BAC Information

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BAC

Clone NameB6Ng01-206N18
Chromosome5 (Build37)
Map Location 32,480,532 - 32,598,493
singlet/doubletdoublet
Overlap geneLOC672217, Plb1
Upstream geneGtf3c2, Eif2b4, Snx17, Zfp513, Ppm1g, ENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4, Gckr, Zfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap, Mrpl33, Rbks, LOC100040000, Bre, Fosl2
Downstream geneEG665350, LOC545743, Ppp1cb, LOC634553, LOC675983, Yes1, LOC100039775, Pisd, C330019G07Rik, LOC100040141, Depdc5, Ywhah, LOC100040169, Slc5a1, Spon2, Ctbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-206N18.bB6Ng01-206N18.g
ACCGA026166GA026167
length1,0891,006
definitionB6Ng01-206N18.b B6Ng01-206N18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,597,405 - 32,598,493)(32,480,532 - 32,481,066)
sequence
aattctcagttattcagagttgttcaatatgtatttagtggtccctctca
tttgctaagtcagtagggatgtatgaagatggtcagctctaacaggatgt
gtaccacctgttcccatttcaattagacatcattaacagggtctccagag
agggaagaatttaccagaaacacggtaacaatcagaggaacatagttgtg
tgctcttttactaaggtttttcttttccctcttttattttttttaaacat
gtaactgtttcaggtgcaaatatggttagaatgctcagtcatggatcagt
ggcacaaaatgaaaaatttttccttattttttatgtcattttctgcagtt
gttttcctgagtgatactttccaagaaactcagaggtgaaccccaacact
cttaagtgagtctgaatttcactagatgggcatgtgtgtcataggccatc
tggttagctcagcgaggcttggatcaacatatctatctgtttacttaaac
agtgcctatcactgaggtatctcagatcataaggcttgagatctgccctt
gaattcttcaagtactaataaacacaatagtcaccagggtcagggagtaa
ggaagagactgtactttatctggtttttagatggggagataggttctaat
ggatggttaccaagacagaaacacaatttagggagattgtaaaatacttt
acagatcaccctctctcagagtgataagattaaagtatggttattaaagc
tttcaaactgatactctatctatctcgatatatgcaatatctctatactc
agacctctatctatgtcttagagtaagggtttttaactgccggagggcat
acaaataaaggtgatctttttctgctgttaaagtccacctagtaaataga
tcaacagaaattcagtgtcatcaaacacaggagcaagaagtataaagact
aaactcatcttcatttatcatcatctgcatcacttctggtggggtttggt
ggatgtgatttggttccccaagactcaagttcagaggtttggtcctcaat
atagctgtgtgaaagagtagaatattaagagaatgggcc
gaattctgtgtcagtcgagcttgctgcagctcaggagcaacacatacata
cacatacatacatacatacatacatacatacatacaaacatacaaacata
caaacatacatacatacacacatgctcacactcatacacacatatacata
cacacatatacatatacacatatgtagagcatgtgagactgaactaccag
ataggcataagaaccagtgaggtggagcatgctcaaaccccaggaatctc
agagatctgatgttacccgcgttcgcccaactggccaggaagaacgacgc
tgctacaggatccttctgcacacgtttattcagtcctgtttcttcttgtt
tatatctcccttgtttatatctcccttgtttatatatctcccttgttttt
atatctcccttgtttttatatctcccttgtttttatatctcccttgtttt
tatatctcccccgaaccctgggcctctcactccttttatactctctctca
tccacgcaccgcaggccacgccccctcatcagtcacgaggcttcagctaa
tcagggcagcaggggcaaatctccaccaaattggattcatctgtatcctg
gtacacctgcgcagcactcaagatgtttgtgtcttatatgaggaagtcag
gtgcaagtcatatgacttagctgcagtccctggcacctttaggactgccg
ccacacccgctccccacaatctgagacggtaggagtggagctgcccctcc
cagcctccaatgttgttctggaacacataatgcgactaccagctgaaacc
ctgggcacccagtcatagcatagcgcctggagctcttccctatactaatg
aagtatctagatagcttttaccttcagctagtgacattcctggaaattct
catgcccctccccccaaaatattacagtccctggttcacctccaataaag
tgtatggcattcacattccaccccaataaagaaataatgaacacgctaag
atcatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_32597405_32598493
seq2: B6Ng01-206N18.b_56_1144 (reverse)

