BAC Information

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BAC

Clone NameB6Ng01-203D03
Chromosome5 (Build37)
Map Location 56,180,568 - 56,181,738
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666405
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-203D03.bB6Ng01-203D03.g
ACCGA023478GA023479
length1,1611,233
definitionB6Ng01-203D03.b B6Ng01-203D03.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatagtggttaaataatttatgcaaggtcaaagaccagcaagtag
aatgccaggactggagagattttgcttgccgaggaaacatgtctttttac
caccggggcttgtactgttctccgcctagcactcagcaaagtgccgatta
tctgcttcacttgctgctaatcttgggaatatttttggtttgaatgctta
tccctgaagcgctttctgacctatgtgtcctcttgcttgcttatttgttt
gtttatttatttatttatttatttatttattgcttatttatttatttatt
tctctcttctcttttgcctggaatgctctctcacattgcactgaagaaag
gcatgctatatttgcctcctacttggaaaaagagatactggtagattttt
cttcaaaggggaaagtaaataattacgcaaaaataaaataaaaataaaat
gtaaaataaaaggggattgtaatctgtcaatctgtatgccatgccattac
agtagcttgattatcataataccagcttattactgtcaaacaacttacag
ataattacttatcaatgctgtgttcttgcgttcctgaggcagtttgatat
agtgaaaacagacataggaagaacacagagaacgttgaagaattacagct
cttaaagagtcaaaaaatgaaacaagtaagattcgctgaaatgcacaacc
acgaggagggagaacctgtagagagcatatccagaggttaagcaagccct
ccagtttcgggatgtggccacccactcatctccaaatgtttaacccagaa
ctgcttctgtctaaaggaaatacagggacaaagtgtagagccgagactga
aagaaaggccatccagagactgttccacctggggatccatcccatataca
gacgccaaactcagacactattgcagatggcaagaaagtgcttgctgaca
ggagcctgatgtagttgtctcctcagaggctctgccagagcttgacaaat
acagggtgatgctctcagcaccattggactgagcatggggttcccaatgg
aggagttatagaaagaactaaaggagctgcacactaagggagagcacata
tcacctcgcgacttcgcagaactaaccaaaagtaccataagagagaccat
gggctccagca

gaattcaagaaataagacatcaaccacccaaataacactattaaaaatgg
agtacagatctaaccagattattctcaaaaaagggatctctaatggctga
gaagcacttaaagaaatgtttaatgtctttagtcaccagggaaatgcaaa
taaaagcctcttaaattccaacttaaacacctcagaatggctaagatcta
aaactcaagggaggacacatattggcaaggatgtagaacaaggagaatat
tcctccattgctgctgggagtgcaaacttgcacaaccactttgaaaatca
aaatagcaatttctcaggaaagtgaaataattctgcctctatagccagat
acaaatctcttggcatatatctaaaagaggccctaccaagccacctgtgt
tcatagcagctttatttgtaataaccagaagctgaaaacaacccagatac
accttaaccacagaggaacactcctccactgttggtgggattgcaaggtt
gtacaaccactctggaaatcagtctggcggttcctcagaaaattggacat
agtactactggaggatcccgcaataccacttctgggcatatatccagaag
atgttccaaccagtaagaaggacacatgctccactatgttcatagcagcc
ttatttataatagccagaagctggaaagaacccagatgctcctcaacaga
ggaatggatacagaaaatgtggtacatttacacaatggagtactactcag
ctattaaaaagaatgaatttatgaaattcctaggcacatggatggacctg
gagagcatcatcctgagtgaggtaacccaatcacaaaagaactcacatga
tatgtactcactgataagtggatatttagcccagaaacttagaatagcca
agatataagatacaatttgcaaaacacatgaaactcaagaagaacgaaga
ccaaagtgtggacacttagccccttcttagattgggaacaaaacacccat
ggaaggaattacagagacaaggtttggagctggagaactcaaggacggac
atctagaggactgccacatccagggatcattccatatcacttcaaacgca
gacccattgccatacttctagcagatttgctgaaagggacctggaaatta
gctgttctctggtgggactatggcaggccttagccaaatacaggaaggtg
ggaaagtgcctccaccatactcgagctgctcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_56180568_56181738
seq2: B6Ng01-203D03.b_43_1203

seq1  GAATTCATAGTGGTTAAATAATTTATGCAAGGTCAAAGACCAGCAAGTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGTGGTTAAATAATTTATGCAAGGTCAAAGACCAGCAAGTAG  50

seq1  AATGCCAGGACTGGAGAGATTTTGCTTGCCGAGGAAACATGTCTTTTTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCAGGACTGGAGAGATTTTGCTTGCCGAGGAAACATGTCTTTTTAC  100

seq1  CACCGGGGCTTGTACTGTTCTCCGCCTAGCACTCAGCAAAGTGCCGATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGGGGCTTGTACTGTTCTCCGCCTAGCACTCAGCAAAGTGCCGATTA  150

