BAC Information

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BAC

Clone NameB6Ng01-205L06
Chromosome5 (Build37)
Map Location 137,999,103 - 138,150,738
singlet/doubletdoublet
Overlap geneActl6b, Trfr2, Mospd3, EG640050, Pcolce, Fbxo24, Lrch4, Sap25, Irs3, Hrbl
Upstream geneCutl1, Mylc2pl, Emid2, LOC677021, Rabl5, Fis1, Cldn15, Znhit1, Plod3, LOC639992, Vgf, Ap1s1, Serpine1, Trim56, Muc3, LOC100040941, Ache, 2700038N03Rik, Ars2, Trip6, Slc12a9, Ephb4, Zan, EG665591, Epo, Pop7, EG666372, Perq1, Gnb2
Downstream geneLOC624083, 6430598A04Rik, Tsc22d4, 2010007H12Rik, Bcdin3, Zcwpw1, Pilra, Pilrb1, Pilrb2, LOC100041016, LOC100041027, Cyp3a13, LOC666429, Gje1, Azgp1, EG243302, LOC100041050, Smok3a, Smok3b, Smok3c, Zkscan1, Zscan21, Zfp113, Cops6, Mcm7, Ap4m1, Taf6, 2610019P18Rik, BC038925, Gm454, BC055004, 0910001L09Rik, BC037034, Gal3st4, Gpc2, Stag3, Got2-ps1, 2610020C11Rik, LOC433955, EG666533, 1700123K08Rik, Zfp68, LOC665882, A430033K04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-205L06.bB6Ng01-205L06.g
ACCGA025315GA025316
length1,135753
definitionB6Ng01-205L06.b B6Ng01-205L06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(137,999,103 - 138,000,231)(138,150,136 - 138,150,738)
sequence
gaattccttttcttgagtcactcttttgttttcgtggagcggagccttca
gaaatcacctttgatcacaggaagtatttcttctgagatgctgaattgat
aatttatctaggtatcatactctaggttgcaaaacatttttcttgagatc
ttgtaagcatttccttcctttgccctagaatatctatcgatgttcaatat
taattaatgctgatattgagaagtctagagccatcttactggttttttcc
acggagggtatttagacctttcactcaattctaagtggtttaaaacctct
ccatggtttgtacatgagacgttggcacatttcattaattattctggaaa
cctttgcctttcaattaagtgaaaaaaaattacatcattttcttacctat
gtgtatctgtgtttcttgttcctgtctgtgagtgtttttcttatttctgc
atgtgtgtgtctgtgttcttatttctgtgtgtctgtttcttatttctgtg
tgtgtgtgtgtgtgtttcttagttccgcatgtgtctgtgtttcctacttc
tgtgtgttggtgtctgagggccaagtggacatcagaggacagcttgcaaa
gcttggtcctcctcttctaccatgtaggatctgggaatcaaactagcatc
aagtttggtcacaagaacccattggcccaccgaataaaaacaaattaaat
taggcttttactacttatatttctccatttcctctgttcccgcttcaggg
aatctcattactcatattgtgtgccccctgagctgggtcctcgaattttc
ttacgttttccctttctgctttccattgttacctgttcctctaacttcca
agatattgccttaacttcatagttccagccatcttactgagttcatcata
tcaccctcctgagttgtttttttgaggcacttgtttctcagtgtagccca
accctagctgtactggaactcactctgtacatcaggctcaaatttaaaga
tccaacctgctctgcttctggagtgctgggatttaagggcgtgcatcaca
actactggctatactctgaatctctaatctcacaagctctttagtctcca
gggaatgtcttttttataatttagtcctcctcctc
gaattcattacatactcaaacatgactttaaactcctggtccccttgttc
tcaatgcctacatttttgggttacagatgtgcaacataaatgttctattt
attcatttgtttattttattttttgagacattctcattttataactcagg
acaatttggggctcattctatagctgatgtaggctcaaacttaggtgctc
cagtgtcttgctagtgaattaaaacttaaaaaaaaaaaaaaaaaaagagg
ccaggtgtggtggcgcacgcctttaatcccagcattcaggaggcagaggc
agacagatttctgagttcgaggccagcctggtttacagagtgagttccag
gacagccaaggctacacagagaaaccctgtctcggaaaaagaaagagaga
gagagagagagagagagagagagagagagagagagagagagagagagaga
gagaaaggaaaggaaaggaaaggggaaaggaaaaaggaaaaaggaaaaag
gaaaaaagaagaaaagacctatctcaaaactcagccctggctgtcctgga
attcactatgtagcacagggtggccttgaactcacagagacccatttgcc
actgcctcatgagtgctggatttaaaaatcgtactcgaccacacccagct
ctgttctactgtttaagagactttctttttcatctttatttcctagccct
tgagccagggtctctcacagagcctacagctcagctggctgccagaagcc
ccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_137999103_138000231
seq2: B6Ng01-205L06.b_44_1178

