BAC Information

Click to search

BAC

Clone NameB6Ng01-204K08
Chromosome5 (Build37)
Map Location 63,877,330 - 64,005,094
singlet/doubletdoublet
Overlap genenone
Upstream geneCentd1
Downstream gene3110047P20Rik, LOC100042133, 0610040J01Rik, AA536743, LOC100041636, LOC100041646, Pgm1, Tbc1d1, Ppia-ps22, LOC433894, LOC100042198
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-204K08.bB6Ng01-204K08.g
ACCGA024534GA024535
length1,1251,089
definitionB6Ng01-204K08.b B6Ng01-204K08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,877,330 - 63,878,445)(64,004,046 - 64,005,094)
sequence
gaattcagtttctgcaatgacatgtgtataagaaaaaattaaatggaaat
gtaacattctaaaatttgataacaaatacttataagagtgagtcacctga
actacttatttaaattttaatgtaaataatagttaaaatacaaatgactg
tgctctgaaaacccgtagtctcttccttggtgatcagacctttccttatc
caaactaaatgtatcaatagccacaggttaggctataatacaaaggcaat
agggtgtcatctctgtgccgtttaaatatctaaaatcttttgaaatttat
agctgagatactggcttgaaagaaaagatgttttgggactcaaagaaatg
tcctaaaaatttcaagacaaattttatgccacacacaaagaagaaaatct
catttgggaaaatagatgaaggtcaagatatccttgttccctgagaaaca
acttccttcataaactagcagagcaccagaagttgtcacgagacaagaaa
ggggactgttttcagtgtttcctgttaatagccctgcatcttaccactgg
actgagatccacaaataattcaggaatttgtcaaaagaatgtaaagagaa
tgtctgtgactcagtcctatgttgtatgtaccaaaagtattggatgtctc
acaagcctccctcagctttagtaaattgtaagccaaggttaggagtctgc
ctacaagtgaatgaaggcctttttatgtctagtgagaaacagccaagaaa
attggctgtaggatgggattctgcagatacatcgaaagcagccctgtcgg
attcagagaagtacagacaggagtgaaatttttctttagggggccaagag
tcatgtgctaaatgcatgtgctgaagatgaaaacatgttggcatgacagg
accactggaataatcaataggtgatgaggaacaatgattagagaatgtca
gagacaccagcataggaggacaggacaggctgacaagtgttccctacttt
ccaaaccattatcctcatttccataccctaggttctttaagattcaggag
aaataattgagtttccataagcctcaataaatttgaatgcctggatctcc
aaattggtagaaactgcttgaaaaa
gaattctcattactttactcatgtctcaatgtctttttttttaaagattt
atttattgctatatgtaagtacactgtcgctgtcgctgtcttcagacaca
ccagaagagggcatcagattccattatagatggttgtgagccaccatgta
gttgctgggatttgaactcaggaccttcggaagagcagtcagtgctctta
ccctctgagccatctcgccagccccatgtcttgatgtcttaacaatgctt
ttgaaagttaggatggggaagcatttggtttgttttactctttgctccaa
caaaagcatctgagacagatattgctaatgaaccccagtggtcttaccta
ctgagtctaggctaagcctctcattttttccccttaacaacccagttcca
caggcaaccagaaccaaaccgctgaagccatgcagcagaacattttggcg
ttactaagcctcaagacagttgggcattaggacaaagtgtacttgacagt
tttcaatggttttgaacataggtaatgataaacagattttagaaggcaaa
tttaaccctctttaaaaaaacacgtgatgaaatttggcccgtgaaaggca
gcaattgtactaatatttgctaggtgcattttaccttagcctttagaact
aagttaagcaattattgtaggatgacaaattatactccctcccagtctcc
cgatgttttttaacttcttgtcaagatgctcagatttatttttgctttta
taattcatattgatctgtttacataatgcagctaattttcaactgtcctt
caattttattttttatgattttcactgttttttaatttattcatgtttgt
ttgtttgttatttattttaaaactccagattattaattaccatctcttgt
ccacccctctgacttgtttcaacatcccataccttccaccaaaggatggt
cccccaaccccccccagccctccttacccccacccagtcttctaaaagtc
cagtcctcttggaaggatttaggtgccattcttctctgattaaaacccag
actccacagttcctctaattgtatatggtgtttgggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_63877330_63878445
seq2: B6Ng01-204K08.b_45_1169