seq1  GGCCCA-TCTCTTAAATTTCTACCTCCTTCACACCACTATATTGAGGACC  49
      |||||| ||||||||  ||||| ||| |||||||  ||||||||||||||
seq2  GGCCCATTCTCTTAATATTCTA-CTCTTTCACACAGCTATATTGAGGACC  49

seq1  AAACCTTCTGAACTTGAGTCTTTGGGGGACCAAATCACATCCA-CAAACC  98
      ||||| |||||||||||||| |||||| ||||||||||||||| ||||||
seq2  AAACC-TCTGAACTTGAGTC-TTGGGGAACCAAATCACATCCACCAAACC  97

seq1  CCA-CAGAAGTGATGCAGATGATGATAAATGAAGATGAGTTTAGTCTTTA  147
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAGAAGTGATGCAGATGATGATAAATGAAGATGAGTTTAGTCTTTA  147

seq1  TACTTCTTGCTCCTGTGTTTGATGACACTGAATTTCTGTTGATCTATTTA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCTTGCTCCTGTGTTTGATGACACTGAATTTCTGTTGATCTATTTA  197

seq1  CTAGGTGGACTTTAACAGCAGAAAAAGATCACCTTTATTTGTATGCCCTC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTGGACTTTAACAGCAGAAAAAGATCACCTTTATTTGTATGCCCTC  247

seq1  CGGCAGTTAAAAACCCTTACTCTAAGACATAGATAGAGGTCTGAGTATAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCAGTTAAAAACCCTTACTCTAAGACATAGATAGAGGTCTGAGTATAG  297

seq1  AGATATTGCATATATCGAGATAGATAGAGTATCAGTTTGAAAGCTTTAAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTGCATATATCGAGATAGATAGAGTATCAGTTTGAAAGCTTTAAT  347

seq1  AACCATACTTTAATCTTATCACTCTGAGAGAGGGTGATCTGTAAAGTATT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATACTTTAATCTTATCACTCTGAGAGAGGGTGATCTGTAAAGTATT  397

seq1  TTACAATCTCCCTAAATTGTGTTTCTGTCTTGGTAACCATCCATTAGAAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAATCTCCCTAAATTGTGTTTCTGTCTTGGTAACCATCCATTAGAAC  447

seq1  CTATCTCCCCATCTAAAAACCAGATAAAGTACAGTCTCTTCCTTACTCCC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTCCCCATCTAAAAACCAGATAAAGTACAGTCTCTTCCTTACTCCC  497

seq1  TGACCCTGGTGACTATTGTGTTTATTAGTACTTGAAGAATTCAAGGGCAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCTGGTGACTATTGTGTTTATTAGTACTTGAAGAATTCAAGGGCAG  547

seq1  ATCTCAAGCCTTATGATCTGAGATACCTCAGTGATAGGCACTGTTTAAGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAAGCCTTATGATCTGAGATACCTCAGTGATAGGCACTGTTTAAGT  597

seq1  AAACAGATAGATATGTTGATCCAAGCCTCGCTGAGCTAACCAGATGGCCT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGATAGATATGTTGATCCAAGCCTCGCTGAGCTAACCAGATGGCCT  647

seq1  ATGACACACATGCCCATCTAGTGAAATTCAGACTCACTTAAGAGTGTTGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACACACATGCCCATCTAGTGAAATTCAGACTCACTTAAGAGTGTTGG  697

