BAC Information

Click to search

BAC

Clone NameB6Ng01-202N21
Chromosome5 (Build37)
Map Location 126,967,326 - 127,082,547
singlet/doubletdoublet
Overlap genenone
Upstream geneAacs, Tmem132b, EG231736, LOC100039178, LOC665760
Downstream geneLOC100040327, Tmem132c, Slc15a4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-202N21.bB6Ng01-202N21.g
ACCGA023243GA023244
length1,1091,115
definitionB6Ng01-202N21.b B6Ng01-202N21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,081,428 - 127,082,547)(126,967,326 - 126,968,428)
sequence
gaattctttgaatgatctcatctaaatcttggctacatgagtaactttcc
gatacttgcattttttcccctattgtgcagatatcccttccccccacccc
ccaccccgtggcagatttagttttctgcaaacaaacccaccctttgagga
acaattgcctctctttttcttttattgagtctctggctcattgactcttt
tatttttatctattactctggtgggtttctttctttctttcttttttttt
tttaatgtttctctggcttagttaaaccaatgagcctttccaaaataaat
tcttggcagagattctcattatccatattagacagacattaaaagaagaa
acgaggatctggagagatggctcctgcactcagggcatttgctgcatttg
cacagcttgggttcccatcacccacttggcagctcacagtcatctctaag
ttcagtctcagggaatccggtgccatcttctgaacttcatgggcactgca
cacacatgggacacatacacacattcggaaaagtaagcttacccataaaa
taattaaatagttttttagaaaagaaatatgcctttaaaaaacaaaaaac
aaacaaggaacctggattctccatagaccatgaggaatggccatgattta
ggtatggagttgtccagaaataggttcctaggagtacagaaggtaatata
acagctcactgaaattgtagatgctttatggctgacagctctcaatccaa
cacaactccacagctaacacaagtcccctttggcatcacccagagactca
gctctattgtatatatgtatatttttagtataaaatatcaatcttgcaga
gaaactgaacacacaggtccaaggggtagggtatggctgtgggggtgaca
ggcatggcaaattcataaattacagtgctatttttactttgaggatggtt
ttagggactgtggttaatatacttaaccatgaatttcataaagtgaattt
cagaaaaaataagtgtggctccatacgaaaggatagccactccaagccac
agatccctcagttttctagtattgtcatatggatctaacattcttacaga
gtacaggta
gaattcttgaaacccctataaaacccatgcaggctcttgaaagaatgggg
ctttttttcctctcttagtgccatggatctgtccagatcatctctatact
cctaagatttgccaagcaaggagagaataaagtccttcgagacagacctg
tctatgtgagatcttttcatacagagtgccagtttgagatgaaaccaaaa
atggtcacttcttaaggggaatgacagtgatcagagttttcacagtgtca
aaacacagataaaggctggagagtcagtccagcatttaaaagtttcagaa
gatctgagtttggttcccagaagggacatgagatagctgacaactgcctg
tagctccaggggatctgaagccctcttctgatcggtaaaggcacttacat
cgatgtaggaccctctttctcgctctccctttctcactctttccctccct
ctctccttccctacctcttcaacccccctacacacacagatacacacaca
tgcagaaagagtcacacacacatttttttgaaaggtggctgaagagacag
ctcagcagttaacagtgtttactactctttcagaggatccacacccagca
actcaagaccatctgaaattctcctgacttccaagggtgacttcacacat
gtgacacacattcatacagacccaacgttaagacaatacaaagaaatggg
gaaaaaatagaaatgcccgcagactgtctttgcagagattgttctggttt
ggtgtatcatatcctctccatgtgagggcagcgagccattgggcttcatc
agtctccttgatctgggctttctgagtttcactctctgcatctccatcca
tcttcccatttttgcacatctatcccaagatctcagcattccctccctcc
ctttctcctgcatagtggtcccttttgattgacatctcatgggtgttgac
aacaatgaccctttatcttacctttacatcctcattctcttgctgcatct
taaaacccccattcaacacttcctcctctatttatgtgattttctatctg
tttcaatctttgatcctactagacccttaacacaatggaaggctaaataa
tggtcgtggtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_127081428_127082547
seq2: B6Ng01-202N21.b_48_1156 (reverse)

