MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-206I08
Chromosome	5 (Build37)
Map Location	105,950,555 - 106,004,300
singlet/doublet	doublet
Overlap gene	Lrrc8c
Upstream gene	LOC100042165, LOC100041172, D930016D06Rik, 2310012P17Rik, LOC640963, LOC100041199, LOC666726, C230055K05Rik, LOC100041216, Abcg3, LOC626471, EG545790, 5830443L24Rik, BC057170, Gbp4, LOC675363, LOC626578, Mpa2l, EG634650, Lrrc8b
Downstream gene	Lrrc8d, LOC100042335, D830014E11Rik, LOC100042349, Zfp326, LOC626723, LOC546882, LOC671295, 4930458A03Rik, Barhl2, EG666892
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC100042165 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042165
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 72 ESTs, 6 Proteins

name	LOC100041172 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041172
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs

name	D930016D06Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:100662 MGI:2442700
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs

name	2310012P17Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69623 MGI:1916873
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs

name	LOC640963 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:640963
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 20 ESTs pseudo : _no_value

name	LOC100041199 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041199
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	LOC666726 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666726
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 54 ESTs, 10 Proteins pseudo : _no_value

name	C230055K05Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:626391 MGI:2441896
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100041216 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041216
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	Abcg3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:27405 MGI:1351624
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC626471 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:626471
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 27 Proteins pseudo : _no_value

name	EG545790 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:545790 MGI:3644057
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 55 ESTs, 2 Proteins

name	5830443L24Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76074 MGI:1923324
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	BC057170 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:236573 MGI:3605620
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gbp4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17472 MGI:97072
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC675363 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:675363
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 8 Proteins pseudo : _no_value

name	LOC626578 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:626578
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mpa2l (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:100702 MGI:2140937
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG634650 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:634650 MGI:3646307
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Lrrc8b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:433926 MGI:2141353
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Lrrc8c (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:100604 MGI:2140839
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Lrrc8d (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:231549 MGI:1922368
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042335 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042335
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 mRNAs, 869 ESTs, 7 Proteins

name	D830014E11Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:320751 MGI:2444658
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042349 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042349
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 129 mRNAs, 4097 ESTs, 22 Proteins

name	Zfp326 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:54367 MGI:1927246
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC626723 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:626723
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs, 3 Proteins pseudo : _no_value

name	LOC546882 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:546882
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs, 17 Proteins pseudo : _no_value

name	LOC671295 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:671295
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 Proteins pseudo : _no_value

name	4930458A03Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:330146 MGI:2685681
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs

name	Barhl2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:104382 MGI:1859314
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG666892 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:666892 MGI:3646046
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042165 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149254138 GeneID:100042165
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 72 ESTs, 6 Proteins product : similar to THO complex 2 transcript_id : XM_001478280.1

name	LOC100041172 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149254071 GeneID:100041172
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs product : hypothetical protein LOC100041172 transcript_id : XM_001475917.1

name	D930016D06Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149254140 GeneID:100662 MGI:2442700
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs product : RIKEN cDNA D930016D06 gene transcript_id : XM_001478291.1

name	2310012P17Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149254079 GeneID:69623 MGI:1916873
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs product : RIKEN cDNA 2310012P17 gene transcript_id : XM_001487796.1

name	C230055K05Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133778966 GeneID:626391 MGI:2441896
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA C230055K05 gene transcript_id : NM_001039231.2

name	Abcg3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:66932958 GeneID:27405 MGI:1351624
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ATP-binding cassette, sub-family G (WHITE), member 3 transcript_id : NM_030239.2

name	EG545790 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149254143 GeneID:545790 MGI:3644057
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 55 ESTs, 2 Proteins product : predicted gene, EG545790 transcript_id : XM_620236.4

name	5830443L24Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:115292436 GeneID:76074 MGI:1923324
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 5830443L24 gene transcript_id : NM_029509.4

name	BC057170 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118129953 GeneID:236573 MGI:3605620
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cDNA sequence BC057170 transcript_id : NM_172777.2

name	Gbp4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:126157520 GeneID:17472 MGI:97072
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : guanylate nucleotide binding protein 4 transcript_id : NM_008620.3

name	LOC626578 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:116812913 GeneID:626578
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : macrophage activation 2 like LOC626578 transcript_id : NM_001039646.2

name	Mpa2l (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34996502 GeneID:100702 MGI:2140937
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : macrophage activation 2 like transcript_id : NM_194336.1

