BAC Information

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BAC

Clone NameB6Ng01-204O07
Chromosome5 (Build37)
Map Location 20,466,478 - 20,616,481
singlet/doubletdoublet
Overlap genePtpn12
Upstream geneMagi2, LOC100041850, Phtf2, LOC622367, Tmem60, Rsbn1l
Downstream geneEG626903, A530088I07Rik, Fgl2, AI847670, Fbxl13, LOC625004, LOC667253, Armc10, AB112350, Pmpcb, Dnajc2, Psmc2, Slc26a5, Reln, Dnaja1-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-204O07.bB6Ng01-204O07.g
ACCGA024714GA024715
length1,122878
definitionB6Ng01-204O07.b B6Ng01-204O07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,615,366 - 20,616,481)(20,466,478 - 20,467,141)
sequence
gaattcatcacactcactctcaaggacatacataagaacatggactcaat
tatgataaattaatattcatacagtgccagtgacacacgtgagcctgact
tggattgatcagctctttctaaataaatcctacttataagaaagacagtt
gcatcaagagatcaattactttctacaaaacctgattatgtttcattttg
ttttttcttgggatagagacacactctgtagtccaggctggcatcaaaca
ggttgtttttgttttgtttttttttaaaaaatattaacttcaaacttatc
acgatatcaggtttgatgcaattatgtcaacacttgcattgtctgattgt
atcagtatctactgttattatctgcaatatctatcatctatttacatata
atatgtatagatatagaataagacttcacatttgggagctgacattagta
tattaatatactgtccatattcaaactaccagtttcccaataatggttgg
tatgtgtgagccagtgagtagtggctcttgttcaggtaggtgtgtgggta
acattcagaggcaaaggtcagatgtcttctttgattactttccacctttc
ttttcatctgagacaggtctcagggtctgtcacagacccgaactcaccaa
caggctaagctagtcagccaaggcactccagggatctcttccatctccac
ccactcccaggacggggcttcccaaccagcactttaccaactgaatcatc
actccaacactcacaaactgatctttgtgggaaattatctctgccccaga
atcactcattaaactgggcatgatggtgcacacctctgtttcccagcact
cagagtagaaagcaatagagccaggagttcagggtcactctcagccccac
attcagttcaggccagccaaggctctaggagattctgtcataaactagct
aacacaaaagcaaaaccgtcctggcagatgactcagcaggtaaaggtgct
tggctcccagtccgggagcttcagtccatcactggtatccacatggttga
caggaaagaaccaactcccaagaagctgtcctcctgatcttcctgccgtg
tttttattgcagttttgactgc
gaattcacagaggagggtggctattactatgatctaaagtttagaatatt
ttcttttattaggtattttctttatttgcatttcaaatgttacccccttc
ctagcttcccctctgaaaattccttatcctttctcccctccccctagaat
agtttcaatttcttagtttgtaagggtccaagatttgccaaagaatgata
ctctggactcaaacagtatataaatgcaaagagtgttttattctgcagac
gcccagcatgctggaacctcccattaccaagatgagagacaaccaagtga
gctcgcaggcctgatttaaagcacattaggggattttagggtaggtgaca
tttaccttgctcaatttctagggacattccattaccagggtgtagaggct
ggaaactgctgcggatccactatccttgcctcaggccaggtagcaggcag
cttctgaggcctggatttgcctggacttgcccagttcttggaaatagaca
tttaggcctcacctcctgaactgccaatttgaagcctgtcaatggagtca
gcctagccttctcagttactgctctatttctgtgaagagacacatgacca
aggcaactcttttttttttttaaagatttatttattattatgtctaagtg
ctgtcttcagatgcaccagaagagggcgtcagatcttattatggaaggtt
tgtgagccaccatgtggtttgctgggatttgaactcaggaccctcggaag
agcagtcggtgttcttaaccactgagccatctctccagcccccaaggcaa
ctctttataagagaaagcaatcaattgggggcttccttatagttttagag
aattagttcatgatgttcatgggaggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_20615366_20616481
seq2: B6Ng01-204O07.b_46_1167 (reverse)

seq1  GCAGTCAAAACTGCACATAAAACAC-GCAGGGAGATCA-GAGGACAGC-T  47
      |||||||||||||||   ||||||| ||||| |||||| ||||||||| |
seq2  GCAGTCAAAACTGCAATAAAAACACGGCAGGAAGATCAGGAGGACAGCTT  50

