BAC Information

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BAC

Clone NameB6Ng01-204A20
Chromosome5 (Build37)
Map Location 61,871,491 - 62,013,769
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041498, LOC666597, EG666610
Downstream geneLOC100041524, G6pd2, LOC100041543, Centd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-204A20.bB6Ng01-204A20.g
ACCGA024102GA024103
length1,1781,172
definitionB6Ng01-204A20.b B6Ng01-204A20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,871,491 - 61,872,656)(62,012,612 - 62,013,769)
sequence
gaattcattgagagttttgaaataacaagaattacaatttaaaaatacgt
gtcaatgtccaccatgtcatttatgacttaaagactgcatctctgaaact
gtgatagaaaggatgttcattttttatagggagagatgtgttataattgt
tgctacaaataaagcaatcaagaaatacttaatgctgaaataaaataaat
cttcttctctgtgaatattgctatgtctttttgtgaatttgtttttaatc
atatcccaacatttaattaaatattttgcctacagagtgaatgacataat
tgttccccttaaagccagaatctttcatggtagtcttttaaattgcctat
ttcttgagtcataacttacagctacagaaagctctaagctctaagtggga
caaagtaatttaatattctaatctaccatattttccacaatgttactgag
agtttgttcagttctcttcagtttgtgcagtttgtgaactacaggtcatc
agaggcagttgtagccatagaataagaaaggaggatcccgaagattaaaa
cacatagccagagttaatttgaggccaaacaagttaattcagtagaaggc
tgagagatcccagattgaatcagtcaccttgtagaggagtttgagccaga
acagatgagttgaaccagccagccagagttcagaaaaaaaaaaagctgga
aaaggtgagcttatttagcagtaagcccttgagaggacaattgcatcaag
tgtataaaagttacatttacaattactactttcttactccgtatgttatg
ctagctaatttgttttaatatcaagcattgatggttcacatttcttataa
tatagtctatatatagtgctttctcttctagtcttatgggaaaactaatg
ttctttgtgcaacctactaggatatattttaccaccgttcaaggaataat
gtatcacattttgctgcatgtttgtttctgttgatatgggaaaatgagaa
aatttgattttctagtatttagttaatgcatttacatccagttgactttg
acagtgttaactgaaggaagacatgaattgtactgacaatgagtaaaact
caggtacaagaaagccagtccttgtaaaccagcacatgtgatttgaaatt
tttgtaccctgattcactaaggggagat

gaattcagcatcaatttgagtgaagaatcaatgcaaattataagggtttc
taagaataaagggcataaaaaacaaaaccgaccctaaatcaagactactt
ctcaaagtcaagataacaggtttgtgccacacattattgaaatatttaaa
tgacaacagttgaataattgagatgtctctaaatgtctttaagtgaaata
aaattgcataactaacatgtagaaaactatgtctgtcattgtatgtcttt
attctctggcaacaatttatatacgttcatttatataattgtagtgttcc
aatatccataaatatgaagtgattatactactgaatatattgaccctttt
tgaaatttcatatttaatgctccagttgtagctgtaggaatatcagaaat
gtcaacttctggaatggttgcacacttgtgttttaagacagtcatggttt
attactgaaataccttgaactaaaaaagtaccaactaccaagtatataat
acctgtttctatttcatataaattcttgtgatagattaaaaattacttag
agtcaagtagcatgtaatactatagaatttacagttgacaagtaaataaa
cgtaaaatacagttattccaaagcagagaacatttcccaggtttattctg
aagaattaaaaaaaaaagttgatttgaggccatattttgtctttattttt
cactgcttcataaactgaaaaaattaaaagcacttattttgaactgtaca
gtataaaacaatgttttaagggtctacaaatgaatgcaaaaggttatccc
acagtgaaaataattggatgcccagaggttagtaattttttttcaacttc
cttatcctatgtttacttatctcacttcttttctgtttatctttaaaatc
ctttttaaaaaggaaaaaaaatatccaccattgatgaattttggggaaca
aaatgaaggttaagagggagagctgttgcaacctgagcagaagctttcaa
ttgtaactttatatgaactgtgaatttttggtaatactctttggaatttt
aatcatttggtgaaattaccttaatgtttcatgacaggaaaaaatgtgaa
attgaaatactatacctattaaggtatatgtctggtggtggttacaagaa
tatatctcagtcaattttacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_61871491_61872656
seq2: B6Ng01-204A20.b_45_1222

