BAC Information

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BAC

Clone NameB6Ng01-203C19
Chromosome5 (Build37)
Map Location 17,427,976 - 17,589,996
singlet/doubletdoublet
Overlap geneGnat3
Upstream geneLOC626390, LOC668142, LOC100041749, LOC100041832, Speer4f, EG630927, Sema3c, Cd36
Downstream geneGnai1, LOC100041818, LOC668167
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-203C19.bB6Ng01-203C19.g
ACCGA023463GA023464
length1,0521,148
definitionB6Ng01-203C19.b B6Ng01-203C19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,588,964 - 17,589,996)(17,427,976 - 17,429,026)
sequence
gaattcagctgaaacaaagaaacagaacccagacaaaacaaaggatgggt
ctttgggttttcaccctatatatacatgtaggcagagctgaaaattaaac
tttgaaccttgaccagagaacctttgtcttggcttcattctgctctcacc
tgcccatcctacttcattcccagcctccctttcagttatacccagttctc
catggcagctggatggctacaggtggctcctgaatgatgggctggaacac
aggggtggaggtgggggatcaactgaggaatgctgattttggtggggctc
tactgaaaaccgaagaggtaatggtatcctgcagggtggtaagagatgca
ttcaatgggatacagggctaggttgaagagttattgacccaacattgagt
tcacctaggggtatgacagtgagttggaatgggggaattctatgtaggca
tttgtctgcagtcaagagctgcatcaggtgaggggagcaggttttaaaat
aaaataaaataaaatgaaataaagtaaaataatataaaataaaataaaaa
taccagaaagcaacaacaacaaagagatgttagctaaattcttttttttt
tctttttttttttttttttttttttttgtacactgagagtttattggcag
tattgttgggagggacttgcctgagaaaatgaaagtaggtcctgacaagc
tgaaatagattctgcaagtccttagtgctagagccaacagcccttctctt
gcagaatgtggaagatgagatggccccttcaaagttctgctcagttgagg
caagaagttcttctttgaacaaaaggcatatctgaggttggtatttattc
tgtgacttgtttaaccagcccattgtgggcagtcagagcatgaatttcta
cagctgtgaatgggagattggtggacttcagcatccacagcagacagggc
agcttcatcctcccagaaacagaaagcacctggttcttcgcaatggtgaa
aggacatatggattatcttcttgtgttcttggtacagtgagccggcggta
gg

gaattcttcactaaaacctcttgaccctgggctttttttttggttgggag
gtgtggggagccgccctcacattcgccgttgcaagatggcgctgacatcc
tgtgttctaagtggtaaacaaataatctgcgcatgtgccaagggtagttt
tccactacatgtgctctgccttccccgtgacgacaactgggctgatgggc
tgcagccaatcagggagtgacacgtcctaggcagaggataatccttaaaa
gggacggggtttcgccattctctctcttgcttttgctcttgctctcttgc
tctggctcttgcattcttgctcctgaagatgtaagcaataaagctcttgc
ttttgctcttgcactcttgctcctgaagatgtaagcaataaagttttgcc
gcagaagattctggtttgctgcgtctttcctggccggtcgcgagaacgcg
tgtaagagggaggattttaatgactgcttctatttccttatggattatga
aactgtttaaacactttacctgaccttgatttaactttggtacatggtat
ctgactagaaaatcattcattttctctatagggagaagctatctggtttc
ataagaaaatatctaaatgcttatttgtatgtgcatgtgtgtatgtatat
atgtgtatgtgttttgtgtctgtgtacatgcacacgttttcttattttgt
tctgtcttgcccttctttttgaactacagtggcttcttacccttagctag
agatgaacaatagattaaggatgaaggtagagaagagaagcagaaggtga
gaagcctaaaattggaaatggaaccttgaaagaggattggcatccagtga
acatggagttagtttgtatagaacataatttccaacatatgctctttcct
gtaaacagggctcataggaatgaacacatatgaacaagatgtagcttccc
tcatatgtgtattgtgtgtacatagaactgtcgaggaaaaaaaataataa
aatacccgggagaacacagaaatggttattttactgacttgggccatact
ttgtggacttgggcatactttggtgaagattaaacaaagttctttatact
tcatatgcttttaatttaactactagggtttaagactctttttgcctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_17588964_17589996
seq2: B6Ng01-203C19.b_44_1095 (reverse)

