtatcc
gaattcttgattctccgagttcttgggcagaggcttcaaaaactgaactg
tcgttaaaacgctgtccttgttcccatctgccatttgtctcgccgttttc
tgattcatctacccttctggaatgtcctgtgaatacctcagcagagttga
acacagggtgattcctctcgtccacatgcatgtagaataaatctttaatt
tcatttcaatggcagagaccaaagctagcatccaaaacgaatgggtgtct
ttgaataaacacttagtgtaggtttccagtgtgtgggagcctgggcttcc
tcagttgctgctcatcagaatgaaagccaaggccccttaaagtcaggctt
ctgggatacgggaatggtcattacgtttaattttctttgagcatgccgaa
aggttttccctcatgtacacacacacacacacacacacacacacacacac
acacacacacacactttaaaaagtagttagaagggagagagctctgatgg
ttaaataatgctgttgttaaaagccactgtttggggctggagtcatggct
tagtggttgggaggaccggctgctcctctagaggacttactttcaatttc
cagcaccaacaaggcagcttgcatctttttacaactccagttttgtggga
tccatggcaccaggcacgcatgtggtatacacatatatgcacacagggaa
aatattcatatatataaaataaaataaatatattttttttgaaaagccac
tgttctttagataaaattaccagtgccaggtgcagaatgcccccttgtga
gctgttgatcaaggaggaaccacagacctccaaacaccaaagactattgt
tatttttaattgcccatcagaattagatggtaaccccgctcccttcagtc
tcaagatagagtgaaatcaaactggaaactaatttctttggatgggtagc
tttcatagtgtcagaaaaggcaataccaggttgccttgggagataagggc
atcaagggtctacccagttcga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_74220071_74220978
seq2: B6Ng01-202F06.b_48_966 (reverse)

seq1  GGATCCTGGGCC-ATGTAAAC-AAGGAAAAAATTGA-GCTAA-GCACAAG  46
      |||| ||||||| |||||||| |||||||| | ||| ||||| |||| ||
seq2  GGATACTGGGCCAATGTAAACAAAGGAAAAGAATGAGGCTAAGGCAC-AG  49

seq1  CATTCATTACTTTCTGCTTC-CTGGGTGT-GGATATAATGTAACCAGC-T  93
      |||||  |||||||||||||  ||||||| |||||||||||||||||| |
seq2  CATTCCATACTTTCTGCTTCGTTGGGTGTGGGATATAATGTAACCAGCAT  99

seq1  GCTT-TTAGCTCCTGACTCACTCATGATGGATT-AAACCCTTTAACTGTG  141
      |||| |||| ||||| |||| |||||||||||| ||||||||||||||| 
seq2  GCTTATTAGATCCTG-CTCAATCATGATGGATTAAAACCCTTTAACTGTA  148

seq1  AACCAGATACATCCTTCCCCCTTAA--GTTGTTAAGTGCTTACATCCCCT  189
      | |||||||||||||||||||||||   ||||||||||||||||||||||
seq2  ACCCAGATACATCCTTCCCCCTTAAAGTTTGTTAAGTGCTTACATCCCCT  198

seq1  GCTGCAAATACAGTGCAGAGACAGGG-AACTGGAAGTGGGGTGAGGTTAT  238
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GCTGCAAATACAGTGCAGAGACAGGGAAACTGGAAGTGGGGTGAGGTTAT  248

seq1  ATAATCTCGAAGTCTTCGCCTAGTGATGTTTTCCTCCAGCATAGCTGCAC  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCTCGAAGTCTTCGCCTAGTGATGTTTTCCTCCAGCATAGCTGCAC  298

seq1  CACCTAAACCTTCCCAAACAGCGCCACC-AACTGCAAACCAAGTTTCGAG  337
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CACCTAAACCTTCCCAAACAGCGCCACCAAACTGCAAACCAAGTTTCGAG  348