seq1  GAATTCCTTTTCTTGAGTCACTCTTTTGTTTTCGTGGAGCGGAGCCTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTTCTTGAGTCACTCTTTTGTTTTCGTGGAGCGGAGCCTTCA  50

seq1  GAAATCACCTTTGATCACAGGAAGTATTTCTTCTGAGATGCTGAATTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCACCTTTGATCACAGGAAGTATTTCTTCTGAGATGCTGAATTGAT  100

seq1  AATTTATCTAGGTATCATACTCTAGGTTGCAAAACATTTTTCTTGAGATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATCTAGGTATCATACTCTAGGTTGCAAAACATTTTTCTTGAGATC  150

seq1  TTGTAAGCATTTCCTTCCTTTGCCCTAGAATATCTATCGATGTTCAATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAGCATTTCCTTCCTTTGCCCTAGAATATCTATCGATGTTCAATAT  200

seq1  TAATTAATGCTGATATTGAGAAGTCTAGAGCCATCTTACTGGTTTTTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAATGCTGATATTGAGAAGTCTAGAGCCATCTTACTGGTTTTTTCC  250

seq1  ACGGAGGGTATTTAGACCTTTCACTCAATTCTAAGTGGTTTAAAACCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGAGGGTATTTAGACCTTTCACTCAATTCTAAGTGGTTTAAAACCTCT  300

seq1  CCATGGTTTGTACATGAGACGTTGGCACATTTCATTAATTATTCTGGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGTTTGTACATGAGACGTTGGCACATTTCATTAATTATTCTGGAAA  350

seq1  CCTTTGCCTTTCAATTAAGTGAAAAAAAATTACATCATTTTCTTACCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGCCTTTCAATTAAGTGAAAAAAAATTACATCATTTTCTTACCTAT  400

seq1  GTGTATCTGTGTTTCTTGTTCCTGTCTGTGAGTGTTTTTCTTATTTCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATCTGTGTTTCTTGTTCCTGTCTGTGAGTGTTTTTCTTATTTCTGC  450

seq1  ATGTGTGTGTCTGTGTTCTTATTTCTGTGTGTCTGTTTCTTATTTCTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTGTCTGTGTTCTTATTTCTGTGTGTCTGTTTCTTATTTCTGTG  500

seq1  TGTGTGTGTGTGTGTTTCTTAGTTCCGCATGTGTCTGTGTTTCCTACTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTTTCTTAGTTCCGCATGTGTCTGTGTTTCCTACTTC  550

seq1  TGTGTGTTGGTGTCTGAGGGCCAAGTGGACATCAGAGGACAGCTTGCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTTGGTGTCTGAGGGCCAAGTGGACATCAGAGGACAGCTTGCAAA  600

seq1  GCTTGGTCCTCCTCTTCTACCATGTAGGATCTGGGAATCAAACTAGCATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGTCCTCCTCTTCTACCATGTAGGATCTGGGAATCAAACTAGCATC  650

seq1  AAGTTTGGTCACAAGAACCCATTGGCCCACCGAATAAAAACAAATTAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTGGTCACAAGAACCCATTGGCCCACCGAATAAAAACAAATTAAAT  700

seq1  TAGGCTTTTACTACTTATATTTCTCCATTTCCTCTGTTCCCGCTTCAGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTTTTACTACTTATATTTCTCCATTTCCTCTGTTCCCGCTTCAGGG  750

seq1  AAATCTCATTACTCATATTGTGTGCCCCCTGAGCT-GGTCCTCGAATTTT  799
       |||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  -AATCTCATTACTCATATTGTGTGCCCCCTGAGCTGGGTCCTCGAATTTT  799

seq1  CTTACGTTTTCCC-TTCTGCTTTCCATTGTTACCTGTTCCTCTAACTTCC  848
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTTACGTTTTCCCTTTCTGCTTTCCATTGTTACCTGTTCCTCTAACTTCC  849

