BAC Information

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BAC

Clone NameB6Ng01-202N10
Chromosome5 (Build37)
Map Location 41,168,479 - 41,275,755
singlet/doubletdoublet
Overlap genenone
Upstream geneEG665839, LOC100040502
Downstream geneLOC208522, Rab28, Bapx1, A230054D04Rik, LOC384308
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-202N10.bB6Ng01-202N10.g
ACCGA023221GA023222
length1,2021,131
definitionB6Ng01-202N10.b B6Ng01-202N10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,274,561 - 41,275,755)(41,168,479 - 41,169,614)
sequence
gaattctccctcccaggctcccttcagtttgtataaagttaaagatgaag
ctttaaggactctctgagactcctgagttagtcacttccctaagccttga
aacttttgcttacttccttcactttgatgaggttttctccagcgcagaat
gtttccattaggaagaaattgctgcacaacacaccaacaagttattctca
ctagcagagaaaagttagaacgaaaaataagatgatgaaataaagagtca
cacgttttaatgaatgcatgaattagtctggtacaataaattgaacttga
gaggcaatgtttttgcaattattaatctcaagatttaggatagatgtggt
taggtgtatatgtgtgtcctatttacaggacaacatttttttaaaataaa
attttgcttgttctgtgaatataaagcttttatgactataccaagtctct
gaaaattccattttagagttgaatagtcaagtaatgtacaaaccgtgata
tcatatttcaagaactcactccagcaaacgttgatgatactaattagaga
tttgtagctgtttgagaaagttgggattagcagaaaattatgagaaaatt
aactttattggcatggtgcttccagtgaaagaattctgttgaatgcaaaa
ttctagggttgataaggtgaaatgagttacctgctccagctgggatcagg
gatccttttatgcccaagtaatatttttggatgcttgaaaacatttcagt
atgctgcatatgtatgttgttaatatttcattaaaagaatgcttccccct
gcattcccagatccatcaaaattagtttaggagtacatgtaaataaacac
atattacttgcttcaagacccagagtaactagatgacttgtccaaagtca
tatatgtactatgttcgaagcaaaagttagaacatactgcccatttagcc
ccgagctttttcctctgcattttcctccctcccttctgggttcactttac
catccctttgttttaaatgaatgtgctaggaacgtttgtacaagtccaac
acagcttcagtcctattttgcaggagtttcagcccttattgtccaactga
tctcttgtccagaggcaattgcattcaagtgggaatatcttgaatccaat
tcgaatgcctggtgtcctatgtcagtgttacaattggaaccctctctcac
tg

gaattcattcatctctaagtttgatcccacaagcaaaatctctctctctc
tctctctctctctctctctctcacacacacacgcacatatctgtctgttt
ctctcataatatgtttattctatgtcatatttatagctacataggtataa
agagttattcttaaatccttcttattttgaaaatcaataaaaatatcgca
aagtatttaaaatgtattttaatattctttctattagtttgaaaggtaaa
accacatgagatatattattaaatgactaactgtatctgattaaatatag
aaaagtaagaaccattgttttttatgtttgcttgtaatgtttttcatgtt
ttccctcaagaaggttatgaaataagtatgtatacaatgtaaaatgtaac
acacgacaagccctttcttactgttagttttcatatatgtttgatcactt
ggtaaaagtaacttttcaaaagatcaggcttaaatatgtttatacctgca
cgaaatcaaatgcaacactaattttgcaagacataataaggtgagcattg
aaagtaatcattttaggctctgtgcacctgacacgctgagccaaatatgt
gacatgagaaaaaatgcagaagacctgatggagcttgttttatttttttt
attggaaattattaatgaaaaacctgcagaatggaggttgacacttctgc
ccaggagtcatagacaattaggagctctgagatgtaggaggtttgtacgc
tctcaaactttcctcttccacttctagaaattttagctttgcattctgaa
gaccaccatcaggtaataattcggtaagtatttaagttaagcccgggtaa
agcataggttatcatcctatggatatttgtaaacatccccagacttcaga
gtagtgatagattctgtctgaggctcaagtacaaaccaatgtaatttaac
tccctcacatgcttacccctctgaactatattaaaccttggattttctga
tgctaaaatcgtgatatttccatcagctgcaagtcctgtacttgagagaa
aagatcctcttttttgtcattactctgttcataacagaaaaaacattggt
aatcatcgtatttccaatttatttaaagcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_41274561_41275755
seq2: B6Ng01-202N10.b_50_1251 (reverse)