seq1  ATACCCAAGCCTATGGGGGATAGTCTTCATTCAAAGCACTACAGCGTCTG  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCAAGCCTATGGGGGATAGTCTTCATTCAAAGCACTACAGCGTCTG  398

seq1  AGCCACATTGGGATCTAAGGCAGTGTAAGTGGCTTGTGCAGAGTTAGCTA  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACATTGGGATCTAAGGCAGTGTAAGTGGCTTGTGCAGAGTTAGCTA  448

seq1  AAGACCTAATGGCAGGGCTGGGTACAGCCATCTTCTTATATGACATGTGG  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCTAATGGCAGGGCTGGGTACAGCCATCTTCTTATATGACATGTGG  498

seq1  CTTTGGTAAAGTTTTAGTGGTTGTTCTAATTTTCATTTTGTTGCTGTGAT  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGTAAAGTTTTAGTGGTTGTTCTAATTTTCATTTTGTTGCTGTGAT  548

seq1  AAATATTGACCACAGAGAACTTAAGGGAGGGAAGGACTTGTTTGGTTTAT  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTGACCACAGAGAACTTAAGGGAGGGAAGGACTTGTTTGGTTTAT  598

seq1  ATTTACAGGTCATAGCCTATCATAGCCAGCTTGGAAGAATTTGTTCATGA  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACAGGTCATAGCCTATCATAGCCAGCTTGGAAGAATTTGTTCATGA  648

seq1  ACAAGCAGCATCCTGGGAGTTGAGCAAGCAGATGCTTTTCAGTGAGAAGC  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCAGCATCCTGGGAGTTGAGCAAGCAGATGCTTTTCAGTGAGAAGC  698

seq1  CTGACTTCCCAGAGGTTCTACCCGACCCACCCCCCACCCCTGGTTATTCC  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTTCCCAGAGGTTCTACCCGACCCACCCCCCACCCCTGGTTATTCC  748

seq1  GTGGTTCCTCCTTCCCTGGGCATGACGCTTCAGCATGGGGTCGGACTCTG  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTCCTCCTTCCCTGGGCATGACGCTTCAGCATGGGGTCGGACTCTG  798

seq1  TTTCTCCAGACGCGGGAGAAAGAATGACCAAGGGAAAACCTCAGACCTGA  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCAGACGCGGGAGAAAGAATGACCAAGGGAAAACCTCAGACCTGA  848

seq1  AGCAGTCCAGAGAGAGAGCCTTGTAACTAGGAAAGGTGCCATTTGCATGT  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTCCAGAGAGAGAGCCTTGTAACTAGGAAAGGTGCCATTTGCATGT  898

seq1  TTGTGTATGATTTTTGAATTC  908
      |||||||||||||||||||||
seq2  TTGTGTATGATTTTTGAATTC  919

seq1: chr5_74098849_74099867
seq2: B6Ng01-202F06.g_69_1090

seq1  GAATTCTTGATTCTCCGAGTTCTTGGGCAGAGGCTTCAAAAACTGAACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGATTCTCCGAGTTCTTGGGCAGAGGCTTCAAAAACTGAACTG  50

seq1  TCGTTAAAACGCTGTCCTTGTTCCCATCTGCCATTTGTCTCGCCGTTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTAAAACGCTGTCCTTGTTCCCATCTGCCATTTGTCTCGCCGTTTTC  100

seq1  TGATTCATCTACCCTTCTGGAATGTCCTGTGAATACCTCAGCAGAGTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCATCTACCCTTCTGGAATGTCCTGTGAATACCTCAGCAGAGTTGA  150

seq1  ACACAGGGTGATTCCTCTCGTCCACATGCATGTAGAATAAATCTTTAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGGTGATTCCTCTCGTCCACATGCATGTAGAATAAATCTTTAATT  200