seq1  TACCTGTAACCCTCTGTAAGGATG-TAGATCAATATGACAAATAACTAGA  49
      ||||||||   ||||||||| ||| |||||| |||||||||   ||||||
seq2  TACCTGTA---CTCTGTAAGAATGTTAGATCCATATGACAA--TACTAGA  45

seq1  AAACTGAGGGAATCCTGT-GCCTGGAGT-GCTATCCTTTCCTTATGGAAG  97
      |||||||||||   |||| || |||||| |||||||||| | ||||| ||
seq2  AAACTGAGGGA--TCTGTGGCTTGGAGTGGCTATCCTTT-CGTATGG-AG  91

seq1  CCACACTTTATTTTTTCCTGAAATTTCACTTTTATGAAATTTCATGGTTA  147
      |||||| ||||||||| |||||| ||||| ||||||||| ||||||||||
seq2  CCACAC-TTATTTTTT-CTGAAA-TTCAC-TTTATGAAA-TTCATGGTTA  136

seq1  AGTATATTAACCACAGTCCCTAAAACCATCCTTCAAAGT-AAAATAGCAC  196
      ||||||||||||||||||||||||||||||| ||||||| ||||||||||
seq2  AGTATATTAACCACAGTCCCTAAAACCATCC-TCAAAGTAAAAATAGCAC  185

seq1  TGTAATTTATGAATTTGCCATGCCTGTCACCCCCACAGCCATACCCTACC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATTTATGAATTTGCCATGCCTGTCACCCCCACAGCCATACCCTACC  235

seq1  CCTTGGACCTGTGTGTTCAGTTTCTCTGCAAGATTGATATTTTATACTAA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGACCTGTGTGTTCAGTTTCTCTGCAAGATTGATATTTTATACTAA  285

seq1  AAATATACATATATACAATAGAGCTGAGTCTCTGGGTGATGCCAAAGGGG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATACATATATACAATAGAGCTGAGTCTCTGGGTGATGCCAAAGGGG  335

seq1  ACTTGTGTTAGCTGTGGAGTTGTGTTGGATTGAGAGCTGTCAGCCATAAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTGTTAGCTGTGGAGTTGTGTTGGATTGAGAGCTGTCAGCCATAAA  385

seq1  GCATCTACAATTTCAGTGAGCTGTTATATTACCTTCTGTACTCCTAGGAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTACAATTTCAGTGAGCTGTTATATTACCTTCTGTACTCCTAGGAA  435

seq1  CCTATTTCTGGACAACTCCATACCTAAATCATGGCCATTCCTCATGGTCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTTCTGGACAACTCCATACCTAAATCATGGCCATTCCTCATGGTCT  485

seq1  ATGGAGAATCCAGGTTCCTTGTTTGTTTTTTGTTTTTTAAAGGCATATTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGAATCCAGGTTCCTTGTTTGTTTTTTGTTTTTTAAAGGCATATTT  535

seq1  CTTTTCTAAAAAACTATTTAATTATTTTATGGGTAAGCTTACTTTTCCGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTAAAAAACTATTTAATTATTTTATGGGTAAGCTTACTTTTCCGA  585

seq1  ATGTGTGTATGTGTCCCATGTGTGTGCAGTGCCCATGAAGTTCAGAAGAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTATGTGTCCCATGTGTGTGCAGTGCCCATGAAGTTCAGAAGAT  635

seq1  GGCACCGGATTCCCTGAGACTGAACTTAGAGATGACTGTGAGCTGCCAAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCGGATTCCCTGAGACTGAACTTAGAGATGACTGTGAGCTGCCAAG  685