seq1  GAATTCAGTTTCTGCAATGACATGTGTATAAGAAAAAATTAAATGGAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTTCTGCAATGACATGTGTATAAGAAAAAATTAAATGGAAAT  50

seq1  GTAACATTCTAAAATTTGATAACAAATACTTATAAGAGTGAGTCACCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACATTCTAAAATTTGATAACAAATACTTATAAGAGTGAGTCACCTGA  100

seq1  ACTACTTATTTAAATTTTAATGTAAATAATAGTTAAAATACAAATGACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTTATTTAAATTTTAATGTAAATAATAGTTAAAATACAAATGACTG  150

seq1  TGCTCTGAAAACCCGTAGTCTCTTCCTTGGTGATCAGACCTTTCCTTATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGAAAACCCGTAGTCTCTTCCTTGGTGATCAGACCTTTCCTTATC  200

seq1  CAAACTAAATGTATCAATAGCCACAGGTTAGGCTATAATACAAAGGCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTAAATGTATCAATAGCCACAGGTTAGGCTATAATACAAAGGCAAT  250

seq1  AGGGTGTCATCTCTGTGCCGTTTAAATATCTAAAATCTTTTGAAATTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGTCATCTCTGTGCCGTTTAAATATCTAAAATCTTTTGAAATTTAT  300

seq1  AGCTGAGATACTGGCTTGAAAGAAAAGATGTTTTGGGACTCAAAGAAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAGATACTGGCTTGAAAGAAAAGATGTTTTGGGACTCAAAGAAATG  350

seq1  TCCTAAAAATTTCAAGACAAATTTTATGCCACACACAAAGAAGAAAATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAAAATTTCAAGACAAATTTTATGCCACACACAAAGAAGAAAATCT  400

seq1  CATTTGGGAAAATAGATGAAGGTCAAGATATCCTTGTTCCCTGAGAAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGGGAAAATAGATGAAGGTCAAGATATCCTTGTTCCCTGAGAAACA  450

seq1  ACTTCCTTCATAAACTAGCAGAGCACCAGAAGTTGTCACGAGACAAGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTTCATAAACTAGCAGAGCACCAGAAGTTGTCACGAGACAAGAAA  500

seq1  GGGGACTGTTTTCAGTGTTTCCTGTTAATAGCCCTGCATCTTACCACTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACTGTTTTCAGTGTTTCCTGTTAATAGCCCTGCATCTTACCACTGG  550

seq1  ACTGAGATCCACAAATAATTCAGGAATTTGTCAAAAGAATGTAAAGAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGATCCACAAATAATTCAGGAATTTGTCAAAAGAATGTAAAGAGAA  600

seq1  TGTCTGTGACTCAGTCCTATGTTGTATGTACCAAAAGTATTGGATGTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTGACTCAGTCCTATGTTGTATGTACCAAAAGTATTGGATGTCTC  650

seq1  ACAAGCCTCCCTCAGCTTTAGTAAATTGTAAGCCAAGGTTAGGAGTCTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCCTCCCTCAGCTTTAGTAAATTGTAAGCCAAGGTTAGGAGTCTGC  700

seq1  CTACAAGTGAATGAAGGCCTTTTTATGTCTAGTGAGAAACAGCCAAGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAGTGAATGAAGGCCTTTTTATGTCTAGTGAGAAACAGCCAAGAAA  750

seq1  ATTGGCTGTAGGATGGGATTCTGCAGATACATCGAAAGCAGCCCTGTCGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCTGTAGGATGGGATTCTGCAGATACATCGAAAGCAGCCCTGTCGG  800

