BAC Information

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BAC

Clone NameB6Ng01-206F04
Chromosome5 (Build37)
Map Location 13,978,824 - 14,098,409
singlet/doubletdoublet
Overlap geneSema3e, LOC100042957
Upstream geneLOC433845, LOC625989, LOC670717, Sema3a, LOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148
Downstream genePclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-206F04.bB6Ng01-206F04.g
ACCGA025769GA025770
length1,2021,191
definitionB6Ng01-206F04.b B6Ng01-206F04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,097,208 - 14,098,409)(13,978,824 - 13,980,042)
sequence
gaattcagaaagattaataaaactgagtacatactcattaatcatatgcc
cccaaatggcacacaagactcgatttgagtttgcctctctgtacaccagt
gatggaatctgcttttcttgagaagcagccaaaatgtcagtttgataaat
gaggtaattcttgcgaatgtacctgctctgttgtttcttatataggttga
tgaatgtatagagaaaaaagaagatgaataatttgctaaaaatataaatg
atgctttgatcacttggatcaaaaagctttggtttgtacaatgacttgat
gaaatagcagcttgtaagagaatccgtgtctctggaaatatcactacatc
gaatgacttagtttgtaagaacagtgtcctaggtcaactgtcactattgt
ctgtttttagcaccactgtgaaggttttgagtaagagatagcaatgtgtt
ttaagtctcctgcaaaactgcttgacataaaattaggtaaatattttact
tatggaactttttctagttacactcttataaaaatatagtgatttgtatc
caagtgtcactcttaaaatatatatatagcatagtgatgtatgttcaagt
atatcttaagctcaataaagcaaataaattaaaaattatattcatgtctc
ttaaacacccctgttattaaaagctactctagataatttgagatagggtt
ttttggttaattcaccacaaactttgaaataaagtaactatgaaaattaa
gctgttataaaatttaaggatgggggaaatccctattattttcaataaag
tcccaggggagtggaatcttatctgtgaactgatttcctcataaggaacc
ctagagaaaagcaacttttctgctttcttttaaacaaaatccaacactta
ctttttcttttatacagtgttacatcttgctatgaactaaactaaattaa
cattgtgcaaaacaactatcctaccaaaagcaattcacagattcactgca
attcctatcaaattcaccacaatatttcttacagaaataaagcaaaggat
cctaaaattcaacatgggaactacaaattatctcagaatagccaaagcaa
ccatagcaacacagaaaaatctggaaagaataaaattccacactcaagat
atactacagaagtagttgggaagatagctgacctagaataagacaggcat
gg

gaattcatttaaattcgaggcttaggttttgtttctctcaatgttcagag
caatgctttaaaatagttaatattcagcccatatacatattagaaatttc
aatttaaaaagctttagcagcaagaactgataaggaagcagtccaattaa
aatgcttaaattgaacacggatttgaaaaattacatgagaatatggagaa
agattttcagagcttgaatgaggtagtatgaatagaaagaagtagaataa
cattaataactttcttaaaatttgcttaccacttttatagtcttctagcc
aagaatgaaaatctaccagttcattttattatctgaaacttgcccagtac
ctttttgtttggattgatccatatgcattttaattaatattctatttctt
tttcttattatcattcagaagaatttagcaaagaacataactccatgtca
ttcatcttagttccccatatattcgtcaaggtggcctcacagtagtagga
acaagaacctcataccagatagctgccatgcttggcatgtggtagataac
gaggggaggacagaatctcatcacgacaccaagtcatttgtacttacaaa
tgtaacttacacagagttttgcgtcacccatgctatttttccaaatagaa
acatttcacatatttgagcaagactgatggatgcagatagtctagttgct
gattttcatagctgatgtttttattattattgctctaactgaggtaaagc
tgtcagttcactttgccataagcaaatctattaaaatcacatgtaatttt
attaacctgttccaacatggttctgaatcttaacaatgattataaccttt
cctacagtaaggctatgggcttctctaacattttaccaatcgcttgaagc
tgtccagatggtacagtaccaattaccccacagcctatattctagatttc
tctataattctagagatgacacagaggaatattgctcttgcggggccata
ggttcttgttctcagcatgcacatggagactcacacatcttctctagtca
ggagcccttcatacttttcatctctctagtgacagcacagttggcacata
ttgcaatcagccatactcataccaagtcatatacttcatttttaattaaa
ggtaccacttccgtgccaggccagggtatggcccaatgcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_14097208_14098409
seq2: B6Ng01-206F04.b_49_1250 (reverse)