name	EG634650 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:88900482 GeneID:634650 MGI:3646307
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, EG634650 transcript_id : NM_001039647.1

name	Lrrc8b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:144446106 GeneID:433926 MGI:2141353
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : leucine rich repeat containing 8 family, member B transcript_id : NM_001033550.2

name	Lrrc8c (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118129793 GeneID:100604 MGI:2140839
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : leucine rich repeat containing 8 family, member C transcript_id : NM_133897.2

name	Lrrc8d (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31982310 GeneID:231549 MGI:1922368
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : leucine rich repeat containing 8D transcript_id : NM_178701.2

name	LOC100042335 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149254144 GeneID:100042335
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 mRNAs, 869 ESTs, 7 Proteins product : similar to hCG1994130 transcript_id : XM_001478495.1

name	D830014E11Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142371498 GeneID:320751 MGI:2444658
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA D830014E11 gene transcript_id : NM_177251.3

name	LOC100042349 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149254146 GeneID:100042349
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 129 mRNAs, 4097 ESTs, 22 Proteins product : similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) transcript_id : XM_001478544.1

name	Zfp326 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:9055385 GeneID:54367 MGI:1927246
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger protein 326 transcript_id : NM_018759.1

name	4930458A03Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94375062 GeneID:330146 MGI:2685681
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs product : RIKEN cDNA 4930458A03 gene transcript_id : XM_287481.4

name	Barhl2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:56699435 GeneID:104382 MGI:1859314
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : BarH-like 2 (Drosophila) transcript_id : NM_001005477.1

name	EG666892 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94375063 GeneID:666892 MGI:3646046
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, EG666892 transcript_id : XM_986833.1

name	LOC100042165 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149254139 GeneID:100042165
definition	codon_start : 1 product : similar to THO complex 2 protein_id : XP_001478330.1

name	LOC100041172 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149254072 GeneID:100041172
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001475967.1

name	D930016D06Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149254141 GeneID:100662 MGI:2442700
definition	codon_start : 1 product : hypothetical protein LOC100662 protein_id : XP_001478341.1

name	2310012P17Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149254080 GeneID:69623 MGI:1916873
definition	codon_start : 1 product : similar to CDNA sequence BC002059 protein_id : XP_001487846.1

name	C230055K05Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:133778967 GeneID:626391 MGI:2441896
definition	codon_start : 1 product : similar to Zinc finger protein 124 (HZF-16) protein_id : NP_001034320.2

name	Abcg3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:66932959 CCDS:CCDS19488.1 GeneID:27405 MGI:1351624
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATPase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0006810 - transport [Evidence IEA] codon_start : 1 product : ATP-binding cassette, subfamily G, member 3 protein_id : NP_084515.2

name	EG545790 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:63530558 GeneID:545790 MGI:3644057
definition	codon_start : 1 product : similar to protein translocation complex beta subunit protein_id : XP_620236.1

name	5830443L24Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:83776551 CCDS:CCDS19490.1 GeneID:76074 MGI:1923324
definition	codon_start : 1 product : guanylate binding protein 8 protein_id : NP_083785.3

name	BC057170 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27370144 GeneID:236573 MGI:3605620
definition	GO_function : GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA] GO_process : GO:0006955 - immune response [Evidence IEA] codon_start : 1 product : guanylate binding protein family, member 6 protein_id : NP_766365.1

name	Gbp4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:126157521 GeneID:17472 MGI:97072
definition	codon_start : 1 note : guanylate-binding protein 4 homolog product : macrophage activation 2 protein_id : NP_032646.2

name	LOC626578 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:116812914 GeneID:626578
definition	codon_start : 1 product : hypothetical protein LOC626578 protein_id : NP_001034735.2

name	Mpa2l (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34996503 CCDS:CCDS19492.1 GeneID:100702 MGI:2140937
definition	GO_function : GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA] GO_process : GO:0006955 - immune response [Evidence IEA] codon_start : 1 exception : mismatches in translation product : macrophage activation 2 like protein_id : NP_919317.1

name	EG634650 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:88900483 GeneID:634650 MGI:3646307
definition	GO_function : GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA] GO_process : GO:0006955 - immune response [Evidence IEA] codon_start : 1 exception : unclassified translation discrepancy product : hypothetical protein LOC634650 protein_id : NP_001034736.1