seq1  CCTA-CGCC-GCTCACTGTACAGAG-ACACA--GAGAT-ATCCATATGT-  43
      |||| |||| |||||||||||  || |||||   |||| |||||||||| 
seq2  CCTACCGCCGGCTCACTGTACCAAGAACACAAGAAGATAATCCATATGTC  50

seq1  CTTTCACCATTGCGAAG-ACCA-GTGCTTCTTGTTTCTGGGA-GATGAAG  90
      ||||||||||||||||| |||| ||||||  ||||||||||| |||||||
seq2  CTTTCACCATTGCGAAGAACCAGGTGCTTTCTGTTTCTGGGAGGATGAAG  100

seq1  CTGCCCTGTCTGCTGTGGATGCTGAAGTCCACCAATCTCCCATTCACAGC  140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTGTCTGCTGTGGATGCTGAAGTCCACCAATCTCCCATTCACAGC  150

seq1  TGTAG-AATTCATGCTCTGACTG-CCACAAT-GGCTGGT--AACAAGTCA  185
      ||||| ||||||||||||||||| ||||||| |||||||  |||||||||
seq2  TGTAGAAATTCATGCTCTGACTGCCCACAATGGGCTGGTTAAACAAGTCA  200

seq1  CAG-ATAAATACCAACCTCAGATATGCC-TTTGTTCAAAG-AGAACTTCT  232
      ||| |||||||||||||||||||||||| ||||||||||| |||||||||
seq2  CAGAATAAATACCAACCTCAGATATGCCTTTTGTTCAAAGAAGAACTTCT  250

seq1  TGCCTCAACTGAGCAGAACTTTGAA-GGGCCATCTCATCTTCCACATTCT  281
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TGCCTCAACTGAGCAGAACTTTGAAGGGGCCATCTCATCTTCCACATTCT  300

seq1  GCAAGAGAAGGGCTGTTGGCTCTAGCACTAAGGACTTGCAGAATCTATTT  331
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAGAAGGGCTGTTGGCTCTAGCACTAAGGACTTGCAGAATCTATTT  350

seq1  CAGCTTGTCAAGACCTACTTTCATTTTCTCAGGCAAGTCCCTCCCAACAA  381
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTGTCAGGACCTACTTTCATTTTCTCAGGCAAGTCCCTCCCAACAA  400

seq1  TACTGCCAATAAACTCTCAGTGTACAAAAAAAAAAAAAAAAAAAAAAAAA  431
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCCAATAAACTCTCAGTGTACAAAAAAAAAAAAAAAAAAAAAAAAA  450

seq1  GAAAAAAAAAAGAATTTAGCTAACATCTCTTTGTTGTTGTTGCTTTCTGG  481
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAAAAGAATTTAGCTAACATCTCTTTGTTGTTGTTGCTTTCTGG  500

seq1  TATTTTTATTTTATTTTATATTATTTTACTTTATTTCATTTTATTTTATT  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTATTTTATTTTATATTATTTTACTTTATTTCATTTTATTTTATT  550

seq1  TTATTTTAAAACCTGCTCCCCTCACCTGATGCAGCTCTTGACTGCAGACA  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTAAAACCTGCTCCCCTCACCTGATGCAGCTCTTGACTGCAGACA  600

seq1  AATGCCTACATAGAATTCCCCCATTCCAACTCACTGTCATACCCCTAGGT  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCTACATAGAATTCCCCCATTCCAACTCACTGTCATACCCCTAGGT  650