seq1  ATTCAGAGAAGTACAGACAGGAGTGAAATTTTTCTTTAGGGGGCCAAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGAGAAGTACAGACAGGAGTGAAATTTTTCTTTAGGGGGCCAAGAG  850

seq1  TCATGTGCTAAATGCATGTGCTGAAGATGAAAACATGTTGGCATGACAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGCTAAATGCATGTGCTGAAGATGAAAACATGTTGGCATGACAGG  900

seq1  ACCACTGGAATAATCAATAGGTGATGAGGAACAATGATTAGAGAATGTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ACCACTGGAATAATCAATAGGTGATGAGGAACAATGATTAGAGAATGTC-  949

seq1  AGAGACACCAGCATAGGAGGACAGGACAGGCTGACAAGGTGTTCCCTACT  1000
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGAGACACCAGCATAGGAGGACAGGACAGGCTGACAA-GTGTTCCCTACT  998

seq1  TTCCAAACCA-TATCCTCATTTCCATACCTTA-GTTC-TTAAGATTCA-G  1046
      |||||||||| |||||||||||||||||| || |||| |||||||||| |
seq2  TTCCAAACCATTATCCTCATTTCCATACCCTAGGTTCTTTAAGATTCAGG  1048

seq1  AGAAAT-ATTGAG-TTCCATAAG-CTC-ATATATTTGAATG-CTTGATCT  1091
      |||||| |||||| ||||||||| ||| ||| ||||||||| || |||||
seq2  AGAAATAATTGAGTTTCCATAAGCCTCAATAAATTTGAATGCCTGGATCT  1098

seq1  CC-AATTGGTAG-AACTGTTTGAAAAA  1116
      || ||||||||| ||||| ||||||||
seq2  CCAAATTGGTAGAAACTGCTTGAAAAA  1125

seq1: chr5_64004046_64005094
seq2: B6Ng01-204K08.g_67_1155 (reverse)

seq1  CCTCC--AACA-CATATACAA-TAGAGG-ACTGTTGAGTCTGGG-TTTAA  44
      |||||  |||| ||||||||| |||||| ||||| ||||||||| |||||
seq2  CCTCCCAAACACCATATACAATTAGAGGAACTGTGGAGTCTGGGTTTTAA  50

seq1  TCAGAGAAGA--TGCACCT-AATCCT--CAAGA-GACTGGAC-TTTAG-A  86
      ||||||||||   |||||| ||||||  ||||| |||||||| ||||| |
seq2  TCAGAGAAGAATGGCACCTAAATCCTTCCAAGAGGACTGGACTTTTAGAA  100

seq1  GACTGG--TGGGGTA---GGGGCTGGGGGG---TGGGG--ACATCCTT--  124
      ||||||   ||||||    |||||||||||   |||||   |||||||  
seq2  GACTGGGTGGGGGTAAGGAGGGCTGGGGGGGGTTGGGGGACCATCCTTTG  150

seq1  GTGG-AGGTATGGGATG-TGAAAC-AGTCAGA-GGGTGGAC-AGAGATGG  169
      |||| |||||||||||| |||||| ||||||| |||||||| ||||||||
seq2  GTGGAAGGTATGGGATGTTGAAACAAGTCAGAGGGGTGGACAAGAGATGG  200

seq1  TAA-TAAT-ATCTGGAGTTTT-AAATAAATAAACAAACAAACAAACATGA  216
      ||| |||| |||||||||||| |||||||| |||||||||||||||||||
seq2  TAATTAATAATCTGGAGTTTTAAAATAAAT-AACAAACAAACAAACATGA  249

seq1  ATAAAT--AAAAACAGTGAAAATCATAAAAA--TAAATTGAAGGACAGTT  262
      ||||||  |||||||||||||||||||||||   ||||||||||||||||
seq2  ATAAATTAAAAAACAGTGAAAATCATAAAAAATAAAATTGAAGGACAGTT  299

