BAC Information

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BAC

Clone NameB6Ng01-204N08
Chromosome5 (Build37)
Map Location 88,137,044 - 88,317,026
singlet/doubletdoublet
Overlap geneCsn1s2a, Csn1s2b, 4930432K09Rik, EG654494, Odam
Upstream geneTmprss11e, A730098D12Rik, LOC622056, Ugt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37, LOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494, LOC100039818, Ugt2b38, Ugt2a2, Ugt2a1, Sult1b1, Sult1d1, Sult1e1, Csn1s1, Csn2
Downstream geneBC037156, Csn3, BC051076, 2310003L06Rik, 4931407G18Rik, Smr1, EG665603, Smr2, LOC100039941, LOC630942, EG665615, Muc10, Amtn, LOC100039963, EG665631, Ambn, Enam, Igj, Crlz1, Rufy3, Grsf1, Mobkl1a, Dck, Mkrn1-ps1, Slc4a4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-204N08.bB6Ng01-204N08.g
ACCGA024668GA024669
length1,005949
definitionB6Ng01-204N08.b B6Ng01-204N08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,137,044 - 88,138,041)(88,316,087 - 88,317,026)
sequence
gaattccaaccaatgtcttctctaaatatacctttggaggttgcagcttt
cagtgccaatgacacagcacacttgccagatgtcattttttggtgcttcc
ttcattaattaatgccacacttttaccaaaggttttacagttttggattt
agataagtaaatatcagacatattctgttccacaaatccttagaacatcc
tacttctatacttcctgatcatgtcatatctatgacagttggacactatt
gtatcaggagcatgctaatcctccatcatatgccatcttgcacatccagg
aatgaccacataaagtaatgagtgaaataatgctttcattatattcttcc
tacctgaatgagaaaaactttaaatttaatttgtaatcattttcaaatat
tttaactggaatgcatttcctgaagaaggtcatgatttatagcagattta
ttctcaacctgtgggtcattattctcttggaggttaaacaatctttcaca
gggttcacctaagaccatcaggaaacacagatatttacattatgattaat
atcagtagtaatattaactaggaagtaccaatgaaataatttcatggtcg
gggtcaccacaacatgaggtactgtattaaagggtagcagcattaggagg
ttagaacgcactggtatagagcacttggaatattgctttacaggcacaga
tctgttaacatcatggttccctttacttaagttaggtgatgaaagaatta
gggaagaattaatagatagcaaaagatgaaaggaaaaaattccatgtatc
aatacaagataaatagactaaagtttatttttaaaaatcaaactgtttgg
tggcatacagagggccaccacaggtttaaagctcatggtctcttcatgag
atgtctgtgtgttcaaatgtgtgtgtatgtgtgtgtgttttcaatatatt
tgttcctgtgctttttctttggctcttttttctgtaatggtttgtttggc
ttttc
gaattctcttcacttacctgtgtttgatcttgaggtactttgacaggtac
cacataggacatctgaggaaaagaatagtcacaaagtcatataagcaaat
tactcttgacttgttatttgcaattcttggtttgatttccctagatctag
cttcccatgaatcatttcattagcaatgctccattaaagtttctcttcta
catgagctataattcatacaaattctgctcccacatggtgttttagttcc
tggttattgactatattctagggcaattggttttaatgttatttttatgt
taaaaatcagactatataaggagatactttcaggggtggttgcaatagta
gaggagaaaacttcataaaaatcctgtcatattttcaagctaattcacaa
taaccttcataccctatctgacagcagcaagatggaagaagcttcactta
cagggctagcactctgctgggtctgaggtggtgtctgctgctgagagagg
tctggctggccagcctggcctccttgggcaagtccaacctgtcttgataa
aggtatctgatttgggaatagtccagcaaagctctctagtgttgagagag
taaactgtgggcgtcctgagacctgagcctgctgctgctgcagaaaccca
gggaagggaggaatccaggagttgaaggcaccctgtgaaaagcaaagata
gaaggcaatggtttactcttttatgagaaagaaagggagaaaggaaggaa
gaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaggaaggaagg
aaggatggaaggaatggaaggaagactaggatagattgattgtaattatc
gtaatgtcagaatctattcattgtaagcacagaaactacacgaaagaatg
taaggaagaaatttgaaattcaacccccagtaagaaaggccaaaaagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_88137044_88138041
seq2: B6Ng01-204N08.b_43_1039

seq1  GAATTCCAACCAATGTCTTCTCTAAATATACCTTTGGAGGTTGCAGCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACCAATGTCTTCTCTAAATATACCTTTGGAGGTTGCAGCTTT  50