name	Lrrc8b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:75677565 GeneID:433926 MGI:2141353
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 note : T-cell activation leucine repeat-rich protein product : leucine rich repeat containing 8 family, member B protein_id : NP_001028722.1

name	Lrrc8c (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19923058 CCDS:CCDS19493.1 GeneID:100604 MGI:2140839
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 note : factor for adipocyte differentiation 158 product : AD158 protein_id : NP_598658.1

name	LOC100042335 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149254145 GeneID:100042335
definition	codon_start : 1 product : similar to hCG1994130 protein_id : XP_001478545.1

name	Lrrc8d (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31982311 CCDS:CCDS19494.1 GeneID:231549 MGI:1922368
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 exception : mismatches in translation note : leucine-rich repeat-containing 5 product : leucine rich repeat containing 5 protein_id : NP_848816.2

name	D830014E11Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28893313 GeneID:320751 MGI:2444658
definition	codon_start : 1 product : hypothetical protein LOC320751 protein_id : NP_796225.1

name	LOC100042349 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149254147 GeneID:100042349
definition	codon_start : 1 product : similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) protein_id : XP_001478594.1

name	Zfp326 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9055386 CCDS:CCDS19496.1 GeneID:54367 MGI:1927246
definition	GO_component : GO:0005626 - insoluble fraction [Evidence IDA]; GO:0005622 - intracellular [Evidence IEA]; GO:0016363 - nuclear matrix [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0016563 - transcriptional activator activity [Evidence IDA]; GO:0008270 - zinc ion binding [Evidence IDA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation product : zinc finger protein 326 protein_id : NP_061229.1

name	4930458A03Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28519035 GeneID:330146 MGI:2685681
definition	codon_start : 1 product : hypothetical protein protein_id : XP_287481.1

name	Barhl2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:56699436 CCDS:CCDS19497.1 GeneID:104382 MGI:1859314
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0045165 - cell fate commitment [Evidence IDA]; GO:0001709 - cell fate determination [Evidence IMP]; GO:0030182 - neuron differentiation [Evidence IDA] [Evidence IMP]; GO:0001764 - neuron migration [Evidence IMP]; GO:0045727 - positive regulation of protein biosynthesis [Evidence IMP]; GO:0030516 - regulation of axon extension [Evidence IMP] codon_start : 1 note : BarH-like 2 homeobox protein; BarH-class homeodomain transcription factor product : BarH-like 2 protein_id : NP_001005477.1

name	EG666892 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94375064 GeneID:666892 MGI:3646046
definition	codon_start : 1 product : hypothetical protein protein_id : XP_991927.1

name	LOC100041199 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041199
definition	number : 1 pseudo : _no_value

name	LOC100041216 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041216
definition	number : 4 pseudo : _no_value

name	LOC100041216 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041216
definition	number : 3 pseudo : _no_value

name	LOC100041216 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041216
definition	number : 2 pseudo : _no_value

name	LOC100041216 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041216
definition	number : 1 pseudo : _no_value

name	LOC626471 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:626471
definition	number : 2 pseudo : _no_value

name	LOC626471 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:626471
definition	number : 1 pseudo : _no_value

name	LOC671295 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:671295
definition	number : 1 pseudo : _no_value

name	LOC671295 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:671295
definition	number : 2 pseudo : _no_value

name	LOC640963 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149254142 GeneID:640963
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 20 ESTs product : similar to STAT3-interacting protein as a repressor pseudo : _no_value transcript_id : XR_033637.1

name	LOC666726 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149254081 GeneID:666726
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 54 ESTs, 10 Proteins product : similar to 4932441K18Rik protein pseudo : _no_value transcript_id : XR_032503.1

name	LOC675363 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149254090 GeneID:675363
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 8 Proteins product : similar to CDNA sequence BC057170 pseudo : _no_value transcript_id : XR_032536.1

name	LOC626723 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149254101 GeneID:626723
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs, 3 Proteins product : similar to ribosomal protein L15 pseudo : _no_value transcript_id : XR_032604.1

name	LOC546882 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149254102 GeneID:546882
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs, 17 Proteins product : similar to L-lactate dehydrogenase A chain (LDH-A) (LDH muscle subunit) (LDH-M) pseudo : _no_value transcript_id : XR_032614.1