seq1  AAGATATTGCCTTAACTTCATAG-TCCAGCCATCTTACTGAGTTCATCAT  897
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AAGATATTGCCTTAACTTCATAGTTCCAGCCATCTTACTGAGTTCATCAT  899

seq1  ATCA-CCTCCTGAGTTGTTTTTTTGAGGCAC-TGTTTCTCAGTGTAG-CC  944
      |||| |||||||||||||||||||||||||| ||||||||||||||| ||
seq2  ATCACCCTCCTGAGTTGTTTTTTTGAGGCACTTGTTTCTCAGTGTAGCCC  949

seq1  AACCCTAGCTGTACTGGAACTCACTCTGTACATCAGGCTCAAATTTAAAG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTAGCTGTACTGGAACTCACTCTGTACATCAGGCTCAAATTTAAAG  999

seq1  ATCC-ACCTGCCTCTGCTTCCTGAGTGCTGGGA-TTAAAGGCGTGCATCA  1042
      |||| ||||| |||||||||  ||||||||||| |||| |||||||||||
seq2  ATCCAACCTG-CTCTGCTTCTGGAGTGCTGGGATTTAAGGGCGTGCATCA  1048

seq1  CAACTACCTGGCT-TACTCCTGAATTCTTAATCTCCACAAGCTCTTTTAG  1091
      |||||| |||||| |||| ||||||   |||||| ||||||||| |||||
seq2  CAACTA-CTGGCTATACT-CTGAATCTCTAATCT-CACAAGCTC-TTTAG  1094

seq1  TCTCCA-GGAATGTTCTTTTTATTATTT--TCCTCCTCCTC  1129
      |||||| |||||||  ||||||| ||||  |||||||||||
seq2  TCTCCAGGGAATGTCTTTTTTATAATTTAGTCCTCCTCCTC  1135

seq1: chr5_138150136_138150738
seq2: B6Ng01-205L06.g_68_670 (reverse)

seq1  AGTGGCAAATGGGTCTCTGTGAGTTCAAGGCCACCCTGTGCTACATAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCAAATGGGTCTCTGTGAGTTCAAGGCCACCCTGTGCTACATAGTG  50

seq1  AATTCCAGGACAGCCAGGGCTGAGTTTTGAGATAGGTCTTTTCTTCTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCAGGACAGCCAGGGCTGAGTTTTGAGATAGGTCTTTTCTTCTTTT  100

seq1  TTCCTTTTTCCTTTTTCCTTTTTCCTTTCCCCTTTCCTTTCCTTTCCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTTTCCTTTTTCCTTTTTCCTTTCCCCTTTCCTTTCCTTTCCTTT  150

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  200

seq1  CTCTCTCTCTTTCTTTTTCCGAGACAGGGTTTCTCTGTGTAGCCTTGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTTTCTTTTTCCGAGACAGGGTTTCTCTGTGTAGCCTTGGCT  250

seq1  GTCCTGGAACTCACTCTGTAAACCAGGCTGGCCTCGAACTCAGAAATCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGAACTCACTCTGTAAACCAGGCTGGCCTCGAACTCAGAAATCTG  300

seq1  TCTGCCTCTGCCTCCTGAATGCTGGGATTAAAGGCGTGCGCCACCACACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCTGCCTCCTGAATGCTGGGATTAAAGGCGTGCGCCACCACACC  350

seq1  TGGCCTCTTTTTTTTTTTTTTTTTTTAAGTTTTAATTCACTAGCAAGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTCTTTTTTTTTTTTTTTTTTTAAGTTTTAATTCACTAGCAAGACA  400

seq1  CTGGAGCACCTAAGTTTGAGCCTACATCAGCTATAGAATGAGCCCCAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGCACCTAAGTTTGAGCCTACATCAGCTATAGAATGAGCCCCAAAT  450

seq1  TGTCCTGAGTTATAAAATGAGAATGTCTCAAAAAATAAAATAAACAAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGAGTTATAAAATGAGAATGTCTCAAAAAATAAAATAAACAAATG  500

seq1  AATAAATAGAACATTTATGTTGCACATCTGTAACCCAAAAATGTAGGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAGAACATTTATGTTGCACATCTGTAACCCAAAAATGTAGGCAT  550

seq1  TGAGAACAAGGGGACCAGGAGTTTAAAGTCATGTTTGAGTATGTAATGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAACAAGGGGACCAGGAGTTTAAAGTCATGTTTGAGTATGTAATGAA  600

seq1  TTC  603
      |||
seq2  TTC  603