seq1  GAACTCAATGTTGGGTCAATAACTCTTCAACCTAGCCCTGTATCCCATTG  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCAATGTTGGGTCAATAACTCTTCAACCTAGCCCTGTATCCCATTG  700

seq1  AATGCATCTCTTACCACCCTGCAGGATACCATTACCTCTTCGGTTTTCAG  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCATCTCTTACCACCCTGCAGGATACCATTACCTCTTCGGTTTTCAG  750

seq1  TAGAGCCCCACCAAAATCAGCATTCCTCAGTTGATCCCCCACCTCCACCC  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCCCCACCAAAATCAGCATTCCTCAGTTGATCCCCCACCTCCACCC  800

seq1  CTGTGTTCCAGCCCATCATTCAGGAGCCACCTGTAGCCATCCAGCTGCCA  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTCCAGCCCATCATTCAGGAGCCACCTGTAGCCATCCAGCTGCCA  850

seq1  TGGAGAACTGGGTATAACTGAAAGGGAGGCTGGGAATGAAGTAGGATGGG  881
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAACTGGGTATAACTGAAAGGGAGGCTGGGAATGAAGTAGGATGGG  900

seq1  CAGGTGAGAGCAGAATGAAGCCAAGACAAAGGTTCTCTGGTCAAGGTTCA  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGAGAGCAGAATGAAGCCAAGACAAAGGTTCTCTGGTCAAGGTTCA  950

seq1  AAGTTTAATTTTCAGCTCTGCCTACATGTATATATAGGGTGAAAACCCAA  981
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTAATTTTCAGCTCTGCCTACATGTATATATAGGGTGAAAACCCAA  1000

seq1  AGACCCATCCTTTGTTTTGTCTGGGTTCTGTTTCTTTGTTTCAGCTGAAT  1031
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCATCCTTTGTTTTGTCTGGGTTCTGTTTCTTTGTTTCAGCTGAAT  1050

seq1  TC  1033
      ||
seq2  TC  1052


seq1: chr5_17427976_17429026
seq2: B6Ng01-203C19.g_138_1211

seq1  GCCGTTGCAAGATGGCGCTGACATCCTGTGTTCTAAGTGGTAAACAAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTTGCAAGATGGCGCTGACATCCTGTGTTCTAAGTGGTAAACAAATA  50

seq1  ATCTGCGCATGTGCCAAGGGTAGTTTTCCACTACATGTGCTCTGCCTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCGCATGTGCCAAGGGTAGTTTTCCACTACATGTGCTCTGCCTTCC  100

seq1  CCGTGACGACAACTGGGCTGATGGGCTGCAGCCAATCAGGGAGTGACACG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGACGACAACTGGGCTGATGGGCTGCAGCCAATCAGGGAGTGACACG  150

seq1  TCCTAGGCAGAGGATAATCCTTAAAAGGGACGGGGTTTCGCCATTCTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGGCAGAGGATAATCCTTAAAAGGGACGGGGTTTCGCCATTCTCTC  200

seq1  TCTTGCTTTTGCTCTTGCTCTCTTGCTCTGGCTCTTGCATTCTTGCTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTTTTGCTCTTGCTCTCTTGCTCTGGCTCTTGCATTCTTGCTCCT  250

seq1  GAAGATGTAAGCAATAAAGCTCTTGCTTTTGCTCTTGCACTCTTGCTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGTAAGCAATAAAGCTCTTGCTTTTGCTCTTGCACTCTTGCTCCT  300

seq1  GAAGATGTAAGCAATAAAGTTTTGCCGCAGAAGATTCTGGTTTGCTGCGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGTAAGCAATAAAGTTTTGCCGCAGAAGATTCTGGTTTGCTGCGT  350