clone name	MSMg01-372C09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-372C13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-515E18
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-204E02
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-270L06
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-368L20
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-434P16
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-157O22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-316N01
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-106F17
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-491O17
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-157O22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-290O02
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-531K01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-474P05
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-542A22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-477B04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-066N21
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-064L02
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-515I15
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-491O17
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-089M16
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-496G12
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-303I04
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-290O02
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-055N21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-362E07
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-066H01
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-235O16
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-480M22
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-455A14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-493K03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-307K09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-164N08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-436K19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-261F06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-263M23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-193P08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-339I11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-347E15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-233A16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-305G19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-442P03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-171B23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-114L13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-453E22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-207P16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-547C06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-523H19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-143K05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-146F20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-296O24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-469M13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-405J19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-411P09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-429M06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-537D04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-540J09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-410E14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-507H06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-196H17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-128K12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-455E22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-149E03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-132F16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-098K03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-101F06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-333E04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-513A13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-144J09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-387F13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-374A11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-414L23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-415M20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-318A02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-291I14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-126J04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-144P05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-544A20
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-544E22
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-099K04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-388D20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-311C16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-349J09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-328N09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-479B03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-090I15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-294H23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-390A17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-433P19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292H11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-146A09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320D23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216I22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-286B23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-121O13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-154B01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-095J23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-322E14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-236J09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-140P01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