BAC Information

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BAC

Clone NameB6Ng01-206E10
Chromosome5 (Build37)
Map Location 10,288,741 - 10,448,421
singlet/doubletdoublet
Overlap geneLOC100041395
Upstream gene9330182L06Rik, Grm3, LOC100042768, LOC625446, LOC435832, LOC381612
Downstream geneEG625586, LOC242809, LOC623849, LOC100041408, LOC667880, EG667888, EG667901, EG667907, LOC667916, LOC100041472, EG545728, LOC100042819, LOC667942, LOC667948, EG667949, Speer1-ps1, EG667956, LOC667961, EG667967
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-206E10.bB6Ng01-206E10.g
ACCGA025733GA025734
length1,1871,186
definitionB6Ng01-206E10.b B6Ng01-206E10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,288,741 - 10,289,603)(10,447,237 - 10,448,421)
sequence
gaattccgactcgatgaaaataatcttaggaagcaagttttaaaagaagg
ttttagttgcttccttaaaaataaagtaataaagttaacatcaaggatag
aaggttaccactcctcataatagtaaataaaagctacataaaaggaaatg
caatgaggtttcataattatactaaaaggagaagtaggcatggaacaaat
ttgtgatcaagtaaaatccttcattctaggttaagtccaaggatgaagct
acaagtgtgcactatgataaagggaggcaatataaaactctttggtttga
acttataatgaacatatagaataaaacactgctttaaacttaatgtcaac
atcctcttataactccccatttgtaatattttaactattaggtaattttc
taaaaacttttgtcttaaaagtgctagagaaaagaaataaagtgttggct
tagggggctcttttccttccattcatacactaaatgtatatatctgtttg
tctatgcacaaatacttgtggagtagataaaacaggaggttgtgccaggc
caaaatgtctgtgagtaggaatgtatatgtgtctatgtgaattgtctata
taagtgaatttccttctttgcttttctttctctgtggttcacaaggagtt
aatgagccaggtcagtgaagggcacatgcctggcttggaagagaagggaa
cactagaaataaatcctttacctaattctctactactttacagcaaaatt
taattaccagaaaccaatatacttagcactaaaatagtaaaatgttaaag
aaatgtgaatattaccatttctgtcatctaggactggaaatcccatagga
gtcaggaaaggatatgacaagaaataatgatactgacattatggattaaa
tggacctaacaggcatctacaaaatatttcagcccaatacaaaagaatat
atgttctcctcattaccacatggatcatatccttctccaactttgactat
gtagtcagccataaaaacagcctcaacatatacaagaaaaattgaaataa
tgcctcgtatcttataagaccatcatggataactctggactttcacatta
cagaaaaatacccacaagcaattcaactgaatagaaaacagaacaacctc
ttctactcatgaatcttgggacaggtaagaaatactg
gaattctaattcaaacaaaacatcaaaccatgctattattgaactttaaa
tcttatcctaataaggaaaaaaagaatggcatttatcacaatagtcaaaa
aagtagaggcagaaagtataataacgaaaatggggttgtgggcagatgga
aagaaagaattaggagtcttgttagtaggtatggagatgggtgttctgcc
tatgaaaacattctaaaaatcagacagtagtaatgactatatcaaaaacc
actgaataaaaaatgaaatttgatgtatattcttgctcttcaaatatttc
tagaaagaaagcaaaactacaaatgaaaaatgaagaatagtaggaccatt
tgctaatggtcttactataatagtcttgctatactgctaagcaaacatga
tcatgtgatatgtatcacctaaagggactgttctgaaacagtgttgatta
agccaaagcacaagccaaaacaacagtctctttctgccatgagttgaaac
tatcataaaattgttagtagtttctcatttgtagaattttgaagttgagt
tccatataaccatagactttaatttgaaatcccatgtaacaatactttaa
atggattctgacattttgttaaacttcatctatattcaatagtgagctat
cacttaatgttgaaaataaatcacttaatattatagtggaatttatgcta
atgtaaaaataagtatagcttgatatgacatttcagattcaggaaactgc
tagtcattattgttttgtagaaatccatgctcatctactatttttgcatt
aatgctatatttataataaattaaaatctcattttaacataagtaaagaa
tgtaatgcaatatatagtatatgttattaacaatgttttttattaaaagt
ctagtattctctataataattccctataataaaatttccctataataaaa
tgggaaaatagaacagaaaataatatgtcccttaatgaaaatatctacag
aagacaaaatttaggaatctagtttattcccactagtttaaatgtcatat
caggataagatacagaataacttcaaattgttcagcttctaatatgcctg
atgagaaggaatagttattgcaataaggaatacatagttttttttttaat
ctggttccttgctgcttcacctgcctacctctttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_10288741_10289603
seq2: B6Ng01-206E10.b_367_1234

seq1  AATAAAACACTGCTTTAAACTTAATGTCAACATCCTCTTATAACTCCCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAACACTGCTTTAAACTTAATGTCAACATCCTCTTATAACTCCCCA  50