seq1  CAGTGAG-GAGGGT--CAATTGTAACAC--GCATA-GACACCAGGCATTC  44
      ||||||| ||||||  ||||||||||||   |||| ||||||||||||||
seq2  CAGTGAGAGAGGGTTCCAATTGTAACACTGACATAGGACACCAGGCATTC  50

seq1  CGATT-GATTCAGATTATCCCCAC-TGATTGCATTTGCCCTCTGGAACAG  92
        ||| ||||||   ||| ||||| ||| |||| ||| ||||||||  ||
seq2  GAATTGGATTCAAGATATTCCCACTTGAATGCAATTG-CCTCTGGACAAG  99

seq1  AGATCAGGTGGGACAATTAAAGGCTG-AACT-CTGCAAATAGGGACTGAA  140
      |||||| || |||||| ||| ||||| |||| |||||||   ||||||||
seq2  AGATCA-GTTGGACAA-TAAGGGCTGAAACTCCTGCAAAATAGGACTGAA  147

seq1  GCTGTGTTGGAC-TGTAC-AACGTTCCTAAGCACCATTCATTTAAAAACA  188
      |||||||||||| ||||| ||||||||| |||| |||||||||||||  |
seq2  GCTGTGTTGGACTTGTACAAACGTTCCT-AGCA-CATTCATTTAAAACAA  195

seq1  AAGGATGGTAAAGTGAACCCAGAAGGGAGGGAGGAAAATGCAGAGGAAAA  238
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATGGTAAAGTGAACCCAGAAGGGAGGGAGGAAAATGCAGAGGAAAA  245

seq1  AGCTCGGGGCTAAATGGGCAGTATGTTCTAACTTTTGCTTCGAACATAGT  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCGGGGCTAAATGGGCAGTATGTTCTAACTTTTGCTTCGAACATAGT  295

seq1  ACATATATGACTTTGGACAAGTCATCTAGTTACTCTGGGTCTTGAAGCAA  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATATGACTTTGGACAAGTCATCTAGTTACTCTGGGTCTTGAAGCAA  345

seq1  GTAATATGTGTTTATTTACATGTACTCCTAAACTAATTTTGATGGATCTG  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATATGTGTTTATTTACATGTACTCCTAAACTAATTTTGATGGATCTG  395

seq1  GGAATGCAGGGGGAAGCATTCTTTTAATGAAATATTAACAACATACATAT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGCAGGGGGAAGCATTCTTTTAATGAAATATTAACAACATACATAT  445

seq1  GCAGCATACTGAAATGTTTTCAAGCATCCAAAAATATTACTTGGGCATAA  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCATACTGAAATGTTTTCAAGCATCCAAAAATATTACTTGGGCATAA  495

seq1  AAGGATCCCTGATCCCAGCTGGAGCAGGTAACTCATTTCACCTTATCAAC  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATCCCTGATCCCAGCTGGAGCAGGTAACTCATTTCACCTTATCAAC  545

seq1  CCTAGAATTTTGCATTCAACAGAATTCTTTCACTGGAAGCACCATGCCAA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAATTTTGCATTCAACAGAATTCTTTCACTGGAAGCACCATGCCAA  595

seq1  TAAAGTTAATTTTCTCATAATTTTCTGCTAATCCCAACTTTCTCAAACAG  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTTAATTTTCTCATAATTTTCTGCTAATCCCAACTTTCTCAAACAG  645

seq1  CTACAAATCTCTAATTAGTATCATCAACGTTTGCTGGAGTGAGTTCTTGA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAATCTCTAATTAGTATCATCAACGTTTGCTGGAGTGAGTTCTTGA  695