-331D22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-115K23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-029K22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-159B01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-133H21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-065P23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-149J22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-177E23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-078N13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-245P03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-011A06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-346F03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-290E05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-041J14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-315E13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-196L21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-028H22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-344C15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-269O24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-108A11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-048M06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-247J04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-070N08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-103P22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-230I13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-166C24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-145K13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-350J15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-012D09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-276M22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-139O21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-284L20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-039L20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-170I18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-285C16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-015G08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-094B03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-106H22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-008E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-057F14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-061G12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-169C15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-206I08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-038K05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-241O04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-246B17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-128F01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-297M14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-019H01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226C07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-330L17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-271K20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-078E10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-241G21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-062O01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-046C20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262A06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-265N12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-343L11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-219M24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-336A24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-076L11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-072J20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-077C14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-210G23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-267K04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-172B16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-306P20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-062D04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-238G06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-182L16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-059G22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-085D02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-282E05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-266E05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-193C08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-029J13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-311H12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-336O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-074P07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-348F22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122L18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-180I18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-243N17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-142O22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-164G16
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-206I08.b	B6Ng01-206I08.g
ACC	GA025915	GA025916
length	1,133	1,035
definition	B6Ng01-206I08.b	B6Ng01-206I08.g
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(105,950,555 - 105,951,690)	(106,003,472 - 106,004,300)