seq1  CCATG-CTGTCTTTATTCTAGGGTCAGCCTATCTTTCCAACTAC-TCTGT  48
      ||||| ||||| |||||||| |||||| ||||||| |||||||| |||||
seq2  CCATGCCTGTC-TTATTCTA-GGTCAG-CTATCTTCCCAACTACTTCTGT  47

seq1  AGTATATCTTGAAGTGTGGAATTTTAATCTTTCCAGAATTATCTGTGTTG  98
      ||||||||||| |||||||||||||| |||||||||| || |||||||||
seq2  AGTATATCTTG-AGTGTGGAATTTTATTCTTTCCAGATTTTTCTGTGTTG  96

seq1  CTAATGGTTGCTTTGGCTA-TCTGAGATAATTTGTAGTT-CCATG-TGAA  145
      || |||||||||||||||| ||||||||||||||||||| ||||| ||||
seq2  CT-ATGGTTGCTTTGGCTATTCTGAGATAATTTGTAGTTCCCATGTTGAA  145

seq1  TTTTAGGATCCTTTGCTTTATTTCTGTAAGAAATATTGTGGTGAATTTGA  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGGATCCTTTGCTTTATTTCTGTAAGAAATATTGTGGTGAATTTGA  195

seq1  TAGGAATTGCAGTGAATCTGTGAATTGCTTTTGGTAGGATAGTTGTTTTG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAATTGCAGTGAATCTGTGAATTGCTTTTGGTAGGATAGTTGTTTTG  245

seq1  CACAATGTTAATTTAGTTTAGTTCATAGCAAGATGTAACACTGTATAAAA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATGTTAATTTAGTTTAGTTCATAGCAAGATGTAACACTGTATAAAA  295

seq1  GAAAAAGTAAGTGTTGGATTTTGTTTAAAAGAAAGCAGAAAAGTTGCTTT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGTAAGTGTTGGATTTTGTTTAAAAGAAAGCAGAAAAGTTGCTTT  345

seq1  TCTCTAGGGTTCCTTATGAGGAAATCAGTTCACAGATAAGATTCCACTCC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAGGGTTCCTTATGAGGAAATCAGTTCACAGATAAGATTCCACTCC  395

seq1  CCTGGGACTTTATTGAAAATAATAGGGATTTCCCCCATCCTTAAATTTTA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGACTTTATTGAAAATAATAGGGATTTCCCCCATCCTTAAATTTTA  445

seq1  TAACAGCTTAATTTTCATAGTTACTTTATTTCAAAGTTTGTGGTGAATTA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGCTTAATTTTCATAGTTACTTTATTTCAAAGTTTGTGGTGAATTA  495

seq1  ACCAAAAAACCCTATCTCAAATTATCTAGAGTAGCTTTTAATAACAGGGG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAAAACCCTATCTCAAATTATCTAGAGTAGCTTTTAATAACAGGGG  545

seq1  TGTTTAAGAGACATGAATATAATTTTTAATTTATTTGCTTTATTGAGCTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAAGAGACATGAATATAATTTTTAATTTATTTGCTTTATTGAGCTT  595

seq1  AAGATATACTTGAACATACATCACTATGCTATATATATATTTTAAGAGTG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATATACTTGAACATACATCACTATGCTATATATATATTTTAAGAGTG  645

seq1  ACACTTGGATACAAATCACTATATTTTTATAAGAGTGTAACTAGAAAAAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTGGATACAAATCACTATATTTTTATAAGAGTGTAACTAGAAAAAG  695

seq1  TTCCATAAGTAAAATATTTACCTAATTTTATGTCAAGCAGTTTTGCAGGA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATAAGTAAAATATTTACCTAATTTTATGTCAAGCAGTTTTGCAGGA  745