seq1  CAGTGCCAATGACACAGCACACTTGCCAGATGTCATTTTTTGGTGCTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCCAATGACACAGCACACTTGCCAGATGTCATTTTTTGGTGCTTCC  100

seq1  TTCATTAATTAATGCCACACTTTTACCAAAGGTTTTACAGTTTTGGATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTAATTAATGCCACACTTTTACCAAAGGTTTTACAGTTTTGGATTT  150

seq1  AGATAAGTAAATATCAGACATATTCTGTTCCACAAATCCTTAGAACATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAGTAAATATCAGACATATTCTGTTCCACAAATCCTTAGAACATCC  200

seq1  TACTTCTATACTTCCTGATCATGTCATATCTATGACAGTTGGACACTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCTATACTTCCTGATCATGTCATATCTATGACAGTTGGACACTATT  250

seq1  GTATCAGGAGCATGCTAATCCTCCATCATATGCCATCTTGCACATCCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAGGAGCATGCTAATCCTCCATCATATGCCATCTTGCACATCCAGG  300

seq1  AATGACCACATAAAGTAATGAGTGAAATAATGCTTTCATTATATTCTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACCACATAAAGTAATGAGTGAAATAATGCTTTCATTATATTCTTCC  350

seq1  TACCTGAATGAGAAAAACTTTAAATTTAATTTGTAATCATTTTCAAATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGAATGAGAAAAACTTTAAATTTAATTTGTAATCATTTTCAAATAT  400

seq1  TTTAACTGGAATGCATTTCCTGAAGAAGGTCATGATTTATAGCAGATTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACTGGAATGCATTTCCTGAAGAAGGTCATGATTTATAGCAGATTTA  450

seq1  TTCTCAACCTGTGGGTCATTATTCTCTTGGAGGTTAAACAATCTTTCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAACCTGTGGGTCATTATTCTCTTGGAGGTTAAACAATCTTTCACA  500

seq1  GGGTTCACCTAAGACCATCAGGAAACACAGATATTTACATTATGATTAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCACCTAAGACCATCAGGAAACACAGATATTTACATTATGATTAAT  550

seq1  ATCAGTAGTAATATTAACTAGGAAGTACCAATGAAATAATTTCATGGTCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTAGTAATATTAACTAGGAAGTACCAATGAAATAATTTCATGGTCG  600

seq1  GGGTCACCACAACATGAGGTACTGTATTAAAGGGTAGCAGCATTAGGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCACCACAACATGAGGTACTGTATTAAAGGGTAGCAGCATTAGGAGG  650

seq1  TTAGAACGCACTGGTATAGAGCACTTGGAATATTGCTTTACAGGCACAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAACGCACTGGTATAGAGCACTTGGAATATTGCTTTACAGGCACAGA  700

seq1  TCTGTTAACATCATGGTT-CCTTTACTTAAGTTAGGTGATGAAAGAATTA  749
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TCTGTTAACATCATGGTTCCCTTTACTTAAGTTAGGTGATGAAAGAATTA  750

seq1  GGGAAGAATTAATAGATAGCAAAAGATGAAAGGAAAAAATTCCATGTATC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGAATTAATAGATAGCAAAAGATGAAAGGAAAAAATTCCATGTATC  800

seq1  AATACAAGATAAATAGACTAAGGTTTATTTTTAAAAATCAAACTG-TTGG  848
      ||||||||||||||||||||| ||||||||||||||||||||||| ||||
seq2  AATACAAGATAAATAGACTAAAGTTTATTTTTAAAAATCAAACTGTTTGG  850

seq1  TGGCATACAGAGGGCCACCACAGGTTTAAAGCTCATGGTCTCTTCATGAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATACAGAGGGCCACCACAGGTTTAAAGCTCATGGTCTCTTCATGAG  900

seq1  ATGTCTGTGTGTTCAAATGTGTGTGTATGTGTGTGTGTTTTCAATATATT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGTGTGTTCAAATGTGTGTGTATGTGTGTGTGTTTTCAATATATT  950

seq1  TGTTTCTTGTGCTTTTTCTTTGGCTCTTTTTTCTGTTAATTGGTTTGTTT  998
      || ||| |||||||||||||||||||||||||||||  | ||||||||||
seq2  TG-TTCCTGTGCTTTTTCTTTGGCTCTTTTTTCTGT--AATGGTTTGTTT  997

seq1: chr5_88316087_88317026
seq2: B6Ng01-204N08.g_66_1014 (reverse)

