BAC Information

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BAC

Clone NameB6Ng01-206F16
Chromosome5 (Build37)
Map Location 18,471,524 - 18,472,659
singlet/doubletsinglet
Overlap genenone
Upstream geneGnat3, Gnai1, LOC100041818, LOC668167
Downstream gene4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-206F16.bB6Ng01-206F16.g
ACCGA025791GA025792
length6261,139
definitionB6Ng01-206F16.b B6Ng01-206F16.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcccatgtaattctggggacttaattaacataagtaacattagacc
aaatccacaattccccatagttttgtgcaaccactgtacctgttcaaaag
tctaaagttcaaggtttcttttctttccctttctttctttctttctttct
ttctttctttctttctttctttctttctttctttctttctttctttcttt
cttccttccttccttccttccttcctttctttctttctttctttaaatta
ggtattttctttatttacatttcaaatgctatcccaaaagtcccccatac
cctactgcccccactcctctacccacccactcctacttcttggacctggc
gttcccctgtactgaggcatataaagtttgcaagactaaggggcctctct
tcccaatgatggctgactaggctatcttctgatacttattcagctagaga
cacaagctctgggggtactggtcagttcatattattgttccacctatagg
attgcagacccctttagctccttgggtactttctctagctcctgcattgg
ggccctgtgttccatccatagatgactgtgagcatccacttctgtgttgc
agctccgcatagctcacagagacagc

gaattcactttgctttctcagtcataatataaggagtttttgcttgcttg
cttgcttgctttcctttattttgttttgctgcaagtcatcttgcaataaa
cttgtatatttctgaatattcccagaactgcataatgtgtgctctaaagt
aatgttgattggttagttatagtagctaatattctcttgtattgaaatcc
aattcgggatgtaaagaagagtgtctgtcctacaaagctttgcaagttca
aaatattttgttctctacaatgtcattgcctcctctttctgtgtgcacag
agaaaggaactatagctatgaatgacatgagtttagaagaatgaactagc
tgtaaaaagagatttctatatcaaattctagcagctcacagtatcaacca
gattaaattcaggagtggccattcattactgattcagcttcatgggcagt
tcactggcatttaatttgtttttatattcttattcttattcctttttttt
aactctattttaaagttggatattttctttatttacagttcaaatgctat
cccctttccagatccccaccctgagaaaccccctatcccacccatcagct
aacatggtaacatgcatattaaacattgcattcactgtagtgctcaatac
atgtaatatgtattctaggatatatattataagctattccctgtaggttt
gcatatgctgggacttaacacaaggtgaaatattccatctacatgctttt
agaactcatccctttcattaactgacatactataattttaattggctctt
caaatttggtatcaaattctgacttaaccagctttgtcctccaaacatag
catggtgtgggaagccacatgtgccattgcaagggtggcgctggctactg
ttggccaccacgcatacataggcagtaaagtttttttgccaagatgaggt
tttgagaattaaccaatcagatgagagacagttaaccaatcagatggaga
gaggagttaacccaatcagatgagagacatgttaccaacccagatgtgag
aacatgcataaccaatccgggtgtgagacacgccttctaggcctatataa
gccagcacccagtctaaggcctggggtctctttggctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_18471524_18472659
seq2: B6Ng01-206F16.g_71_1209

seq1  GAATTCACTTTGCTTTCTCAGTCATAATATAAGGAGTTTTTGCTTGCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTGCTTTCTCAGTCATAATATAAGGAGTTTTTGCTTGCTTG  50

seq1  CTTGCTTGCTTTCCTTTATTTTGTTTTGCTGCAAGTCATCTTGCAATAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTGCTTTCCTTTATTTTGTTTTGCTGCAAGTCATCTTGCAATAAA  100

seq1  CTTGTATATTTCTGAATATTCCCAGAACTGCATAATGTGTGCTCTAAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTATATTTCTGAATATTCCCAGAACTGCATAATGTGTGCTCTAAAGT  150

seq1  AATGTTGATTGGTTAGTTATAGTAGCTAATATTCTCTTGTATTGAAATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTGATTGGTTAGTTATAGTAGCTAATATTCTCTTGTATTGAAATCC  200

seq1  AATTCGGGATGTAAAGAAGAGTGTCTGTCCTACAAAGCTTTGCAAGTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCGGGATGTAAAGAAGAGTGTCTGTCCTACAAAGCTTTGCAAGTTCA  250