sequence	gaattctaacagaaatgaacaacttgaactcttatgtaaagtttattttt taaagaacaattcagagtcagaaatattttaatttccaaatacccagttt ttatcaaattattatgtttaattgatcgattgattgattgattgattgat tgattgattgagacagggaactggctgtcttggaacttgctctgtaagac caggctagcctcaaactcagaggtctgtctgcttctgcctccaaagtgct gagattaaaggagtgcaccaccactgattgccagtgacttttaaatcttc tgtagtactttaatccatagtcattggcaccatggtaataaagcccaagt ttaaagagaaatgaaataaaagttatacttatttagcaagacttgtctta atgatttgaaaacatttctgttacgttaactgtctggcctggtgtctctc ccatcctaagagggatggttccatacccattttatagaatggggctcaga gtttatgacttggcaatgccatgcagatggaatatcctgagtggatgcag tcgggcaccatactgcttgcccttgtttgtttaggcacagtcttgctttg ccacccagtcttaacctcacagtcctgacaatcttcctgcctcagcctct tgagtgatagaagtacacatgtgagttcaccacatctggttctctttagt tctcaatgttaccccttgtcccattatccaaaggctccccccaccaccta aaactaaccataacacctgcacaagaaaacagaaattaagagcataaagt aacctctccagagtttgccacgccctggttgatctgcaacagagtttgaa ttttgagtaaggacagtctgtttccaaagctggtgttcttttgactgatt gcaactaaatgaataatttgaaacgacccagaggaccactgtgtcctctc ccatcagctgctcttggcaactgtatctcatggactatacattcccagga tttttctccctcatcccagaaatgttggctgtgtctctcatcttggttca tctgtgaacatatattacaactatgagtgacgttactatgcaggtgtcgt ggaggtgtctttgactcatttctttcaatataa	gaattctatcgaagttagctttacaaccacactgtgtttcataggatggt gacctgggaccttgctttgctattctgccaatcttctgtgaaaggtttcc cttgtgaggctggagaaaatggctcagcagtcgagagcagagctgatctt ccagaggacgattcccagcacccacagggaagcttccaactgtgacttcg attcccagggatctgatgctgccttctggcctcccgggggactgcacaca tgtggagcacatacatacttgcaggcagataaaagacccgtaccacacaa taagcaagaatctgccattatacagagggcacaatgctaatttttgagtg ttttcgaggtctagaaagctccttgagggatatgcatgtgtacctaaagg agcaaagttgagaagggaacagggctagatgcaactgtgaagttcatggg aaccttatggttgggtaaggcccagaggaaacccaccaaggtgattgaaa aattctgtggcagccaatattaaagagtgagcaaacactttttgtgtggg tgggaaaggattctcccttaagccacagggttgttgactgaggatcccag tgctcggactgagttattttcctaagagttgttggccaatgagaccccag aggctcccaagggataaaggccacccacactgccaacagtgccgttggtc acatgccataactggaccttattgctatagatagacgtgtcatgcttcgg gtgcaagcttggagaaatccagctggactgaaccctcccttgaggttaac ttttatcgtaccaggatgtgctcctgaggtgtctggggaaataatggctc aaagcactagtcagctgggtacttataggcattgaaggctatcagagagg cacacaaacatacccacccaaaggagcaaggttggaagccacctcagaca gcaagaggacacagggcccagtgctggttagtgcaacactgggttccttt ctttcttcctttcctttcctatctatacataagta
quality values	Open. Hide. 58 47 30 39 62 62 62 56 62 39 30 62 62 62 51 38 47 62 62 47 51 62 62 62 62 62 59 62 62 62 62 46 43 38 33 37 59 50 43 33 59 62 62 62 62 59 62 62 62 62 54 62 62 59 54 62 62 62 62 62 62 62 59 59 62 62 62 62 62 59 62 62 62 62 62 62 54 62 62 59 54 42 62 62 62 62 59 59 62 62 62 62 62 62 59 59 62 62 49 49 54 59 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 54 42 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 59 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 54 62 62 62 62 59 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 54 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 58 58 58 58 58 58 58 58 58 58 54 58 58 58 58 58 41 58 58 58 58 58 58 58 58 58 58 54 45 58 54 58 58 58 58 58 58 58 58 58 54 58 58 58 58 58 54 58 58 49 58 58 47 46 58 58 58 53 58 53 58 58 58 58 58 58 58 58 58 58 58 58 49 46 53 58 58 53 58 58 58 51 58 49 58 50 58 58 51 51 51 53 58 58 58 58 58 58 49 49 54 58 58 51 49 58 50 58 58 58 54 58 51 53 50 52 58 58 58 53 58 58 51 58 39 58 58 51 50 48 42 58 58 41 48 39 51 52 58 50 58 58 53 58 58 46 58 49 50 52 36 39 41 58 44 58 54 51 58 58 27 58 51 53 53 58 58 52 53 40 51 58 51 58 50 58 35 47 58 30 47 41 51 58 58 58 52 41 47 36 40 54 52 33 54 52 45 52 45 51 30 54 49 41 54 40 53 45 54 54 54 54 54 39 35 40 35 41 54 45 53 54 54 51 40 45 52 52 49 41 33 45 45 44 40 38 53 54 43 53 45 32 52 37 51 42 54 54 54 47 35 33 40 54 54 32 46 41 32 54 30 51 16 38 37 52 45 54 51 42 39 33 33 33 32 39 39 41 24 24 22 28 53 16 32 51 41 27 21 41 30 45 45 36 33 33 26 31 33 30 28 33 45 28 30 35 34 28 16 45 45 31 32 51 22 38 51 33 30 41 22 29 51 51 33 29 45 29 31 31 18 24 18 25 28 39 36 33 35 31 33 16 51 18 23 31 37 48 30 25 31 38 41 46 21 20 36 8 25 31 48 48 38 32 31 20 31 33 31 33 29 36 31 30 29 36 36 27 48 31 32 38 26 33 27 20 31 19 47 23 17 28 46 27 26 19 33 14 33 23 21 9 41 32 21 31 23 9 17 25 17 25 29 37 31 30 19 21 30 31 29 44 31 23 29 20 12 20 32 22 22 17 31 19 13 32 21 27 18 26 25 25 24 34 22 19 25 27 20 21 33 21 26 25 7 16 26 19 16 17 20 22 35 20 22 48 31 22 20 15 11 8 31 48 36 9 20 32 28 43 19 29 31 21 21 20 24 24 28 22 37 48 29 10 17 19 21 22 21 25 21 20 20 32 27 22 14 15 14 18 21 19 27 14 28 13 18 8 11 25 16 16 24 18 12 13 12 27 13 17 7 7 4 4 4 6 20 12 8 6 8 7 13 24 7 10 5 5 3 5 21 12 24 11 15 10 9 6 6 7 8 15 7 21 5 6 8 16 11 6 7 13 4 7 7 24 5 3 1 3 11 26 18 16 17 5 15 22 11 16 25 16 6 4 25 21 7 5 3 3 5 6 17 23	Open. Hide. 62 49 44 47 62 62 62 62 62 62 56 51 51 23 28 34 20 23 23 43 56 59 62 62 51 59 62 59 59 59 62 62 62 54 42 54 62 62 62 59 49 62 59 62 62 59 59 62 62 62 62 59 59 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 54 62 62 59 59 62 62 62 62 62 62 62 62 59 59 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 59 62 62 54 62 62 62 59 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 54 62 62 62 62 54 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 49 54 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 56 62 62 62 56 54 62 62 62 62 62 54 62 62 62 62 54 62 62 62 62 62 62 54 54 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 58 58 58 54 58 58 58 58 58 54 58 58 58 58 58 54 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 52 58 45 39 58 58 58 54 58 58 58 58 54 58 54 54 54 52 58 54 52 58 58 58 58 58 47 58 58 51 42 58 58 45 37 58 45 47 53 58 53 51 58 48 58 58 58 53 53 58 51 40 58 58 58 49 58 38 50 49 58 58 51 53 58 51 50 58 32 58 40 53 58 54 54 58 58 36 29 48 34 58 48 58 58 37 38 39 58 58 48 40 50 58 32 58 46 58 39 44 44 44 42 39 58 58 33 40 51 58 50 41 46 34 51 41 49 58 49 41 51 50 54 52 51 40 44 33 46 52 50 33 37 51 37 54 44 52 42 53 54 52 40 45 53 40 52 53 53 50 41 35 39 49 47 39 51 51 39 30 44 51 52 53 39 51 54 42 49 37 52 42 30 42 42 40 52 53 42 32 52 51 33 40 34 52 47 38 53 53 37 27 36 46 31 53 37 22 30 31 52 51 31 37 32 51 25 53 53 40 39 31 39 29 31 37 42 34 51 37 30 40 33 33 33 31 46 52 41 28 52 47 32 31 32 33 28 51 24 31 28 42 35 45 46 46 27 30 34 33 37 30 34 16 19 24 33 38 30 32 42 31 30 36 42 31 27 30 33 46 21 31 28 31 31 31 31 31 46 46 31 32 33 15 27 36 32 31 43 38 24 42 26 22 48 31 29 32 31 31 26 34 26 31 31 31 31 34 33 32 48 41 14 31 31 34 38 31 26 21 32 39 27 18 27 37 31 23 21 32 39 21 32 24 31 31 24 22 33 10 21 8 38 27 22 30 14 17 17 36 21 25 17 31 23 36 38 31 24 42 38 31 22 38 22 31 26 31 22 34 23 15 25 30 14 13 25 7 4 12 18 27 14 19 11 25 25 18 12 10 26 9 18 18 32 17 27 32 37 13 22 32 15 15 31 13 11 43 25 19 39 32 13 10 12 33 27 33 23 25 13 15 26 10 11 28 19 18 7 11 5 6 10 17 30 9 21 20 20 27 11 38 10 27 6 40 7 27 20 18 13 17 7 22 7 8 9 11 20 10 6 24 10 11 5 3 6 8 14 6 3 3 4 12 3 3 3 12