seq1  AATATGATATCACGGTTTGTACATTACTTGACTATTCAACTCTAAAATGG  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGATATCACGGTTTGTACATTACTTGACTATTCAACTCTAAAATGG  745

seq1  AATTTTCAGAGACTTGGTATAGTCATAAAAGCTTTATATTCACAGAACAA  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCAGAGACTTGGTATAGTCATAAAAGCTTTATATTCACAGAACAA  795

seq1  GCAAAATTTTATTTTAAAAAAATGTTGTCCTGTAAATAGGACACACATAT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAATTTTATTTTAAAAAAATGTTGTCCTGTAAATAGGACACACATAT  845

seq1  ACACCTAACCACATCTATCCTAAATCTTGAGATTAATAATTGCAAAAACA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTAACCACATCTATCCTAAATCTTGAGATTAATAATTGCAAAAACA  895

seq1  TTGCCTCTCAAGTTCAATTTATTGTACCAGACTAATTCATGCATTCATTA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTCTCAAGTTCAATTTATTGTACCAGACTAATTCATGCATTCATTA  945

seq1  AAACGTGTGACTCTTTATTTCATCATCTTATTTTTCGTTCTAACTTTTCT  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGTGTGACTCTTTATTTCATCATCTTATTTTTCGTTCTAACTTTTCT  995

seq1  CTGCTAGTGAGAATAACTTGTTGGTGTGTTGTGCAGCAATTTCTTCCTAA  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAGTGAGAATAACTTGTTGGTGTGTTGTGCAGCAATTTCTTCCTAA  1045

seq1  TGGAAACATTCTGCGCTGGAGAAAACCTCATCAAAGTGAAGGAAGTAAGC  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAACATTCTGCGCTGGAGAAAACCTCATCAAAGTGAAGGAAGTAAGC  1095

seq1  AAAAGTTTCAAGGCTTAGGGAAGTGACTAACTCAGGAGTCTCAGAGAGTC  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTTCAAGGCTTAGGGAAGTGACTAACTCAGGAGTCTCAGAGAGTC  1145

seq1  CTTAAAGCTTCATCTTTAACTTTATACAAACTGAAGGGAGCCTGGGAGGG  1188
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAGCTTCATCTTTAACTTTATACAAACTGAAGGGAGCCTGGGAGGG  1195

seq1  AGAATTC  1195
      |||||||
seq2  AGAATTC  1202


seq1: chr5_41168479_41169614
seq2: B6Ng01-202N10.g_67_1197

seq1  GAATTCATTCATCTCTAAGTTTGATCCCACAAGCAAAATCTCTCTCTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCATCTCTAAGTTTGATCCCACAAGCAAAATCTCTCTCTCTC  50

seq1  TCTCTCTCTCTCTCTCTCTCTCACACACACACGCACATATCTGTCTGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCACACACACACGCACATATCTGTCTGTTT  100

seq1  CTCTCATAATATGTTTATTCTATGTCATATTTATAGCTACATAGGTATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCATAATATGTTTATTCTATGTCATATTTATAGCTACATAGGTATAA  150

seq1  AGAGTTATTCTTAAATCCTTCTTATTTTGAAAATCAATAAAAATATCGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTATTCTTAAATCCTTCTTATTTTGAAAATCAATAAAAATATCGCA  200

seq1  AAGTATTTAAAATGTATTTTAATATTCTTTCTATTAGTTTGAAAGGTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTTAAAATGTATTTTAATATTCTTTCTATTAGTTTGAAAGGTAAA  250

seq1  ACCACATGAGATATATTATTAAATGACTAACTGTATCTGATTAAATATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACATGAGATATATTATTAAATGACTAACTGTATCTGATTAAATATAG  300

seq1  AAAAGTAAGAACCATTGTTTTTTATGTTTGCTTGTAATGTTTTTCATGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTAAGAACCATTGTTTTTTATGTTTGCTTGTAATGTTTTTCATGTT  350