seq1  GACTTAAAACACATTGCTATCTCTTACTCAAAACCTTCACAGTGGTGCTA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTAAAACACATTGCTATCTCTTACTCAAAACCTTCACAGTGGTGCTA  795

seq1  AAAACAGACAATAGTGACAGTTGACCTAGGACACTGTTCTTACAAACTAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGACAATAGTGACAGTTGACCTAGGACACTGTTCTTACAAACTAA  845

seq1  GTCATTCGATGTAGTGATATTTCCAGAGACACGGATTCTCTTACAAGCTG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTCGATGTAGTGATATTTCCAGAGACACGGATTCTCTTACAAGCTG  895

seq1  CTATTTCATCAAGTCATTGTACAAACCAAAGCTTTTTGATCCAAGTGATC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTCATCAAGTCATTGTACAAACCAAAGCTTTTTGATCCAAGTGATC  945

seq1  AAAGCATCATTTATATTTTTAGCAAATTATTCATCTTCTTTTTTCTCTAT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATCATTTATATTTTTAGCAAATTATTCATCTTCTTTTTTCTCTAT  995

seq1  ACATTCATCAACCTATATAAGAAACAACAGAGCAGGTACATTCGCAAGAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCATCAACCTATATAAGAAACAACAGAGCAGGTACATTCGCAAGAA  1045

seq1  TTACCTCATTTATCAAACTGACATTTTGGCTGCTTCTCAAGAAAAGCAGA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTCATTTATCAAACTGACATTTTGGCTGCTTCTCAAGAAAAGCAGA  1095

seq1  TTCCATCACTGGTGTACAGAGAGGCAAACTCAAATCGAGTCTTGTGTGCC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATCACTGGTGTACAGAGAGGCAAACTCAAATCGAGTCTTGTGTGCC  1145

seq1  ATTTGGGGGCATATGATTAATGAGTATGTACTCAGTTTTATTAATCTTTC  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGGGGCATATGATTAATGAGTATGTACTCAGTTTTATTAATCTTTC  1195

seq1  TGAATTC  1202
      |||||||
seq2  TGAATTC  1202


seq1: chr5_13978824_13980042
seq2: B6Ng01-206F04.g_66_1256

seq1  GAATTCATTTAAATTCGAGGCTTAGGTTTTGTTTCTCTCAATGTTCAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTAAATTCGAGGCTTAGGTTTTGTTTCTCTCAATGTTCAGAG  50

seq1  CAATGCTTTAAAATAGTTAATATTCAGCCCATATACATATTAGAAATTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCTTTAAAATAGTTAATATTCAGCCCATATACATATTAGAAATTTC  100

seq1  AATTTAAAAAGCTTTAGCAGCAAGAACTGATAAGGAAGCAGTCCAATTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAAAAGCTTTAGCAGCAAGAACTGATAAGGAAGCAGTCCAATTAA  150

seq1  AATGCTTAAATTGAACACGGATTTGAAAAATTACATGAGAATATGGAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTTAAATTGAACACGGATTTGAAAAATTACATGAGAATATGGAGAA  200

seq1  AGATTTTCAGAGCTTGAATGAGGTAGTATGAATAGAAAGAAGTAGAATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTCAGAGCTTGAATGAGGTAGTATGAATAGAAAGAAGTAGAATAA  250

seq1  CATTAATAACTTTCTTAAAATTTGCTTACCACTTTTATAGTCTTCTAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAATAACTTTCTTAAAATTTGCTTACCACTTTTATAGTCTTCTAGCC  300

seq1  AAGAATGAAAATCTACCAGTTCATTTTATTATCTGAAACTTGCCCAGTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGAAAATCTACCAGTTCATTTTATTATCTGAAACTTGCCCAGTAC  350

seq1  CTTTTTGTTTGGATTGATCCATATGCATTTTAATTAATATTCTATTTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGTTTGGATTGATCCATATGCATTTTAATTAATATTCTATTTCTT  400

seq1  TTTCTTATTATCATTCAGAAGAATTTAGCAAAGAACATAACTCCATGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTATTATCATTCAGAAGAATTTAGCAAAGAACATAACTCCATGTCA  450