seq1  GAAAATTAGCTGCATTATGT-AACAGATCAATATGAATTATAAAAGC-AA  310
      |||||||||||||||||||| |||||||||||||||||||||||||| ||
seq2  GAAAATTAGCTGCATTATGTAAACAGATCAATATGAATTATAAAAGCAAA  349

seq1  AATAAATCTGAGCATCTTGACAAGAAGTT-AAAAACATCGGGAGACTGGG  359
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AATAAATCTGAGCATCTTGACAAGAAGTTAAAAAACATCGGGAGACTGGG  399

seq1  AGGGAGTATAATTTGTCATCCTACAATAATTGCTTAACTTAGTTCTAAAG  409
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGTATAATTTGTCATCCTACAATAATTGCTTAACTTAGTTCTAAAG  449

seq1  GCTAAGGTAAAATGCACCTAGCAAATATTAGTACAATTGCTGCCTTTCAC  459
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGGTAAAATGCACCTAGCAAATATTAGTACAATTGCTGCCTTTCAC  499

seq1  GGGCCAAATTTCATCACGTGTTTTTTTAAAGAGGGTTAAATTTGCCTTCT  509
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAAATTTCATCACGTGTTTTTTTAAAGAGGGTTAAATTTGCCTTCT  549

seq1  AAAATCTGTTTATCATTACCTATGTTCAAAACCATTGAAAACTGTCAAGT  559
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTGTTTATCATTACCTATGTTCAAAACCATTGAAAACTGTCAAGT  599

seq1  ACACTTTGTCCTAATGCCCAACTGTCTTGAGGCTTAGTAACGCCAAAATG  609
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTTGTCCTAATGCCCAACTGTCTTGAGGCTTAGTAACGCCAAAATG  649

seq1  TTCTGCTGCATGGCTTCAGCGGTTTGGTTCTGGTTGCCTGTGGAACTGGG  659
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTGCATGGCTTCAGCGGTTTGGTTCTGGTTGCCTGTGGAACTGGG  699

seq1  TTGTTAAGGGGAAAAAATGAGAGGCTTAGCCTAGACTCAGTAGGTAAGAC  709
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAAGGGGAAAAAATGAGAGGCTTAGCCTAGACTCAGTAGGTAAGAC  749

seq1  CACTGGGGTTCATTAGCAATATCTGTCTCAGATGCTTTTGTTGGAGCAAA  759
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGGGTTCATTAGCAATATCTGTCTCAGATGCTTTTGTTGGAGCAAA  799

seq1  GAGTAAAACAAACCAAATGCTTCCCCATCCTAACTTTCAAAAGCATTGTT  809
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAAACAAACCAAATGCTTCCCCATCCTAACTTTCAAAAGCATTGTT  849

seq1  AAGACATCAAGACATGGGGCTGGCGAGATGGCTCAGAGGGTAAGAGCACT  859
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATCAAGACATGGGGCTGGCGAGATGGCTCAGAGGGTAAGAGCACT  899

seq1  GACTGCTCTTCCGAAGGTCCTGAGTTCAAATCCCAGCAACTACATGGTGG  909
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCTCTTCCGAAGGTCCTGAGTTCAAATCCCAGCAACTACATGGTGG  949

seq1  CTCACAACCATCTATAATGGAATCTGATGCCCTCTTCTGGTGTGTCTGAA  959
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAACCATCTATAATGGAATCTGATGCCCTCTTCTGGTGTGTCTGAA  999

seq1  GACAGCGACAGCGACAGTGTACTTACATATAGCAATAAATAAATCTTTAA  1009
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCGACAGCGACAGTGTACTTACATATAGCAATAAATAAATCTTTAA  1049

seq1  AAAAAAAGACATTGAGACATGAGTAAAGTAATGAGAATTC  1049
      ||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGACATTGAGACATGAGTAAAGTAATGAGAATTC  1089