seq1  TTTGTAATATTTTAACTATTAGGTAATTTTCTAAAAACTTTTGTCTTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAATATTTTAACTATTAGGTAATTTTCTAAAAACTTTTGTCTTAAA  100

seq1  AGTGCTAGAGAAAAGAAATAAAGTGTTGGCTTAGGGGGCTCTTTTCCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTAGAGAAAAGAAATAAAGTGTTGGCTTAGGGGGCTCTTTTCCTTC  150

seq1  CATTCATACACTAAATGTATATATCTGTTTGTCTATGCACAAATACTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATACACTAAATGTATATATCTGTTTGTCTATGCACAAATACTTGT  200

seq1  GGAGTAGATAAAACAGGAGGTTGTGCCAGGCCAAAATGTCTGTGAGTAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTAGATAAAACAGGAGGTTGTGCCAGGCCAAAATGTCTGTGAGTAGG  250

seq1  AATGTATATGTGTCTATGTGAATTGTCTATATAAGTGAATTTCCTTCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATATGTGTCTATGTGAATTGTCTATATAAGTGAATTTCCTTCTTT  300

seq1  GCTTTTCTTTCTCTGTGGTTCACAAGGAGTTAATGAGCCAGGTCAGTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTCTTTCTCTGTGGTTCACAAGGAGTTAATGAGCCAGGTCAGTGAA  350

seq1  GGGCACATGCCTGGCTTGGAAGAGAAGGGAACACTAGAAATAAATCCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACATGCCTGGCTTGGAAGAGAAGGGAACACTAGAAATAAATCCTTT  400

seq1  ACCTAATTCTCTACTACTTTACAGCAAAATTTAATTACCAGAAACCAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAATTCTCTACTACTTTACAGCAAAATTTAATTACCAGAAACCAATA  450

seq1  TACTTAGCACTAAAATAGTAAAATGTTAAAGAAATGTGAATATTACCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAGCACTAAAATAGTAAAATGTTAAAGAAATGTGAATATTACCATT  500

seq1  TCTGTCATCTAGGACTGGAAATCCCATAGGAGTCAGG-AAGGATATGACA  549
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TCTGTCATCTAGGACTGGAAATCCCATAGGAGTCAGGAAAGGATATGACA  550

seq1  AGAAATAATGATACTGACATTATGGATTAAATGGACCTAACAGGCATCTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAATGATACTGACATTATGGATTAAATGGACCTAACAGGCATCTA  600

seq1  CAAAATATTTCAGCCCAATACAAAAGAATATATGTTCTCCTCATTACCAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATATTTCAGCCCAATACAAAAGAATATATGTTCTCCTCATTACCAC  650

seq1  ATGGATCATATCCTTCTCCAACTTTGACTATGTAGTCAGCCATAAAACAA  699
      |||||||||||||||||||||||||||||||||||||||||||||||  |
seq2  ATGGATCATATCCTTCTCCAACTTTGACTATGTAGTCAGCCATAAAAACA  700

seq1  GCCTCAACATATACAAG-AAAATTGAAATAATGCCTCGTATCTTATAAGA  748
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GCCTCAACATATACAAGAAAAATTGAAATAATGCCTCGTATCTTATAAGA  750

seq1  CCATCATGGATTAACTCTGGACTTTCACAATTACAG--AAATACCACAAA  796
      |||||||||| ||||||||||||||||| |||||||  |||||||   ||
seq2  CCATCATGGA-TAACTCTGGACTTTCAC-ATTACAGAAAAATACCCACAA  798

seq1  GCATTCAAACTG-ATAG-AAACAGAACAA-CTC-TCTACTCAATGATACC  842
      ||| |  ||||| |||| ||||||||||| ||| ||||||| ||||  | 
seq2  GCAATTCAACTGAATAGAAAACAGAACAACCTCTTCTACTC-ATGAATCT  847

seq1  TGGGACAGGGAAGAAATACTG  863
      ||||||||| |||||||||||
seq2  TGGGACAGGTAAGAAATACTG  868

seq1: chr5_10447237_10448421
seq2: B6Ng01-206E10.g_68_1253 (reverse)

seq1  GGAAAGA-GTAGCAGGGTGAGGCAGCAAGAGAAACAGATTAAAAAAAAAA  49
      ||||||| ||||   ||||| |||||||| ||| ||||||||||||||||
seq2  GGAAAGAGGTAGGCAGGTGAAGCAGCAAG-GAACCAGATTAAAAAAAAAA  49

seq1  CCTATGTAATCCCTTATTGC-ATAACT-TATCTTCTCATCAGGCATATTT  97
       |||||| || ||||||||| |||||| |  ||||||||||||||||  |
seq2  -CTATGT-ATTCCTTATTGCAATAACTATTCCTTCTCATCAGGCATA--T  95

seq1  TAGAAAGGCTGAAC-ATTTGAAGTTTATTCTTGTTATCTTATCTTGATAT  146
      |||||  ||||||| |||||||| |||||||   ||||||||| ||||||
seq2  TAGAA--GCTGAACAATTTGAAG-TTATTCT--GTATCTTATCCTGATAT  140