seq1  TCTGCTTCACTTGCTGCTAATCTTGGGAATATTTTTGGTTTGAATGCTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTCACTTGCTGCTAATCTTGGGAATATTTTTGGTTTGAATGCTTA  200

seq1  TCCCTGAAGCGCTTTCTGACCTATGTGTCCTCTTGCTTGCTTATTTGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGAAGCGCTTTCTGACCTATGTGTCCTCTTGCTTGCTTATTTGTTT  250

seq1  GTTTATTTATTTATTTATTTATTTATTTATTGCTTATTTATTTATTTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTTATTTATTTATTTATTTATTTATTGCTTATTTATTTATTTATT  300

seq1  TCTCTCTTCTCTTTTGCCTGGAATGCTCTCTCACATTGCACTGAAGAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTTCTCTTTTGCCTGGAATGCTCTCTCACATTGCACTGAAGAAAG  350

seq1  GCATGCTATATTTGCCTCCTACTTGGAAAAAGAGATACTGGTAGATTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCTATATTTGCCTCCTACTTGGAAAAAGAGATACTGGTAGATTTTT  400

seq1  CTTCAAAGGGGAAAGTAAATAATTACGCAAAAATAAAATAAAAATAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAAGGGGAAAGTAAATAATTACGCAAAAATAAAATAAAAATAAAAT  450

seq1  GTAAAATAAAAGGGGATTGTAATCTGTCAATCTGTATGCCATGCCATTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAATAAAAGGGGATTGTAATCTGTCAATCTGTATGCCATGCCATTAC  500

seq1  AGTAGCTTGATTATCATAATACCAGCTTATTACTGTCAAACAACTTACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCTTGATTATCATAATACCAGCTTATTACTGTCAAACAACTTACAG  550

seq1  ATAATTACTTATCAATGCTGTGTTCTTGCGTTCCTGAGGCAGTTTGATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTACTTATCAATGCTGTGTTCTTGCGTTCCTGAGGCAGTTTGATAT  600

seq1  AGTGAAAACAGACATAGGAAGAACACAGAGAACGTTGAAGAATTACAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAAACAGACATAGGAAGAACACAGAGAACGTTGAAGAATTACAGCT  650

seq1  CTTAAAGAGTCAAAAAATGAAACAAGTAAGATTCGCTGAAATGCACAACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAGAGTCAAAAAATGAAACAAGTAAGATTCGCTGAAATGCACAACC  700

seq1  ACGAGGAGGGAGAACCTGTAGAGAGCATATCCAGAGGTTAAGCAAGCCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGGAGGGAGAACCTGTAGAGAGCATATCCAGAGGTTAAGCAAGCCCT  750

seq1  CCAGTTTCGGGATGTGGCCACCCACTCATCTCCAAATGTTTAACCCAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTTCGGGATGTGGCCACCCACTCATCTCCAAATGTTTAACCCAGAA  800

seq1  CTGCTTCTGTCT-AAGGAAATACAGGGACAAAGTGTAGAGCCGAGACTGA  849
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCTGTCTAAAGGAAATACAGGGACAAAGTGTAGAGCCGAGACTGA  850

seq1  AAGAAAGGCCATCCAGAGACTGTTCCACCTGGGGATCCATCCCATATACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGGCCATCCAGAGACTGTTCCACCTGGGGATCCATCCCATATACA  900

seq1  GACGCCAAACTCAGACACTATTGCAGATGGCAAGAAAGTGCTTGCTGACA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGCCAAACTCAGACACTATTGCAGATGGCAAGAAAGTGCTTGCTGACA  950

seq1  GGAGCCTGATGTAGTTGTCTCCTCAGAGGCTCTGCCAGAGCTTGACAAAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCTGATGTAGTTGTCTCCTCAGAGGCTCTGCCAGAGCTTGACAAAT  1000

seq1  ACAGGGTGGATGCTCTCAGCCAACCATTGGACTGAGCATGGGGTTCCCAA  1049
      ||||||| ||||||||||||  ||||||||||||||||||||||||||||
seq2  ACAGGGT-GATGCTCTCAGC--ACCATTGGACTGAGCATGGGGTTCCCAA  1047

seq1  TGGAGGAGTTATAGAAAGAACTAAAGGAGCTGCAACACCATAGGGAGAGC  1099
      ||||||||||||||||||||||||||||||||| |||| | |||||||||
seq2  TGGAGGAGTTATAGAAAGAACTAAAGGAGCTGC-ACACTA-AGGGAGAGC  1095

seq1  AACAATATCAACCTCGCGAACTCGCAGGGACTAAACCAAAAAGTACACAT  1149
      |   ||||| |||||||||  ||||| | |||||  | |||||||| |||
seq2  A--CATATC-ACCTCGCGACTTCGCA-GAACTAA--CCAAAAGTAC-CAT  1138

seq1  -AGAGAGACCCATGGCTCCAGCA  1171
       |||||||||   ||||||||||
seq2  AAGAGAGACCATGGGCTCCAGCA  1161


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