seq1  TGGGTGATGGGAACCCAAGCTGTGCAAATGCAGCAAATGCCCTGAGTGCA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGATGGGAACCCAAGCTGTGCAAATGCAGCAAATGCCCTGAGTGCA  735

seq1  GGAGCCATCTCTCCAGATCCTCGTTTCTTCTTTTAATGTCTGTCTAATAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCATCTCTCCAGATCCTCGTTTCTTCTTTTAATGTCTGTCTAATAT  785

seq1  GGATAATGAGAATCTCTGCCAAGAATTTATTTTGGAAAGGCTCATTGGTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAATGAGAATCTCTGCCAAGAATTTATTTTGGAAAGGCTCATTGGTT  835

seq1  TAACTAAGCCAGAGAAACATTAAAAAAAAAAAAGAAAGAAAGAAAGAAAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAAGCCAGAGAAACATTAAAAAAAAAAAAGAAAGAAAGAAAGAAAC  885

seq1  CCACCAGAGTAATAGATAAAAATAAAAGAGTCAATGAGCCAGAGACTCAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAGAGTAATAGATAAAAATAAAAGAGTCAATGAGCCAGAGACTCAA  935

seq1  TAAAAGAAAAAGAGAGGCAATTGTTCCTCAAAGGGTGGGTTTGTTTGCAG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGAAAAAGAGAGGCAATTGTTCCTCAAAGGGTGGGTTTGTTTGCAG  985

seq1  AAAACTAAATCTGCCACGGGGTGGGGGGTGGGGGGAAGGGATATCTGCAC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTAAATCTGCCACGGGGTGGGGGGTGGGGGGAAGGGATATCTGCAC  1035

seq1  AATAGGGGAAAAAATGCAAGTATCGGAAAGTTACTCATGTAGCCAAGATT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGGGAAAAAATGCAAGTATCGGAAAGTTACTCATGTAGCCAAGATT  1085

seq1  TAGATGAGATCATTCAAAGAATTC  1120
      ||||||||||||||||||||||||
seq2  TAGATGAGATCATTCAAAGAATTC  1109

seq1: chr5_126967326_126968428
seq2: B6Ng01-202N21.g_65_1179

seq1  GAATTCTTGAAACCCCTATAAAACCCATGCAGGCTCTTGAAAGAATGGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGAAACCCCTATAAAACCCATGCAGGCTCTTGAAAGAATGGGG  50

seq1  CTTTTTTTCCTCTCTTAGTGCCATGGATCTGTCCAGATCATCTCTATACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTCCTCTCTTAGTGCCATGGATCTGTCCAGATCATCTCTATACT  100

seq1  CCTAAGATTTGCCAAGCAAGGAGAGAATAAAGTCCTTCGAGACAGACCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGATTTGCCAAGCAAGGAGAGAATAAAGTCCTTCGAGACAGACCTG  150

seq1  TCTATGTGAGATCTTTTCATACAGAGTGCCAGTTTGAGATGAAACCAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGTGAGATCTTTTCATACAGAGTGCCAGTTTGAGATGAAACCAAAA  200

seq1  ATGGTCACTTCTTAAGGGGAATGACAGTGATCAGAGTTTTCACAGTGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCACTTCTTAAGGGGAATGACAGTGATCAGAGTTTTCACAGTGTCA  250

seq1  AAACACAGATAAAGGCTGGAGAGTCAGTCCAGCATTTAAAAGTTTCAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAGATAAAGGCTGGAGAGTCAGTCCAGCATTTAAAAGTTTCAGAA  300

seq1  GATCTGAGTTTGGTTCCCAGAAGGGACATGAGATAGCTGACAACTGCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGAGTTTGGTTCCCAGAAGGGACATGAGATAGCTGACAACTGCCTG  350