Alignment Information

BAC End 1

BAC End 2

seq1: chr5_105950555_105951690
seq2: B6Ng01-206I08.b_43_1175

seq1  GAATTCTAACAGAAATGAACAACTTGAACTCTTATGTAAAGTTTATTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAACAGAAATGAACAACTTGAACTCTTATGTAAAGTTTATTTTT  50

seq1  TAAAGAACAATTCAGAGTCAGAAATATTTTAATTTCCAAATACCCAGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAACAATTCAGAGTCAGAAATATTTTAATTTCCAAATACCCAGTTT  100

seq1  TTATCAAATTATTATGTTTAATTGATCGATTGATTGATTGATTGATTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAAATTATTATGTTTAATTGATCGATTGATTGATTGATTGATTGAT  150

seq1  TGATTGATTGAGACAGGGAACTGGCTGTCTTGGAACTTGCTCTGTAAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGATTGAGACAGGGAACTGGCTGTCTTGGAACTTGCTCTGTAAGAC  200

seq1  CAGGCTAGCCTCAAACTCAGAGGTCTGTCTGCTTCTGCCTCCAAAGTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTAGCCTCAAACTCAGAGGTCTGTCTGCTTCTGCCTCCAAAGTGCT  250

seq1  GAGATTAAAGGAGTGCACCACCACTGATTGCCAGTGACTTTTAAATCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTAAAGGAGTGCACCACCACTGATTGCCAGTGACTTTTAAATCTTC  300

seq1  TGTAGTACTTTAATCCATAGTCATTGGCACCATGGTAATAAAGCCCAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTACTTTAATCCATAGTCATTGGCACCATGGTAATAAAGCCCAAGT  350

seq1  TTAAAGAGAAATGAAATAAAAGTTATACTTATTTAGCAAGACTTGTCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGAGAAATGAAATAAAAGTTATACTTATTTAGCAAGACTTGTCTTA  400

seq1  ATGATTTGAAAACATTTCTGTTACGTTAACTGTCTGGCCTGGTGTCTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTGAAAACATTTCTGTTACGTTAACTGTCTGGCCTGGTGTCTCTC  450

seq1  CCATCCTAAGAGGGATGGTTCCATACCCATTTTATAGAATGGGGCTCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCTAAGAGGGATGGTTCCATACCCATTTTATAGAATGGGGCTCAGA  500

seq1  GTTTATGACTTGGCAATGCCATGCAGATGGAATATCCTGAGTGGATGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATGACTTGGCAATGCCATGCAGATGGAATATCCTGAGTGGATGCAG  550

seq1  TCGGGCACCATACTGCTTGCCCTTGTTTGTTTAGGCACAGTCTTGCTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGCACCATACTGCTTGCCCTTGTTTGTTTAGGCACAGTCTTGCTTTG  600

seq1  CCACCCAGTCTTAACCTCACAGTCCTGACAATCTTCCTGCCTCAGCCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCAGTCTTAACCTCACAGTCCTGACAATCTTCCTGCCTCAGCCTCT  650

seq1  TGAGTGATAGAAGTACACATGTGAGTTCACCACATCTGGTTCTCTTTAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGATAGAAGTACACATGTGAGTTCACCACATCTGGTTCTCTTTAGT  700

seq1  TCTCAATGTTACCCCTTGTCCCATTATCCAAAGGCTCCCCCCACCACCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAATGTTACCCCTTGTCCCATTATCCAAAGGCTCCCCCCACCACCTA  750

seq1  AAACTAACCATAACACCTGCACAAGAAAACAGAAATTAAGAGCATAAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAACCATAACACCTGCACAAGAAAACAGAAATTAAGAGCATAAAGT  800

seq1  AACCTCTCCAGAGTTTGCCACGCCCTGGTTGATCTGCAACAGAGTTTGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCTCCAGAGTTTGCCACGCCCTGGTTGATCTGCAACAGAGTTTGAA  850

seq1  TTTTGAGTAAGGACAGTCTGTTTCCAAAGCTGGTGTTCTTTTGACTGATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGTAAGGACAGTCTGTTTCCAAAGCTGGTGTTCTTTTGACTGATT  900

seq1  GCAACTAAATGAATAATTTGAAACGACCCAGAGGACCACTGTGTCCTCTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTAAATGAATAATTTGAAACGACCCAGAGGACCACTGTGTCCTCTC  950

seq1  CCATCAGCTGCTCTTGGCAACTGTATCTCATGGACTATACATTCCCAGGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAGCTGCTCTTGGCAACTGTATCTCATGGACTATACATTCCCAGGA  1000

seq1  -TTTTCTCCCTCATCCCAGAAATGTTGGCTGTGTCTCTCATCTTGGTTCA  1049
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTCCCTCATCCCAGAAATGTTGGCTGTGTCTCTCATCTTGGTTCA  1050