seq1  CTTGGGAGTTGGTTCTTTCCTGTC-ACCATGTGG-TTCCAGTGATGGGAC  95
      |||||||||||||||||||||||| ||||||||| | |||||||| ||||
seq2  CTTGGGAGTTGGTTCTTTCCTGTCAACCATGTGGATACCAGTGAT-GGAC  99

seq1  TGAGGCTCCCGG-CTGGGAGCC-AGCACCTTTACCTGCTGAGTCATCTTG  143
      ||| |||||||| ||||||||| |||||||||||||||||||||||| ||
seq2  TGAAGCTCCCGGACTGGGAGCCAAGCACCTTTACCTGCTGAGTCATC-TG  148

seq1  CCAGGACGGTTTTGCTTTTGTGTTAGCTAGTTTATGACAGAATCTCCTAG  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGACGGTTTTGCTTTTGTGTTAGCTAGTTTATGACAGAATCTCCTAG  198

seq1  AGCCTTGGCTGGCCCTGAACTGAATGTGGGGCTGAGAGTGACCCTGAACT  243
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AGCCTTGGCTGG-CCTGAACTGAATGTGGGGCTGAGAGTGACCCTGAACT  247

seq1  CCTGGCTCTATTGC-TTCTACTCTGAGTGCTGGG-AACAGAGGTGTGCAC  291
      |||||||||||||| ||||||||||||||||||| |||||||||||||||
seq2  CCTGGCTCTATTGCTTTCTACTCTGAGTGCTGGGAAACAGAGGTGTGCAC  297

seq1  CATCATGCCCAGTTTAATGAGTGATTCTGGGGCAGAGATAATTTCCCACA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATGCCCAGTTTAATGAGTGATTCTGGGGCAGAGATAATTTCCCACA  347

seq1  AAGATCAGTTTGTGAGTGTTGGAGTGATGATTCAGTTGGTAAAGTGCTGG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCAGTTTGTGAGTGTTGGAGTGATGATTCAGTTGGTAAAGTGCTGG  397

seq1  TTGGGAAGCCCCGTCCTGGGAGTGGGTGGAGATGGAAGAGATCCCTGGAG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAAGCCCCGTCCTGGGAGTGGGTGGAGATGGAAGAGATCCCTGGAG  447

seq1  TGCCTTGGCTGACTAGCTTAGCCTGTTGGTGAGTTCGGGTCTGTGACAGA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTGGCTGACTAGCTTAGCCTGTTGGTGAGTTCGGGTCTGTGACAGA  497

seq1  CCCTGAGACCTGTCTCAGATGAAAAGAAAGGTGGAAAGTAATCAAAGAAG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAGACCTGTCTCAGATGAAAAGAAAGGTGGAAAGTAATCAAAGAAG  547

seq1  ACATCTGACCTTTGCCTCTGAATGTTACCCACACACCTACCTGAACAAGA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTGACCTTTGCCTCTGAATGTTACCCACACACCTACCTGAACAAGA  597

seq1  GCCACTACTCACTGGCTCACACATACCAACCATTATTGGGAAACTGGTAG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTACTCACTGGCTCACACATACCAACCATTATTGGGAAACTGGTAG  647

seq1  TTTGAATATGGACAGTATATTAATATACTAATGTCAGCTCCCAAATGTGA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATATGGACAGTATATTAATATACTAATGTCAGCTCCCAAATGTGA  697

seq1  AGTCTTATTCTATATCTATACATATTATATGTAAATAGATGATAGATATT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTATTCTATATCTATACATATTATATGTAAATAGATGATAGATATT  747

seq1  GCAGATAATAACAGTAGATACTGATACAATCAGACAATGCAAGTGTTGAC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATAATAACAGTAGATACTGATACAATCAGACAATGCAAGTGTTGAC  797

seq1  ATAATTGCATCAAACCTGATATCGTGATAAGTTTGAAGTTAATATTTTTT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTGCATCAAACCTGATATCGTGATAAGTTTGAAGTTAATATTTTTT  847

seq1  AAAAAAAAACAAAACAAAAACAACCTGTTTGATGCCAGCCTGGACTACAG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAACAAAACAAAAACAACCTGTTTGATGCCAGCCTGGACTACAG  897