seq1  GACATTT-AACTAGTGTGAATAAAACTGAATTCTTAATTTTGTC-TCTGT  194
      ||||||| |||||||| |||||||   || | || ||||||||| |||||
seq2  GACATTTAAACTAGTGGGAATAAACTAGATTCCTAAATTTTGTCTTCTGT  190

seq1  AGATATTTTCATT-AGGGACATA-TATTTTCTGTTCTATTTT-CCATTTT  241
      ||||||||||||| ||||||||| |||||||||||||||||| |||||||
seq2  AGATATTTTCATTAAGGGACATATTATTTTCTGTTCTATTTTCCCATTTT  240

seq1  ATTATAGGG-AATTTTATTATAGGGAATTATTATAGAGAATACTAGACTT  290
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAGGGAAATTTTATTATAGGGAATTATTATAGAGAATACTAGACTT  290

seq1  TTAAT-AAAAACATTGTTAATAACATATACTATATATTGCATTACATTCT  339
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAAAAAACATTGTTAATAACATATACTATATATTGCATTACATTCT  340

seq1  TTACTTATGTTAAAATGAGATTTTAATTTATTATAAATATAGCATTAATG  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTATGTTAAAATGAGATTTTAATTTATTATAAATATAGCATTAATG  390

seq1  CAAAAATAGTAGATGAGCATGGATTTCTACAAAACAATAATGACTAGCAG  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATAGTAGATGAGCATGGATTTCTACAAAACAATAATGACTAGCAG  440

seq1  TTTCCTGAATCTGAAATGTCATATCAAGCTATACTTATTTTTACATTAGC  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGAATCTGAAATGTCATATCAAGCTATACTTATTTTTACATTAGC  490

seq1  ATAAATTCCACTATAATATTAAGTGATTTATTTTCAACATTAAGTGATAG  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTCCACTATAATATTAAGTGATTTATTTTCAACATTAAGTGATAG  540

seq1  CTCACTATTGAATATAGATGAAGTTTAACAAAATGTCAGAATCCATTTAA  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTATTGAATATAGATGAAGTTTAACAAAATGTCAGAATCCATTTAA  590

seq1  AGTATTGTTACATGGGATTTCAAATTAAAGTCTATGGTTATATGGAACTC  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTGTTACATGGGATTTCAAATTAAAGTCTATGGTTATATGGAACTC  640

seq1  AACTTCAAAATTCTACAAATGAGAAACTACTAACAATTTTATGATAGTTT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCAAAATTCTACAAATGAGAAACTACTAACAATTTTATGATAGTTT  690

seq1  CAACTCATGGCAGAAAGAGACTGTTGTTTTGGCTTGTGCTTTGGCTTAAT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCATGGCAGAAAGAGACTGTTGTTTTGGCTTGTGCTTTGGCTTAAT  740

seq1  CAACACTGTTTCAGAACAGTCCCTTTAGGTGATACATATCACATGATCAT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACTGTTTCAGAACAGTCCCTTTAGGTGATACATATCACATGATCAT  790

seq1  GTTTGCTTAGCAGTATAGCAAGACTATTATAGTAAGACCATTAGCAAATG  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCTTAGCAGTATAGCAAGACTATTATAGTAAGACCATTAGCAAATG  840

seq1  GTCCTACTATTCTTCATTTTTCATTTGTAGTTTTGCTTTCTTTCTAGAAA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTACTATTCTTCATTTTTCATTTGTAGTTTTGCTTTCTTTCTAGAAA  890

seq1  TATTTGAAGAGCAAGAATATACATCAAATTTCATTTTTTATTCAGTGGTT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGAAGAGCAAGAATATACATCAAATTTCATTTTTTATTCAGTGGTT  940

seq1  TTTGATATAGTCATTACTACTGTCTGATTTTTAGAATGTTTTCATAGGCA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATATAGTCATTACTACTGTCTGATTTTTAGAATGTTTTCATAGGCA  990

seq1  GAACACCCATCTCCATACCTACTAACAAGACTCCTAATTCTTTCTTTCCA  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACCCATCTCCATACCTACTAACAAGACTCCTAATTCTTTCTTTCCA  1040

seq1  TCTGCCCACAACCCCATTTTCGTTATTATACTTTCTGCCTCTACTTTTTT  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCCACAACCCCATTTTCGTTATTATACTTTCTGCCTCTACTTTTTT  1090

seq1  GACTATTGTGATAAATGCCATTCTTTTTTTCCTTATTAGGATAAGATTTA  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATTGTGATAAATGCCATTCTTTTTTTCCTTATTAGGATAAGATTTA  1140

seq1  AAGTTCAATAATAGCATGGTTTGATGTTTTGTTTGAATTAGAATTC  1185
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCAATAATAGCATGGTTTGATGTTTTGTTTGAATTAGAATTC  1186