BAC Information

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BAC

Clone NameB6Ng01-202K03
Chromosome5 (Build37)
Map Location 107,949,206 - 107,950,358
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666892, LOC100042389, Zfp644, LOC100042400, EG666922, Hfm1, Cdc7, Tgfbr3, LOC666518, Brdt, LOC666535, Abhd7, 4921521K07Rik, LOC72342
Downstream gene1700028K03Rik, Glmn, AW060207, Gfi1, LOC100042473, Evi5, 1700013N18Rik, Rpl5, 2900024C23Rik, LOC675566, Mtf2, Tmed5, Ccdc18, EG633606, LOC666614, Dr1, Pigg, Pde6b, Atp5k, Mfsd7, Pcgf3, LOC100042557, Cplx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-202K03.bB6Ng01-202K03.g
ACCGA023076GA023077
length1,2401,149
definitionB6Ng01-202K03.b B6Ng01-202K03.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctacatcctgctccacagatacttacttgttcagccatgctcact
gtcactgtattcacaatagctacaaaactcaagcaatctaagtgtctgtt
agctgaaacctagccaactacccagggttagtgaggccatgatcttacag
gagaacatattactgctactttactaaaccaacatggtccctaaatacat
cctaaatacttctactcatacataagtatagtgtctcattcctcaccaaa
gaaacttttctttgcagtagatggaaaccagtaaagaaaaccccaagtac
tcaaagttcaacaagcaatgcactatggggtgcctagcccagatatacca
ccaatacaactcctgagcaaggctcagggaacatcttggaagaaggcatg
gggaggtgatagaagctggaagaccaggagggattgtatctactagaaat
aacggtgcagcttcaaccatgattcttcaacaatatggctgcctaaagaa
gaccagaataaaggcagcagcaatagacatgctaacacagaaggggaaag
acactgttgagagggatcccagagagggagggagagaacgaaggaactag
tcctctccaaggatgagcctctcaactggttatccaatatcaagtagtca
gccctgaaagcatatacatacaagcaaccctaaatgaatccagcaggttg
tatgtatgtatgtatgtgagtgattatacaacaataaaaaaagaggtcat
gaatttgagaggaggaagtcatgtaattgcttttgagatggctactcacg
caaatcaccattaagattgaacaacctgagttcaatctctgggaatcaca
tggtaggaggagaaaacctactccaaaaaggtgtcttctgatctccacca
gtaatgtaatataatcaaatataaaaatgatataaacaccacagtaagag
ttaatttaatttacctggacccttggggactctcacagactaaactacca
aacaaagagcatggacctacacctcctggcaacatatgtagcaaatttta
tcgcttgtcttcattgttggggttcccctaacactggaagacaggagaat
tgttccttaaatcagttggctgcctgtggaatcccttttcccctaaattg
aacctgcctgtttgcctcatgggaaaggaatgcacctagcagatgcgagg
tattccaggctctcctcatctttctaaagacacagaagtg
gaattccaagcccagggtcgggtcaatgactacctaggacattggtgaag
gccaggaagcaaagttcgattttgcttaggcatttggcaagtcattgctt
ggaggcacctataacaaaacaatactgaaaggaagcacacagatccattc
acaaggacaaaattggagcatgcaggctatggaatgccacagttccagga
gactaagtttccgtgaaactcttcgcctcaggcctatcatgcatgtcact
actggagtggacgtagcactttctgttctgagacagggcctcactaagtc
gttcaggccagccttgaactcaccatgcagctcaggctagcactgagctt
ctgatcctctttgtctcggcgtctttactaactggaattataggtctttg
tcgctaagctccatttctaatttttattcttttattctttttccttttga
gcctgggtctcactactcacctcttctggcccgtttgttctttagcacag
gcaggccttggactcatgttcctcctgcttcttcctcctggacaatatgg
taaaatattgtctcaaaataaatgggaggaggcttgagagcacatggtgc
ctatgaggcacttgcagaacgctgaaggcggttttctctctccatttcat
gtgtgagggtgtgtgaggtgtgcatatgcatctggagctccctcccccag
gttgatgttgggaatcatctacaatcccttttccatctcagtcagtgagg
cagggtctcttaatcaaacccagaactttagatgtagctaccagctggcc
agcttgtccttcggattccacctctgcatttgctgggtttgggaatccaa
gctagcagcacttaggtttgcatgggccagctcctaacacagccatctcc
tcagcccccagaaagccttcttcttcttcttcttttttttttttttttat
atgagtgaaatgccaacaaactatgggaccagcagaggcattacactgga
aaatgcaggcagccacaatgtgatgagccccacacaaggactagcacagc
catcctgggcacacgtgaggtttctccaaacaggccacacatccatgtta
accatgttattaagatgctcacgctcctagcagaaagcccgaatctggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_107949206_107950358
seq2: B6Ng01-202K03.g_64_1212

seq1  GAATTCCAAGCCCAGGGTCGGGTCAATGACTACCTAGGACATTGGTGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGCCCAGGGTCGGGTCAATGACTACCTAGGACATTGGTGAAG  50

seq1  GCCAGGAAGCAAAGTTCGATTTTGCTTAGGCATTTGGCAAGTCATTGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGAAGCAAAGTTCGATTTTGCTTAGGCATTTGGCAAGTCATTGCTT  100