seq1  AGTGTGTCTCTATCCCAAGAAAAAACAAAATGAAACATAATCAGGTTTTG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTCTCTATCCCAAGAAAAAACAAAATGAAACATAATCAGGTTTTG  947

seq1  TAGAAAGTAATTGATCTCTTGATGCAACTGTCTTTCTTATAAGTAGGATT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGTAATTGATCTCTTGATGCAACTGTCTTTCTTATAAGTAGGATT  997

seq1  TATTTAGAAAGAGCTGATCAATCCAAGTCAGGCTCACGTGTGTCACTGGC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAGAAAGAGCTGATCAATCCAAGTCAGGCTCACGTGTGTCACTGGC  1047

seq1  ACTGTATGAATATTAATTTATCATAATTGAGTCCATGTTCTTATGTATGT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTATGAATATTAATTTATCATAATTGAGTCCATGTTCTTATGTATGT  1097

seq1  CCTTGAGAGTGAGTGTGATGAATTC  1116
      |||||||||||||||||||||||||
seq2  CCTTGAGAGTGAGTGTGATGAATTC  1122

seq1: chr5_20466478_20467141
seq2: B6Ng01-204O07.g_65_728

seq1  GAATTCACAGAGGAGGGTGGCTATTACTATGATCTAAAGTTTAGAATATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGAGGAGGGTGGCTATTACTATGATCTAAAGTTTAGAATATT  50

seq1  TTCTTTTATTAGGTATTTTCTTTATTTGCATTTCAAATGTTACCCCCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTATTAGGTATTTTCTTTATTTGCATTTCAAATGTTACCCCCTTC  100

seq1  CTAGCTTCCCCTCTGAAAATTCCTTATCCTTTCTCCCCTCCCCCTAGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTTCCCCTCTGAAAATTCCTTATCCTTTCTCCCCTCCCCCTAGAAT  150

seq1  AGTTTCAATTTCTTAGTTTGTAAGGGTCCAAGATTTGCCAAAGAATGATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCAATTTCTTAGTTTGTAAGGGTCCAAGATTTGCCAAAGAATGATA  200

seq1  CTCTGGACTCAAACAGTATATAAATGCAAAGAGTGTTTTATTCTGCAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGACTCAAACAGTATATAAATGCAAAGAGTGTTTTATTCTGCAGAC  250

seq1  GCCCAGCATGCTGGAACCTCCCATTACCAAGATGAGAGACAACCAAGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGCATGCTGGAACCTCCCATTACCAAGATGAGAGACAACCAAGTGA  300

seq1  GCTCGCAGGCCTGATTTAAAGCACATTAGGGGATTTTAGGGTAGGTGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGCAGGCCTGATTTAAAGCACATTAGGGGATTTTAGGGTAGGTGACA  350

seq1  TTTACCTTGCTCAATTTCTAGGGACATTCCATTACCAGGGTGTAGAGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCTTGCTCAATTTCTAGGGACATTCCATTACCAGGGTGTAGAGGCT  400

seq1  GGAAACTGCTGCGGATCCACTATCCTTGCCTCAGGCCAGGTAGCAGGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACTGCTGCGGATCCACTATCCTTGCCTCAGGCCAGGTAGCAGGCAG  450

seq1  CTTCTGAGGCCTGGATTTGCCTGGACTTGCCCAGTTCTTGGAAATAGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGAGGCCTGGATTTGCCTGGACTTGCCCAGTTCTTGGAAATAGACA  500

seq1  TTTAGGCCTCACCTCCTGAACTGCCAATTTGAAGCCTGTCAATGGAGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGCCTCACCTCCTGAACTGCCAATTTGAAGCCTGTCAATGGAGTCA  550

seq1  GCCTAGCCTTCTCAGTTACTGCTCTATTTCTGTGAAGAGACACATGACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGCCTTCTCAGTTACTGCTCTATTTCTGTGAAGAGACACATGACCA  600

seq1  AGGCAACTCTTTTTTTTTTTTAAAGATTTATTTATTATTATGTCTAAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAACTCTTTTTTTTTTTTAAAGATTTATTTATTATTATGTCTAAGTG  650

seq1  CTGTCTTCAGATGC  664
      ||||||||||||||
seq2  CTGTCTTCAGATGC  664