seq1  CTTTCCTGGCCGGTCGCGAGAACGCGTGTAAGAGGGAGGATTTTAATGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTGGCCGGTCGCGAGAACGCGTGTAAGAGGGAGGATTTTAATGAC  400

seq1  TGCTTCTATTTCCTTATGGATTATGAAACTGTTTAAACACTTTACCTGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTATTTCCTTATGGATTATGAAACTGTTTAAACACTTTACCTGAC  450

seq1  CTTGATTTAACTTTGGTACATGGTATCTGACTAGAAAATCATTCATTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATTTAACTTTGGTACATGGTATCTGACTAGAAAATCATTCATTTTC  500

seq1  TCTATAGGGAGAAGCTATCTGGTTTCATAAGAAAATATCTAAATGCTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAGGGAGAAGCTATCTGGTTTCATAAGAAAATATCTAAATGCTTAT  550

seq1  TTGTATGTGCATGTGTGTATGTATATATGTGTATGTG-TTTGTGTCTGTG  599
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTGTATGTGCATGTGTGTATGTATATATGTGTATGTGTTTTGTGTCTGTG  600

seq1  TACATGCACACG-TTTCTTATTTTGTTCTGTCTTGCCCTTCTTTTTGAAC  648
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TACATGCACACGTTTTCTTATTTTGTTCTGTCTTGCCCTTCTTTTTGAAC  650

seq1  TACAGTGGCTTCTTACCCTTAGCTAGAGATGAACAATAGATT-AGGATGA  697
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TACAGTGGCTTCTTACCCTTAGCTAGAGATGAACAATAGATTAAGGATGA  700

seq1  AGGTAGAGAAGAGAAGCAGAAGGTGAGAAGCCTAAAA-TGGAAATGGAAC  746
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGGTAGAGAAGAGAAGCAGAAGGTGAGAAGCCTAAAATTGGAAATGGAAC  750

seq1  C-TGAAAGAGGAATGGCATCCAGTGAACATGGAGTTAG-TTGTATAGAAC  794
      | |||||||||| ||||||||||||||||||||||||| |||||||||||
seq2  CTTGAAAGAGGATTGGCATCCAGTGAACATGGAGTTAGTTTGTATAGAAC  800

seq1  ATAA-TTCCAACATATGCTC-TTCCTGTAAACAGGGCTCATAGGAATGAA  842
      |||| ||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATAATTTCCAACATATGCTCTTTCCTGTAAACAGGGCTCATAGGAATGAA  850

seq1  CACATATG-ACAAGATGTAGGCCTCCCTCATATGTGTATTGTGTGTACAT  891
      |||||||| |||||||||| || |||||||||||||||||||||||||||
seq2  CACATATGAACAAGATGTA-GCTTCCCTCATATGTGTATTGTGTGTACAT  899

seq1  AGAAACAGT-GAGGAAAAAAA--AAAAAAAAACACAGGAG-ACACCAGAA  937
      || ||| || |||||||||||  || |||| || | |||| ||||   ||
seq2  AG-AACTGTCGAGGAAAAAAAATAATAAAATACCCGGGAGAACACAGAAA  948

seq1  TGG-TATTTTACTGACTTGGG-CATACTTTGT-GACTTGGGCATACTTT-  983
      ||| ||||||||||||||||| |||||||||| |||||||||||||||| 
seq2  TGGTTATTTTACTGACTTGGGCCATACTTTGTGGACTTGGGCATACTTTG  998

seq1  GTG-AGACTAAAC-AAGTTCTTTAAACTCAATA-GC-TTTAATT--AC-A  1026
      ||| ||| ||||| |||||||||| |||  ||| || |||||||  || |
seq2  GTGAAGATTAAACAAAGTTCTTTATACTTCATATGCTTTTAATTTAACTA  1048

seq1  TCAGTGTTTAAGACTC-ATTTGCCTT  1051
        || |||||||||||  ||||||||
seq2  CTAGGGTTTAAGACTCTTTTTGCCTT  1074


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