seq1  GGAGGCACCTATAACAAAACAATACTGAAAGGAAGCACACAGATCCATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCACCTATAACAAAACAATACTGAAAGGAAGCACACAGATCCATTC  150

seq1  ACAAGGACAAAATTGGAGCATGCAGGCTATGGAATGCCACAGTTCCAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGACAAAATTGGAGCATGCAGGCTATGGAATGCCACAGTTCCAGGA  200

seq1  GACTAAGTTTCCGTGAAACTCTTCGCCTCAGGCCTATCATGCATGTCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAGTTTCCGTGAAACTCTTCGCCTCAGGCCTATCATGCATGTCACT  250

seq1  ACTGGAGTGGACGTAGCACTTTCTGTTCTGAGACAGGGCCTCACTAAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGTGGACGTAGCACTTTCTGTTCTGAGACAGGGCCTCACTAAGTC  300

seq1  GTTCAGGCCAGCCTTGAACTCACCATGCAGCTCAGGCTAGCACTGAGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGGCCAGCCTTGAACTCACCATGCAGCTCAGGCTAGCACTGAGCTT  350

seq1  CTGATCCTCTTTGTCTCGGCGTCTTTACTAACTGGAATTATAGGTCTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCCTCTTTGTCTCGGCGTCTTTACTAACTGGAATTATAGGTCTTTG  400

seq1  TCGCTAAGCTCCATTTCTAATTTTTATTCTTTTATTCTTTTTCCTTTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTAAGCTCCATTTCTAATTTTTATTCTTTTATTCTTTTTCCTTTTGA  450

seq1  GCCTGGGTCTCACTACTCACCTCTTCTGGCCCGTTTGTTCTTTAGCACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGGTCTCACTACTCACCTCTTCTGGCCCGTTTGTTCTTTAGCACAG  500

seq1  GCAGGCCTTGGACTCATGTTCCTCCTGCTTCTTCCTCCTGGACAATATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCCTTGGACTCATGTTCCTCCTGCTTCTTCCTCCTGGACAATATGG  550

seq1  TAAAATATTGTCTCAAAATAAATGGGAGGAGGCTTGAGAGCACATGGTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATTGTCTCAAAATAAATGGGAGGAGGCTTGAGAGCACATGGTGC  600

seq1  CTATGAGGCACTTGCAGAACGCTGAAGGCGGTTTTCTCTCTCCATTTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAGGCACTTGCAGAACGCTGAAGGCGGTTTTCTCTCTCCATTTCAT  650

seq1  GTGTGAGGGTGTGTGAGGTGTGCATATGCATCTGGAGCTCCCTCCCCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAGGGTGTGTGAGGTGTGCATATGCATCTGGAGCTCCCTCCCCCAG  700

seq1  GTTGATGTTGGGAATCATCTACAATCCCTTTTCCATCTCAGTCAGTGAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATGTTGGGAATCATCTACAATCCCTTTTCCATCTCAGTCAGTGAGG  750

seq1  CAGGGTCTCTTAATCAAACCCAGAACTTTAGATGTAGCTACCAGCTGGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTCTCTTAATCAAACCCAGAACTTTAGATGTAGCTACCAGCTGGCC  800

seq1  AGCTTGTCCTTCGGATTCCACCTCTGCATTTGCTGGGTTTGGGAATCCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGTCCTTCGGATTCCACCTCTGCATTTGCTGGGTTTGGGAATCCAA  850

seq1  GCTAGCAGCACTTAGGTTTGCAT-GGCCAGCTCCTAACACAGCCATCTCC  899
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GCTAGCAGCACTTAGGTTTGCATGGGCCAGCTCCTAACACAGCCATCTCC  900

seq1  TCAGCCCCCAGAAAGCCTTCTTCTTCTTCTTCTTTTTTTTTTTTTTTTAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCCCCAGAAAGCCTTCTTCTTCTTCTTCTTTTTTTTTTTTTTTTAT  950

seq1  ATGAGTGAAATGCCAACAAACTAT-GGACCAGCAGAGGCAATAACACTGG  998
      |||||||||||||||||||||||| |||||||||||||| || |||||||
seq2  ATGAGTGAAATGCCAACAAACTATGGGACCAGCAGAGGC-ATTACACTGG  999

seq1  AAAATGCAGGCAGCCACAATGTGATGAGCCCCACACAAGGACTAGCACAA  1048
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AAAATGCAGGCAGCCACAATGTGATGAGCCCCACACAAGGACTAGCAC-A  1048

seq1  GCCAT-CTGGGCAAACACGTGAAGGGTTCT-CAAACAGGCCAACACATCC  1096
      ||||| ||||||  ||||||| ||| |||| |||||||||| |||||| |
seq2  GCCATCCTGGGC--ACACGTG-AGGTTTCTCCAAACAGGCC-ACACAT-C  1093

seq1  CATG-TAACACTGTTTATTAAGATGCCTCA-GCTCCTAGCAGGAAAGCAG  1144
      |||| ||||  || ||||||||||| |||| |||||||||| ||||||  
seq2  CATGTTAACCATG-TTATTAAGATG-CTCACGCTCCTAGCA-GAAAGCCC  1140

seq1  GAATCTGGT  1153
      |||||||||
seq2  GAATCTGGT  1149