seq1  TAGCTCCAGGGGATCTGAAGCCCTCTTCTGATCGGTAAAGGCACTTACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCCAGGGGATCTGAAGCCCTCTTCTGATCGGTAAAGGCACTTACAT  400

seq1  CGATGTAGGACCCTCTTTCTCGCTCTCCCTTTCTCACTCTTTCCCTCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGTAGGACCCTCTTTCTCGCTCTCCCTTTCTCACTCTTTCCCTCCCT  450

seq1  CTCTCCTTCCCTACCTCTTCAACCCCCCTACACACACAGATACACACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTTCCCTACCTCTTCAACCCCCCTACACACACAGATACACACACA  500

seq1  TGCAGAAAGAGTCACACACACATTTTTTTGAAAGGTGGCTGAAGAGACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAAAGAGTCACACACACATTTTTTTGAAAGGTGGCTGAAGAGACAG  550

seq1  CTCAGCAGTTAACAGTGTTTACTACTCTTTCAGAGGATCCACACCCAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCAGTTAACAGTGTTTACTACTCTTTCAGAGGATCCACACCCAGCA  600

seq1  ACTCAAGACCATCTGAAATTCTCCTGACTTCCAAGGGTGACTTCACACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAGACCATCTGAAATTCTCCTGACTTCCAAGGGTGACTTCACACAT  650

seq1  GTGACACACATTCATACAGACCCAACGTTAAGACAATACAAAGAAATGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACACACATTCATACAGACCCAACGTTAAGACAATACAAAGAAATGGG  700

seq1  GAAAAAATAGAAATGCCCGCAGACTGTCTTTGCAGAGATTGTTCTGGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAATAGAAATGCCCGCAGACTGTCTTTGCAGAGATTGTTCTGGTTT  750

seq1  GGTGTATCATATCCTCTCCATGTGAGGGCAGCGAGCCATT-GGCTTCATC  799
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GGTGTATCATATCCTCTCCATGTGAGGGCAGCGAGCCATTGGGCTTCATC  800

seq1  AGTCTCCTTGATCTGGGCTTTCTGAGTTTCACTCTCTGCATCTCCATCCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCCTTGATCTGGGCTTTCTGAGTTTCACTCTCTGCATCTCCATCCA  850

seq1  TCTTCCCATTTTTGCACATCTATCCCAAGATCTCAGCATTCCCT-CCTCC  898
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TCTTCCCATTTTTGCACATCTATCCCAAGATCTCAGCATTCCCTCCCTCC  900

seq1  CTTTCTCCTGCATAGTGGT-CCTTTTGATTGACATCTCATGGGTGTTGAC  947
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTTTCTCCTGCATAGTGGTCCCTTTTGATTGACATCTCATGGGTGTTGAC  950

seq1  AACAATGA-CCTTTATC-TACCTTTACATCCTCATTCTCTTGCTGCATCT  995
      |||||||| |||||||| ||||||||||||||||||||||||||||||||
seq2  AACAATGACCCTTTATCTTACCTTTACATCCTCATTCTCTTGCTGCATCT  1000

seq1  TAAAACCCCCATTC-ACACTTCCTCTCCTATTTATTGTGATTTTCTATCT  1044
      |||||||||||||| ||||||||||  ||||||| |||||||||||||||
seq2  TAAAACCCCCATTCAACACTTCCTCCTCTATTTA-TGTGATTTTCTATCT  1049

seq1  TGTTCAATCTTGAATCCTACTAGA-CCTTAACACAATGG-AGGTTAAATA  1092
        |||||||||  ||||||||||| |||||||||||||| ||| ||||||
seq2  GTTTCAATCTTTGATCCTACTAGACCCTTAACACAATGGAAGGCTAAATA  1099

seq1  ATG-----TGTGTGTG  1103
      |||      |||||||
seq2  ATGGTCGTGGTGTGTG  1115