seq1  TTCCCTCAAGAAGGTTATGAAATAAGTATGTATACAATGTAAAATGTAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCAAGAAGGTTATGAAATAAGTATGTATACAATGTAAAATGTAAC  400

seq1  ACACGACAAGCCCTTTCTTACTGTTAGTTTTCATATATGTTTGATCACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGACAAGCCCTTTCTTACTGTTAGTTTTCATATATGTTTGATCACTT  450

seq1  GGTAAAAGTAACTTTTCAAAAGATCAGGCTTAAATATGTTTATACCTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAAGTAACTTTTCAAAAGATCAGGCTTAAATATGTTTATACCTGCA  500

seq1  CGAAATCAAATGCAACACTAATTTTGCAAGACATAATAAGGTGAGCATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAATCAAATGCAACACTAATTTTGCAAGACATAATAAGGTGAGCATTG  550

seq1  AAAGTAATCATTTTAGGCTCTGTGCACCTGACACGCTGAGCCAAATATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAATCATTTTAGGCTCTGTGCACCTGACACGCTGAGCCAAATATGT  600

seq1  GACATGAGAAAAAATGCAGAAGACCTGATGGAGCTTGTTTTATTTTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGAGAAAAAATGCAGAAGACCTGATGGAGCTTGTTTTATTTTTTTT  650

seq1  ATTGGAAATTATTAATGAAAAACCTGCAGAATGGAGGTTGACACTTCTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAAATTATTAATGAAAAACCTGCAGAATGGAGGTTGACACTTCTGC  700

seq1  CCAGGAGTCATAGACAATTAGGAGCTCTGAGATGTAGGAGGTTTGTACGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGTCATAGACAATTAGGAGCTCTGAGATGTAGGAGGTTTGTACGC  750

seq1  TCTCAAACTTTCCTCTTCCACTTCTAGAAATTTTAGCTTTGCATTCTGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAACTTTCCTCTTCCACTTCTAGAAATTTTAGCTTTGCATTCTGAA  800

seq1  GACCACCATCAGGTAATAATTCGGTAAGTATTTAAGTTAAGCCCGGGTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACCATCAGGTAATAATTCGGTAAGTATTTAAGTTAAGCCCGGGTAA  850

seq1  AGCATAGGTTATCATCCTATGGATATTTGTAAACATCCCCAGACTTCAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAGGTTATCATCCTATGGATATTTGTAAACATCCCCAGACTTCAGA  900

seq1  GTAGTGATAGATTCTGTCTGAGGCTCAAGTACAAACCAATGTAATTTTAA  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GTAGTGATAGATTCTGTCTGAGGCTCAAGTACAAACCAATGTAA-TTTAA  949

seq1  CTCCCTCACAATGCTTACCCCTCTGAACTAATATTAAACCTTGGATTTTT  1000
      ||||||||| ||||||||||||||||||| ||||||||||||||| ||||
seq2  CTCCCTCAC-ATGCTTACCCCTCTGAACT-ATATTAAACCTTGGA-TTTT  996

seq1  CTGATGCTAAAATCGTGATATTTCCATCAAGCTGCAAGTCCTGTACTTGA  1050
      |||||||||||||||||||||||||||| |||||||||||||||||||| 
seq2  CTGATGCTAAAATCGTGATATTTCCATC-AGCTGCAAGTCCTGTACTTG-  1044

seq1  AGAGGAAAAGATCCTC--TTTTGTCATTACTCTGTTCAT-ACAAGAAAAA  1097
      ||| ||||||||||||  ||||||||||||||||||||| |||  |||||
seq2  AGA-GAAAAGATCCTCTTTTTTGTCATTACTCTGTTCATAACAGAAAAAA  1093

seq1  CATTGTAAAATCATCGTATTT-CAATTAATTTTAAAGCTA  1136
      |||||   ||||||||||||| ||||| | ||||||||||
seq2  CATTG-GTAATCATCGTATTTCCAATTTA-TTTAAAGCTA  1131


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