seq1  GAATTCATTGAGAGTTTTGAAATAACAAGAATTACAATTTAAAAATACGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGAGAGTTTTGAAATAACAAGAATTACAATTTAAAAATACGT  50

seq1  GTCAATGTCCACCATGTCATTTATGACTTAAAGACTGCATCTCTGAAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATGTCCACCATGTCATTTATGACTTAAAGACTGCATCTCTGAAACT  100

seq1  GTGATAGAAAGGATGTTCATTTTTTATAGGGAGAGATGTGTTATAATTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATAGAAAGGATGTTCATTTTTTATAGGGAGAGATGTGTTATAATTGT  150

seq1  TGCTACAAATAAAGCAATCAAGAAATACTTAATGCTGAAATAAAATAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACAAATAAAGCAATCAAGAAATACTTAATGCTGAAATAAAATAAAT  200

seq1  CTTCTTCTCTGTGAATATTGCTATGTCTTTTTGTGAATTTGTTTTTAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCTCTGTGAATATTGCTATGTCTTTTTGTGAATTTGTTTTTAATC  250

seq1  ATATCCCAACATTTAATTAAATATTTTGCCTACAGAGTGAATGACATAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCCAACATTTAATTAAATATTTTGCCTACAGAGTGAATGACATAAT  300

seq1  TGTTCCCCTTAAAGCCAGAATCTTTCATGGTAGTCTTTTAAATTGCCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCCCTTAAAGCCAGAATCTTTCATGGTAGTCTTTTAAATTGCCTAT  350

seq1  TTCTTGAGTCATAACTTACAGCTACAGAAAGCTCTAAGCTCTAAGTGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGAGTCATAACTTACAGCTACAGAAAGCTCTAAGCTCTAAGTGGGA  400

seq1  CAAAGTAATTTAATATTCTAATCTACCATATTTTCCACAATGTTACTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTAATTTAATATTCTAATCTACCATATTTTCCACAATGTTACTGAG  450

seq1  AGTTTGTTCAGTTCTCTTCAGTTTGTGCAGTTTGTGAACTACAGGTCATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGTTCAGTTCTCTTCAGTTTGTGCAGTTTGTGAACTACAGGTCATC  500

seq1  AGAGGCAGTTGTAGCCATAGAATAAGAAAGGAGGATCCCGAAGATTAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAGTTGTAGCCATAGAATAAGAAAGGAGGATCCCGAAGATTAAAA  550

seq1  CACATAGCCAGAGTTAATTTGAGGCCAAACAAGTTAATTCAGTAGAAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAGCCAGAGTTAATTTGAGGCCAAACAAGTTAATTCAGTAGAAGGC  600

seq1  TGAGAGATCCCAGATTGAATCAGTCACCTTGTAGAGGAGTTTGAGCCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGATCCCAGATTGAATCAGTCACCTTGTAGAGGAGTTTGAGCCAGA  650

seq1  ACAGATGAGTTGAACCAGCCAGCCAGAGTTCAGAAAAAAAAAAAGCTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATGAGTTGAACCAGCCAGCCAGAGTTCAGAAAAAAAAAAAGCTGGA  700

seq1  AAAGGTGAGCTTATTTAGCAGTAAGCCCTTGAGAGGACAATTGCATCAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTGAGCTTATTTAGCAGTAAGCCCTTGAGAGGACAATTGCATCAAG  750

seq1  TGTATAAAAGTTACATTTACAATTACTACTTTCTTACTCCGTATGTTATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAAAAGTTACATTTACAATTACTACTTTCTTACTCCGTATGTTATG  800

seq1  CTAGCTAATTTGTTTTAATATCAAGCATTGATGGTTCACATTTCTTATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTAATTTGTTTTAATATCAAGCATTGATGGTTCACATTTCTTATAA  850