seq1  TCTGTGAACATATATTACACTAATGAGGTTGACGTTACTATGCAGGTGTC  1099
      |||||||||||||||||||   |||||  |||||||||||||||||||||
seq2  TCTGTGAACATATATTACAACTATGAG--TGACGTTACTATGCAGGTGTC  1098

seq1  GTGGAGGTGTCTTTGACTCCATTTCTTTTCAATATAA  1136
      |||||||||||||||||| |||||| |||||||||||
seq2  GTGGAGGTGTCTTTGACT-CATTTC-TTTCAATATAA  1133

seq1: chr5_106003472_106004300
seq2: B6Ng01-206I08.g_523_1103 (reverse)

seq1  TACTTATGTATAATAATAAATGGATCTTTAGATCCGAGCGAGCAGGACCG  50
                                                        
seq2  --------------------------------------------------  0

seq1  ACCAGAATGAGCAGAGATCCTGAATTCAAATTCCCAGCAACCACATGATG  100
                                                        
seq2  --------------------------------------------------  0

seq1  GCTCACAACCATCAGTACAGCTATAGTGTACTCATATACATAAAATAAAT  150
                                                        
seq2  --------------------------------------------------  0

seq1  AAATAAATAAATAAATCTTTTAAAGAAAGAAAGAGGGAGGGAGGGAGGGA  200
                                                        
seq2  --------------------------------------------------  0

seq1  GGGAGGGAGGGAGGGAGGGAGGAAAGAAGGAAGGAAGGAAGGAAGGAAGG  250
                                                    |   
seq2  ---------------------------------------------TACTT  5

seq1  AAGGA-AGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA-CCAGTG  298
      | | | ||  ||||   |||||   ||||||| ||| |||||| ||||||
seq2  ATGTATAGATAGGA---AAGGA---AAGGAAGAAAGAAAGGAACCCAGTG  49

seq1  TTGCACTAACCAGCACTGGGCCCTGTGTCCTCTTGCTGTCTGAGGTGGCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACTAACCAGCACTGGGCCCTGTGTCCTCTTGCTGTCTGAGGTGGCT  99

seq1  TCCCAACCTTGCTCCTTTGGGTGGGTATGTTTGTGTGCCTCTCTGATAGC  398
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-CCAACCTTGCTCCTTTGGGTGGGTATGTTTGTGTGCCTCTCTGATAGC  148

seq1  CTTCAATGCCTATAAGTACCCAGCTGACTAGTGCTTTGAGCCATTATTTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAATGCCTATAAGTACCCAGCTGACTAGTGCTTTGAGCCATTATTTC  198

seq1  CCCAGACACCTCAGGAGCACATCCTGGTACGATAAAAGTTAACCTCAAGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGACACCTCAGGAGCACATCCTGGTACGATAAAAGTTAACCTCAAGG  248

seq1  GAGGGTTCAGTCCAGCTGGATTTCTCCAAGCTTGCACCCGAAGCATGACA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTTCAGTCCAGCTGGATTTCTCCAAGCTTGCACCCGAAGCATGACA  298

seq1  CGTCTATCTATAGCAATAAGGTCCAGTTATGGCATGTGACCAACGGCACT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTATCTATAGCAATAAGGTCCAGTTATGGCATGTGACCAACGGCACT  348

seq1  GTTGGCAGTGTGGGTGGCCTTTATCCCTTGGGAGCCTCTGGGGTCTCATT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCAGTGTGGGTGGCCTTTATCCCTTGGGAGCCTCTGGGGTCTCATT  398

seq1  GGCCAACAACTCTTAGGAAAATAACTCAGTCCGAGCACT-GGATCCTCAG  697
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GGCCAACAACTCTTAGGAAAATAACTCAGTCCGAGCACTGGGATCCTCAG  448

seq1  TCAACAACCCTGTGGCTTAAGGGAGAATCCTTTCCCACCCACACAAAAAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAACCCTGTGGCTTAAGGGAGAATCCTTTCCCACCCACACAAAAAG  498

seq1  TGTTTGCTCACTCTTTAATATTGGCTGCCACAGAATTTTTCAATCACCTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGCTCACTCTTTAATATTGGCTGCCACAGAATTTTTCAATCACCTT  548

seq1  GGTGGGTTTCCTCTGGGCCTTA-CCAACCATAA  829
      |||||||||||||||||||||| ||||||||||
seq2  GGTGGGTTTCCTCTGGGCCTTACCCAACCATAA  581

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information