seq1  TCATTTCAATGGCAGAGACCAAAGCTAGCATCCAAAACGAATGGGTGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCAATGGCAGAGACCAAAGCTAGCATCCAAAACGAATGGGTGTCT  250

seq1  TTGAATAAACACTTAGTGTAGGTTTCCAGTGTGTGGGAGCCTGGGCTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATAAACACTTAGTGTAGGTTTCCAGTGTGTGGGAGCCTGGGCTTCC  300

seq1  TCAGTTGCTGCTCATCAGAATGAAAGCCAAGGCCCCTTAAAGTCAGGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTGCTGCTCATCAGAATGAAAGCCAAGGCCCCTTAAAGTCAGGCTT  350

seq1  CTGGGATACGGGAATGGTCATTACGTTTAATTTTCTTTGAGCATGCCGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATACGGGAATGGTCATTACGTTTAATTTTCTTTGAGCATGCCGAA  400

seq1  AGGTTTTCCCTCATGTACACACACACACACACACACACACACACACACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTTCCCTCATGTACACACACACACACACACACACACACACACACAC  450

seq1  ACACACACACACACTTTAAAAAGTAGTTAGAAGGGAGAGAGCTCTGATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACTTTAAAAAGTAGTTAGAAGGGAGAGAGCTCTGATGG  500

seq1  TTAAATAATGCTGTTGTTAAAAGCCACTGTTTGGGGCTGGAGTCATGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAATGCTGTTGTTAAAAGCCACTGTTTGGGGCTGGAGTCATGGCT  550

seq1  TAGTGGTTGGGAGGACCGGCTGCTCCTCTAGAGGACTTACTTTCAATTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGTTGGGAGGACCGGCTGCTCCTCTAGAGGACTTACTTTCAATTTC  600

seq1  CAGCACCAACAAGGCAGCTTGCATCTTTTTACAACTCCAGTTTTGTGGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACCAACAAGGCAGCTTGCATCTTTTTACAACTCCAGTTTTGTGGGA  650

seq1  TCCATGGCACCAGGCACGCATGTGGTATACACATATATGCACACAGGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGGCACCAGGCACGCATGTGGTATACACATATATGCACACAGGGAA  700

seq1  AATATTCATATATATAAAATAAAATAAATATA-TTTTTTTGAAAAGCCAC  749
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AATATTCATATATATAAAATAAAATAAATATATTTTTTTTGAAAAGCCAC  750

seq1  TGTTCTTTAGATAAAATTACCAGTGCCAGGTGCAGAATGCCCCCTTGTGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTTAGATAAAATTACCAGTGCCAGGTGCAGAATGCCCCCTTGTGA  800

seq1  GCTGTTGATCAAGGAGGAACCACAGACCTCCAAACACCAAAGACTATTGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTGATCAAGGAGGAACCACAGACCTCCAAACACCAAAGACTATTGT  850

seq1  TATTTTTAATTGCCCATCAGAATTAGATGGTAACCCCGCTCCCTTCAGTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTAATTGCCCATCAGAATTAGATGGTAACCCCGCTCCCTTCAGTC  900

seq1  TCAAGATAGAGTGAAATCAAACTGG-AACTAATTTCTTTTGGATGGGTAG  948
      ||||||||||||||||||||||||| |||||||||| |||||||||||||
seq2  TCAAGATAGAGTGAAATCAAACTGGAAACTAATTTC-TTTGGATGGGTAG  949

seq1  CTTTCATAGTGTCAGAAAA-GCAATA-CAGGTTG-CTTGGGAGATAAGGG  995
      ||||||||||||||||||| |||||| ||||||| |||||||||||||||
seq2  CTTTCATAGTGTCAGAAAAGGCAATACCAGGTTGCCTTGGGAGATAAGGG  999

seq1  CATCAAGGGTCTTAACCAGTTCGA  1019
      ||||||||||| || |||||||||
seq2  CATCAAGGGTC-TACCCAGTTCGA  1022