BAC Information

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BAC

Clone NameB6Ng01-205O01
Chromosome5 (Build37)
Map Location 86,372,600 - 86,373,706
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneCenpc1, LOC100039521, AI586015, Ube1l2, Gnrhr, Tmprss11c, Tmprss11d, Tmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e, A730098D12Rik, LOC622056, Ugt2b34, Ugt2b1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-205O01.bB6Ng01-205O01.g
ACCGA025438GA025439
length1,0971,169
definitionB6Ng01-205O01.b B6Ng01-205O01.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttcacagtgctgcatgtttattaatggacctcctgttcattgtg
atgtggtagcgttaggctcatgtcagtgatatggcaggcggcaattaaga
gttgctttagttctgaaagaaatgaaattagccactgatcagtgacagag
acaactcaacatcctggtaagtgcatgcagaaagaagaaagaaatataag
agccacaaagagacaagaagaagggaagatatttgatgaattttctctgt
tgcagacatgacaacaagggacagcagtaatgtgcaaaaaagaagtaatg
gaaaatactggaatggaaaagactaaaatggtcaggaaggtttttatttt
tatttttattttttttattttccatctcaaccacagattcccctccttcc
tattctctcagcactgcctccccccaagcccctttccactcctctctttc
tctatagaaaaggaccggcttcccaggatatcaaccagccctggcacatc
aagttacagtaagatgaggcacttcctcttcaattaaggctagacaaggc
aacccagtaggggagcctttgcaagggctcaggttccttttacaaggaga
tttttcagctcactctgttaaatatatttcaagatgcagaacagcttctg
tgagctaggcttgtagcctctatgaaggtctgggcatccagtgtggtggc
acctggtggcagaggcctggaatcctagcatttggatggtggaggcagta
agatcagagttgaggatcatctcagcttcattgtaaatttgaggccattc
tctgtaacttcggcttgttattttcattagtgtatgtttttgagaggacc
cccaattaattactatttaacccgtgttctcaaacagaataagaattatc
aggcaagaatttactgagagtgggagcagaaagtctgtcagcaagagttt
gctagggagctctgtaggctctttactgaatggatgtggtggagatagaa
gaaaaaaaaagccacaatggtttccatgctgagaatttcatgccaataga
tgccatgagtctttttccaattttattagaaaattttctcgtacatt
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtgaagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
gagaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagagacggagtttggagctgagatga
aaggatggaccatgtagagactgccatagccagggatccaccccataatc
agcatccaaacgctgacaccatttgcatacactagcaagatttttatttg
aaaggacacagatgtagctgtctcttgtgagactatgccggggcccagca
acacagaagtggatgctcacagtcagctaatggatggatcatagggctcc
caatggaggagctagaagaaagtagccaatgagctaaagggattctgcaa
ccctattaggttggaacacatttattggagctaactagtaccccgggagg
ctcttggactctaagctggcaatattattccaaaggattgtccttagccg
ggccttcactgggaaaaggaggtcccaattggtacttgctaacctttaaa
tttaactccccactgtact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_86372600_86373706
seq2: B6Ng01-205O01.b_44_1140 (reverse)

seq1  AATGTAAATGAAGAAAATGTCTAATAAAAAATTGAAAAAAGAATTCATGG  50
      |||||  | ||  ||| | ||||||  ||||||| |||||| | ||||||
seq2  AATGT--ACGAGAAAATTTTCTAAT--AAAATTGGAAAAAG-ACTCATGG  45

seq1  CATTCTTATTTGCATGAAAATCTCAGCATGGAACCCATTGTGCCTTTTTT  100
      |||   |||| |||||||| ||||||||||||| |||||||| |||||||
seq2  CAT--CTATTGGCATGAAATTCTCAGCATGGAAACCATTGTGGCTTTTTT  93

seq1  TTTCTTCTTATTCTCCACCACATCCATTCAGTAAAGAGCCTACAGAGCTC  150
      ||||||||   |||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCT--ATCTCCACCACATCCATTCAGTAAAGAGCCTACAGAGCTC  141

seq1  CCTAGCAAACTCTTGCTGACAGACTTCCTGCTCCCACTCTCAGTAAATTC  200
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CCTAGCAAACTCTTGCTGACAGACTTTCTGCTCCCACTCTCAGTAAATTC  191