seq1  TATAGTCTATATATAGTGCTTTCTCTTCTAGTCTTAT-GGAAAACTAATG  899
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TATAGTCTATATATAGTGCTTTCTCTTCTAGTCTTATGGGAAAACTAATG  900

seq1  TTCTTTGTGCAACCTACTAGGATATATTTTACCA-CGTTCAAGGAATAAT  948
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTCTTTGTGCAACCTACTAGGATATATTTTACCACCGTTCAAGGAATAAT  950

seq1  GTATCACATTTTGCTGCATGTTTG-TTCTGTTGATAT-GGAAAATGAGAA  996
      |||||||||||||||||||||||| |||||||||||| ||||||||||||
seq2  GTATCACATTTTGCTGCATGTTTGTTTCTGTTGATATGGGAAAATGAGAA  1000

seq1  AATTTTGATTTTCTAGTATTTAG-TAATGCATTTAACATCCAGTTGATTT  1045
      || |||||||||||||||||||| |||||||||| |||||||||||| ||
seq2  AA-TTTGATTTTCTAGTATTTAGTTAATGCATTT-ACATCCAGTTGACTT  1048

seq1  TGACAAGTGTTAAATGAAGGAAGACATTGAATGTACTGACAAAGAG-AAA  1094
      |||| |||||||| |||||||||||||  | ||||||||||| ||| |||
seq2  TGAC-AGTGTTAACTGAAGGAAGACATGAATTGTACTGACAATGAGTAAA  1097

seq1  AATCAGG-ACAAGAAAG-CAGTCTTGG--AACCAGCACATG---TTTGAA  1137
      | ||||| ||||||||| ||||| | |  ||||||||||||   ||||||
seq2  ACTCAGGTACAAGAAAGCCAGTCCTTGTAAACCAGCACATGTGATTTGAA  1147

seq1  TATTTTGTA--CTGATCAACTAAGGGGAGAT  1166
        |||||||  |||||  |||||||||||||
seq2  ATTTTTGTACCCTGATTCACTAAGGGGAGAT  1178


seq1: chr5_62012612_62013769
seq2: B6Ng01-204A20.g_65_1236 (reverse)

seq1  TGGTAAAATTGACTAGAATATA-TCTTGTTAC--ACACAGTACATAATAC  47
      ||||||||||||||   ||||| |||||| ||   |||   |||||   |
seq2  TGGTAAAATTGACTGAGATATATTCTTGTAACCACCACCAGACATATACC  50

seq1  ATAATAGGGTTATATTA-TTCAATTTCACATTTTTTCCTGTCATGAAACA  96
       |||||||  |||| || ||||||||||||||||||||||||||||||||
seq2  TTAATAGG--TATAGTATTTCAATTTCACATTTTTTCCTGTCATGAAACA  98

seq1  TT-ATGTAATTCCACAAAATGATTAAAATTTCAAAGAGTATTA-CAAAAA  144
      || | |||||| ||| |||||||||||||| |||||||||||| ||||||
seq2  TTAAGGTAATTTCACCAAATGATTAAAATTCCAAAGAGTATTACCAAAAA  148

seq1  TTCACAGTTCATATTAAG-TACAA-TGAAGGCTTCTGCTCAGTTTGC-AC  191
      |||||||||||||| ||| ||||| |||| |||||||||||| |||| ||
seq2  TTCACAGTTCATATAAAGTTACAATTGAAAGCTTCTGCTCAGGTTGCAAC  198

seq1  AGCTCTCCCTCTTAACC-TCATTTTGTTCCC--AAAATCATC-ATGGT-G  236
      ||||||||||||||||| |||||||||||||  ||| ||||| ||||| |
seq2  AGCTCTCCCTCTTAACCTTCATTTTGTTCCCCAAAATTCATCAATGGTGG  248

seq1  ATATTTTTTTTCCTTTTTAAAAAGGATTTTAAAGATAAACAGAAAAGAAG  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTTTTTCCTTTTTAAAAAGGATTTTAAAGATAAACAGAAAAGAAG  298