seq1  TTCATCTTAGTTCCCCATATATTCGTCAAGGTGGCCTCACAGTAGTAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCTTAGTTCCCCATATATTCGTCAAGGTGGCCTCACAGTAGTAGGA  500

seq1  ACAAGAACCTCATACCAGATAGCTGCCATGCTTGGCATGTGGTAGATAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAACCTCATACCAGATAGCTGCCATGCTTGGCATGTGGTAGATAAC  550

seq1  GAGGGGAGGACAGAATCTCATCACGACACCAAGTCATTTGTACTTACAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGAGGACAGAATCTCATCACGACACCAAGTCATTTGTACTTACAAA  600

seq1  TGTAACTTACACAGAGTTTTGCGTCACCCATGCTATTTTTCCAAATAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACTTACACAGAGTTTTGCGTCACCCATGCTATTTTTCCAAATAGAA  650

seq1  ACATTTCACATATTTGAGCAAGACTGATGGATGCAGATAGTCTAGTTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCACATATTTGAGCAAGACTGATGGATGCAGATAGTCTAGTTGCT  700

seq1  GATTTTCATAGCTGATGTTTTTATTATTATTGCTCTAACTGAGGTAAAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTCATAGCTGATGTTTTTATTATTATTGCTCTAACTGAGGTAAAGC  750

seq1  TGTCAGTTCACTTTGCCATAAGCAAATCTATTAAAATCACATGTAATTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGTTCACTTTGCCATAAGCAAATCTATTAAAATCACATGTAATTTT  800

seq1  ATTAACCTGTTCCAACATGGTTCTGAATCTTAACAATGATTATAACCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACCTGTTCCAACATGGTTCTGAATCTTAACAATGATTATAACCTTT  850

seq1  CCTACAGTAAGGCTATGGGCTTCTCTAACATTTTACCAATCGCTTGAAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACAGTAAGGCTATGGGCTTCTCTAACATTTTACCAATCGCTTGAAGC  900

seq1  TGTCCAGATGGTACAGTACCAATTACCCCACAGCCTATAATTCTAGATTT  950
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGTCCAGATGGTACAGTACCAATTACCCCACAGCCTAT-ATTCTAGATTT  949

seq1  CTCTATAATTCTAGAGATGACACAGAGGAATAATTGCTCTTGCGGGGGCC  1000
      ||||||||||||||||||||||||||||||| ||||||||||| ||||||
seq2  CTCTATAATTCTAGAGATGACACAGAGGAAT-ATTGCTCTTGC-GGGGCC  997

seq1  ATAGGTTC-TGTTCTCAGCATGCACATGGAGACTCACAACCAATCTTCCT  1049
      |||||||| |||||||||||||||||||||||||||||    ||||| ||
seq2  ATAGGTTCTTGTTCTCAGCATGCACATGGAGACTCACA---CATCTT-CT  1043

seq1  CTAGTTCCAGGGAGCCCTTCAATACCTTTTCATCTCTCTAGTGACCAGGC  1099
      |||||  || |||||||||| ||| ||||||||||||||||||| |||  
seq2  CTAGT--CA-GGAGCCCTTC-ATA-CTTTTCATCTCTCTAGTGA-CAG--  1085

seq1  CCACAGTTGGGCACATAAATGCAATCAAGCAAAATACTCATACACAAAGT  1149
       ||||||| ||||||| | ||||||||  |   ||||||||  || ||||
seq2  -CACAGTT-GGCACAT-ATTGCAATCAGCC---ATACTCAT--ACCAAGT  1127

seq1  CAAATAAATACATTCATTTTTTTTTAAATTAAAATGTACCACT--CCTGC  1197
      || |||      |||||||||     |||| ||| ||||||||  | |||
seq2  CATATA-----CTTCATTTTT-----AATT-AAAGGTACCACTTCCGTGC  1166

seq1  CAGG-CAGTG-ATGGCCC-ATGCCT  1219
      |||| ||| | ||||||| ||||||
seq2  CAGGCCAGGGTATGGCCCAATGCCT  1191


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