seq1  AAATATTTTGTTCTCTACAATGTCATTGCCTCCTCTTTCTGTGTGCACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTTGTTCTCTACAATGTCATTGCCTCCTCTTTCTGTGTGCACAG  300

seq1  AGAAAGGAACTATAGCTATGAATGACATGAGTTTAGAAGAATGAACTAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGAACTATAGCTATGAATGACATGAGTTTAGAAGAATGAACTAGC  350

seq1  TGTAAAAAGAGATTTCTATATCAAATTCTAGCAGCTCACAGTATCAACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAAAGAGATTTCTATATCAAATTCTAGCAGCTCACAGTATCAACCA  400

seq1  GATTAAATTCAGGAGTGGCCATTCATTACTGATTCAGCTTCATGGGCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAATTCAGGAGTGGCCATTCATTACTGATTCAGCTTCATGGGCAGT  450

seq1  TCACTGGCATTTAATTTGTTTTTATATTCTTATTCTTATTCCTTTTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGGCATTTAATTTGTTTTTATATTCTTATTCTTATTCCTTTTTTTT  500

seq1  AACTCTATTTTAAAGTTGGATATTTTCTTTATTTACAGTTCAAATGCTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTATTTTAAAGTTGGATATTTTCTTTATTTACAGTTCAAATGCTAT  550

seq1  CCCCTTTCCAGATCCCCACCCTGAGAAACCCCCTATCCCACCCATCAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTTCCAGATCCCCACCCTGAGAAACCCCCTATCCCACCCATCAGCT  600

seq1  AACATGGTAACATGCATATTAAACATTGCATTCACTGTAGTGCTCAATAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGGTAACATGCATATTAAACATTGCATTCACTGTAGTGCTCAATAC  650

seq1  ATGTAATATGTATTCTAGGATATATATTATAAGCTATTCCCTGTAGGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAATATGTATTCTAGGATATATATTATAAGCTATTCCCTGTAGGTTT  700

seq1  GCATATGCTGGGACTTAACACAAGGTGAAATATTCCATCTACATGCTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATGCTGGGACTTAACACAAGGTGAAATATTCCATCTACATGCTTTT  750

seq1  AGAACTCATCCCTTTCATTAACTGACATACTATAATTTTAATTGGCTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTCATCCCTTTCATTAACTGACATACTATAATTTTAATTGGCTCTT  800

seq1  CAAATTTGGTATCAAATTCTGACTTAACCAGCTTTGTCCTCCAAACATAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTGGTATCAAATTCTGACTTAACCAGCTTTGTCCTCCAAACATAG  850

seq1  CATGGTGTGGGAAGCCACATGTGCCATTGC-AGGGTGGCGCTGGCTACTG  899
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CATGGTGTGGGAAGCCACATGTGCCATTGCAAGGGTGGCGCTGGCTACTG  900

seq1  TTGGCCACCACGCATACATAGGCAGTAAAGTTTTTTTGCCAAGATGAGGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCACCACGCATACATAGGCAGTAAAGTTTTTTTGCCAAGATGAGGT  950

seq1  TTTGAGAATTAACCAATCAGATGAGAGACAAGTTAACCAATCAGAT-GAG  998
      ||||||||||||||||||||||||||||| |||||||||||||||| |||
seq2  TTTGAGAATTAACCAATCAGATGAGAGAC-AGTTAACCAATCAGATGGAG  999

seq1  AGAGGAGTTAA-CCAATCAGATGAGAGACATGTTAACCAACCAGATGTGA  1047
      ||||||||||| ||||||||||||||||||||||| | | ||||||||||
seq2  AGAGGAGTTAACCCAATCAGATGAGAGACATGTTACCAACCCAGATGTGA  1049

seq1  G-ACATGCATAACCAATCCGGGTGTGAGACACGCCTTTCCTAGGCCTATA  1096
      | |||||||||||||||||||||||||||||||||||  |||||||||||
seq2  GAACATGCATAACCAATCCGGGTGTGAGACACGCCTT--CTAGGCCTATA  1097

seq1  TAAG-CAGCA-CCAGTTCTAGGCTTGGGGTCTCTTTGCCTCT  1136
      |||| ||||| |||||   |||| ||||||||||||| ||||
seq2  TAAGCCAGCACCCAGTCTAAGGCCTGGGGTCTCTTTGGCTCT  1139


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