seq1  TGAGATAAGTAAACATAGGATAAGGAAGT--GAAAAAAATTACTAACCTC  334
      |||||||||||||||||||||||||||||   ||||||||||||||||||
seq2  TGAGATAAGTAAACATAGGATAAGGAAGTTGAAAAAAAATTACTAACCTC  348

seq1  TGGGCATCCAATTATTTTCACTGTGGGATAACCTTTTGCATTCATTTGTA  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCATCCAATTATTTTCACTGTGGGATAACCTTTTGCATTCATTTGTA  398

seq1  GACCCTTAAAACATTGTTTTATACTGTACAGTTCAAAATAAGTGCTTTTA  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTTAAAACATTGTTTTATACTGTACAGTTCAAAATAAGTGCTTTTA  448

seq1  ATTTTTTCAGTTTATGAAGCAGTGAAAAATAAAGACAAAATATGGCCTCA  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTCAGTTTATGAAGCAGTGAAAAATAAAGACAAAATATGGCCTCA  498

seq1  AATCAACTTTTTTTTTTAATTCTTCAGAATAAACCTGGGAAATGTTCTCT  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAACTTTTTTTTTTAATTCTTCAGAATAAACCTGGGAAATGTTCTCT  548

seq1  GCTTTGGAATAACTGTATTTTACGTTTATTTACTTGTCAACTGTAAATTC  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGGAATAACTGTATTTTACGTTTATTTACTTGTCAACTGTAAATTC  598

seq1  TATAGTATTACATGCTACTTGACTCTAAGTAATTTTTAATCTATCACAAG  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTATTACATGCTACTTGACTCTAAGTAATTTTTAATCTATCACAAG  648

seq1  AATTTATATGAAATAGAAACAGGTATTATATACTTGGTAGTTGGTACTTT  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATATGAAATAGAAACAGGTATTATATACTTGGTAGTTGGTACTTT  698

seq1  TTTAGTTCAAGGTATTTCAGTAATAAACCATGACTGTCTTAAAACACAAG  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTCAAGGTATTTCAGTAATAAACCATGACTGTCTTAAAACACAAG  748

seq1  TGTGCAACCATTCCAGAAGTTGACATTTCTGATATTCCTACAGCTACAAC  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAACCATTCCAGAAGTTGACATTTCTGATATTCCTACAGCTACAAC  798

seq1  TGGAGCATTAAATATGAAATTTCAAAAAGGGTCAATATATTCAGTAGTAT  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCATTAAATATGAAATTTCAAAAAGGGTCAATATATTCAGTAGTAT  848

seq1  AATCACTTCATATTTATGGATATTGGAACACTACAATTATATAAATGAAC  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACTTCATATTTATGGATATTGGAACACTACAATTATATAAATGAAC  898

seq1  GTATATAAATTGTTGCCAGAGAATAAAGACATACAATGACAGACATAGTT  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATAAATTGTTGCCAGAGAATAAAGACATACAATGACAGACATAGTT  948

seq1  TTCTACATGTTAGTTATGCAATTTTATTTCACTTAAAGACATTTAGAGAC  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACATGTTAGTTATGCAATTTTATTTCACTTAAAGACATTTAGAGAC  998

seq1  ATCTCAATTATTCAACTGTTGTCATTTAAATATTTCAATAATGTGTGGCA  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAATTATTCAACTGTTGTCATTTAAATATTTCAATAATGTGTGGCA  1048

seq1  CAAACCTGTTATCTTGACTTTGAGAAGTAGTCTTGATTTAGGGTCGGTTT  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCTGTTATCTTGACTTTGAGAAGTAGTCTTGATTTAGGGTCGGTTT  1098

seq1  TGTTTTTTATGCCCTTTATTCTTAGAAACCCTTATAATTTGCATTGATTC  1134
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTTATGCCCTTTATTCTTAGAAACCCTTATAATTTGCATTGATTC  1148

seq1  TTCACTCAAATTGATGCTGAATTC  1158
      ||||||||||||||||||||||||
seq2  TTCACTCAAATTGATGCTGAATTC  1172


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