seq1  TTGCCTGATAATTCTTATTCTGTTTGAGAACACGGGTTAAATAGTAATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTGATAATTCTTATTCTGTTTGAGAACACGGGTTAAATAGTAATTA  241

seq1  ATTGGGGGTCCTCTCAAAAACATACACTAATGAAAATAACAAGCCGAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGGGTCCTCTCAAAAACATACACTAATGAAAATAACAAGCCGAAGT  291

seq1  TACAGAGAATGGCCTCAAATTTACAATGAAGCCTGAGATGATCCTCAACT  350
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TACAGAGAATGGCCTCAAATTTACAATGAAG-CTGAGATGATCCTCAACT  340

seq1  CTGATCTTACTGCCTCCACCATCCAAATGCTAGGATTCCAGGCCTCTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCTTACTGCCTCCACCATCCAAATGCTAGGATTCCAGGCCTCTGCC  390

seq1  ACCAGGTGCCACCACACTGGATGCCCAGACCTTCATAGAGGCTACAAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGTGCCACCACACTGGATGCCCAGACCTTCATAGAGGCTACAAGCC  440

seq1  TAGCTCACAGAAGCTGTTCTGCATCTTGAAATATATTTAACAGAGTGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCACAGAAGCTGTTCTGCATCTTGAAATATATTTAACAGAGTGAGC  490

seq1  TGAAAAATCTCCTTGTAAAAGGAACCTGAGCCCTTGCAAAGGCTCCCCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAATCTCCTTGTAAAAGGAACCTGAGCCCTTGCAAAGGCTCCCCTA  540

seq1  CTGGGTTGCCTTGTCTAGCCTTAATTGAAGAGGAAGTGCCTCATCTTACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTTGCCTTGTCTAGCCTTAATTGAAGAGGAAGTGCCTCATCTTACT  590

seq1  GTAACTTGATGTGCCAGGGCTGGTTGATATCCTGGGAAGCCGGTCCTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTTGATGTGCCAGGGCTGGTTGATATCCTGGGAAGCCGGTCCTTTT  640

seq1  CTATAGAGAAAGAGAGGAGTGGAAAGGGGCTTGGGGGGAGGCAGTGCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGAGAAAGAGAGGAGTGGAAAGGGGCTTGGGGGGAGGCAGTGCTGA  690

seq1  GAGAATAGGAAGGAGGGGAATCTGTGGTTGAGATGGAAAATAAAAAAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATAGGAAGGAGGGGAATCTGTGGTTGAGATGGAAAATAAAAAAAAT  740

seq1  AAAAATAAAAATAAAAACCTTCCTGACCATTTTAGTCTTTTCCATTCCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAAAAATAAAAACCTTCCTGACCATTTTAGTCTTTTCCATTCCAG  790

seq1  TATTTTCCATTACTTCTTTTTTGCACATTACTGCTGTCCCTTGTTGTCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCCATTACTTCTTTTTTGCACATTACTGCTGTCCCTTGTTGTCAT  840

seq1  GTCTGCAACAGAGAAAATTCATCAAATATCTTCCCTTCTTCTTGTCTCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCAACAGAGAAAATTCATCAAATATCTTCCCTTCTTCTTGTCTCTT  890

seq1  TGTGGCTCTTATATTTCTTTCTTCTTTCTGCATGCACTTACCAGGATGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCTCTTATATTTCTTTCTTCTTTCTGCATGCACTTACCAGGATGTT  940

seq1  GAGTTGTCTCTGTCACTGATCAGTGGCTAATTTCATTTCTTTCAGAACTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGTCTCTGTCACTGATCAGTGGCTAATTTCATTTCTTTCAGAACTA  990

seq1  AAGCAACTCTTAATTGCCGCCTGCCATATCACTGACATGAGCCTAACGCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAACTCTTAATTGCCGCCTGCCATATCACTGACATGAGCCTAACGCT  1040

seq1  ACCACATCACAATGAACAGGAGGTCCATTAATAAACATGCAGCACTGTGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACATCACAATGAACAGGAGGTCCATTAATAAACATGCAGCACTGTGA  1090

seq1  AGAATTC  1107
      |||||||
seq2  AGAATTC  1097