seq1  TTCTCTTTTTGCCTTTCTTACTGGGGGTTG-ATTTC-AATTTCTTTCTTT  48
      |||| |||| |||||||||||||||||||| ||||| |||||||| ||| 
seq2  TTCT-TTTTGGCCTTTCTTACTGGGGGTTGAATTTCAAATTTCTTCCTTA  49

seq1  CTTTCTTTC--TTTCTTTCT-TTCTTTC-TTTCTTTCTTTCTTTCTTT--  92
      | |||||||   |  ||||| | ||| |  |   |   ||||  | ||  
seq2  CATTCTTTCGTGTAGTTTCTGTGCTTACAATGAATAGATTCTGACATTAC  99

seq1  CTTTCTTTCTTTCTTTCTTTCCTTGTCTTCCTTCC-TTCCTTCCTTCCTT  141
        |  || |  ||  ||| |||| ||||||||||| |||||||| |||||
seq2  GATAATTACAATCAATCTATCCTAGTCTTCCTTCCATTCCTTCCATCCTT  149

seq1  CCTTCCTTCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC  191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTTCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC  199

seq1  TTCCTTCCTTTCTCCCTTTCTTTCTCATAAAAGAGT-AACCATTGCCTTC  240
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTCCTTCCTTTCTCCCTTTCTTTCTCATAAAAGAGTAAACCATTGCCTTC  249

seq1  TATCTTTGCTTTTCACAGGGTGCCTTCAACTCCTGGATTCCTCCCTTCCC  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTGCTTTTCACAGGGTGCCTTCAACTCCTGGATTCCTCCCTTCCC  299

seq1  TGGGTTTCTGCAGCAGCAGCAGGCTCAGGTCTCAGGACGCCCACAGTTTA  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTCTGCAGCAGCAGCAGGCTCAGGTCTCAGGACGCCCACAGTTTA  349

seq1  CTCTCTCAACACTAGAGAGCTTTGCTGGACTATTCCCAAATCAGATACCT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCAACACTAGAGAGCTTTGCTGGACTATTCCCAAATCAGATACCT  399

seq1  TTATCAAGACAGGTTGGACTTGCCCAAGGAGGCCAGGCTGGCCAGCCAGA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAAGACAGGTTGGACTTGCCCAAGGAGGCCAGGCTGGCCAGCCAGA  449

seq1  CCTCTCTCAGCAGCAGACACCACCTCAGACCCAGCAGAGTGCTAGCCCTG  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTCAGCAGCAGACACCACCTCAGACCCAGCAGAGTGCTAGCCCTG  499

seq1  TAAGTGAAGCTTCTTCCATCTTGCTGCTGTCAGATAGGGTATGAAGGTTA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGAAGCTTCTTCCATCTTGCTGCTGTCAGATAGGGTATGAAGGTTA  549

seq1  TTGTGAATTAGCTTGAAAATATGACAGGATTTTTATGAAGTTTTCTCCTC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAATTAGCTTGAAAATATGACAGGATTTTTATGAAGTTTTCTCCTC  599

seq1  TACTATTGCAACCACCCCTGAAAGTATCTCCTTATATAGTCTGATTTTTA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATTGCAACCACCCCTGAAAGTATCTCCTTATATAGTCTGATTTTTA  649

seq1  ACATAAAAATAACATTAAAACCAATTGCCCTAGAATATAGTCAATAACCA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAAAATAACATTAAAACCAATTGCCCTAGAATATAGTCAATAACCA  699

seq1  GGAACTAAAACACCATGTGGGAGCAGAATTTGTATGAATTATAGCTCATG  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTAAAACACCATGTGGGAGCAGAATTTGTATGAATTATAGCTCATG  749

seq1  TAGAAGAGAAACTTTAATGGAGCATTGCTAATGAAATGATTCATGGGAAG  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGAGAAACTTTAATGGAGCATTGCTAATGAAATGATTCATGGGAAG  799

seq1  CTAGATCTAGGGAAATCAAACCAAGAATTGCAAATAACAAGTCAAGAGTA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATCTAGGGAAATCAAACCAAGAATTGCAAATAACAAGTCAAGAGTA  849

seq1  ATTTGCTTATATGACTTTGTGACTATTCTTTTCCTCAGATGTCCTATGTG  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCTTATATGACTTTGTGACTATTCTTTTCCTCAGATGTCCTATGTG  899

seq1  GTACCTGTCAAAGTACCTCAAGATCAAACACAGGTAAGTGAAGAGAATTC  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTGTCAAAGTACCTCAAGATCAAACACAGGTAAGTGAAGAGAATTC  949