seq1  GGTTCACCTCTGAGTTTCTTGGAAAGTATCACTCAGGAAAACAACTGCAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCACCTCTGAGTTTCTTGGAAAGTATCACTCAGGAAAACAACTGCAG  747

seq1  AAAATGACATAAAAAATAAGGAAAAATTTTTCATTTTGTGCCACTGATCC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGACATAAAAAATAAGGAAAAATTTTTCATTTTGTGCCACTGATCC  797

seq1  ATGACTGAGCATTCTAACCATATTTGCACCTGAAACAGTTACATGTTTAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTGAGCATTCTAACCATATTTGCACCTGAAACAGTTACATGTTTAA  847

seq1  AAAAAATAAAAGAGGGAAAAGAAAAACCTTAGTAAAAGAGCACACAACTA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATAAAAGAGGGAAAAGAAAAACCTTAGTAAAAGAGCACACAACTA  897

seq1  TGTTCCTCTGATTGTTACCGTGTTTCTGGTAAATTCTTCCCTCTCTGGAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTCTGATTGTTACCGTGTTTCTGGTAAATTCTTCCCTCTCTGGAG  947

seq1  ACCCTGTTAATGATGTCTAATTGAAATGGGAACAGGTGGTACACATCCTG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTTAATGATGTCTAATTGAAATGGGAACAGGTGGTACACATCCTG  997

seq1  TTAGAGCTGACCATCTTCATACATCCCTACTGACTTAGCAAATGAGAGGG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGCTGACCATCTTCATACATCCCTACTGACTTAGCAAATGAGAGGG  1047

seq1  ACCACTAAATACATATTGAACAACTCTGAATAACTGAGAATT  1089
      ||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTAAATACATATTGAACAACTCTGAATAACTGAGAATT  1089

seq1: chr5_32480532_32481066
seq2: B6Ng01-206N18.g_71_605

seq1  GAATTCTGTGTCAGTCGAGCTTGCTGCAGCTCAGGAGCAACACATACATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGTCAGTCGAGCTTGCTGCAGCTCAGGAGCAACACATACATA  50

seq1  CACATACATACATACATACATACATACATACATACAAACATACAAACATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACATACATACATACATACATACATACATACAAACATACAAACATA  100

seq1  CAAACATACATACATACACACATGCTCACACTCATACACACATATACATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATACATACATACACACATGCTCACACTCATACACACATATACATA  150

seq1  CACACATATACATATACACATATGTAGAGCATGTGAGACTGAACTACCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATATACATATACACATATGTAGAGCATGTGAGACTGAACTACCAG  200

seq1  ATAGGCATAAGAACCAGTGAGGTGGAGCATGCTCAAACCCCAGGAATCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCATAAGAACCAGTGAGGTGGAGCATGCTCAAACCCCAGGAATCTC  250

seq1  AGAGATCTGATGTTACCCGCGTTCGCCCAACTGGCCAGGAAGAACGACGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATCTGATGTTACCCGCGTTCGCCCAACTGGCCAGGAAGAACGACGC  300

seq1  TGCTACAGGATCCTTCTGCACACGTTTATTCAGTCCTGTTTCTTCTTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACAGGATCCTTCTGCACACGTTTATTCAGTCCTGTTTCTTCTTGTT  350

seq1  TATATCTCCCTTGTTTATATCTCCCTTGTTTATATATCTCCCTTGTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTCCCTTGTTTATATCTCCCTTGTTTATATATCTCCCTTGTTTTT  400

seq1  ATATCTCCCTTGTTTTTATATCTCCCTTGTTTTTATATCTCCCTTGTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTCCCTTGTTTTTATATCTCCCTTGTTTTTATATCTCCCTTGTTTT  450

seq1  TATATCTCCCCCGAACCCTGGGCCTCTCACTCCTTTTATACTCTCTCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTCCCCCGAACCCTGGGCCTCTCACTCCTTTTATACTCTCTCTCA  500

seq1  TCCACGCACCGCAGGCCACGCCCCCTCATCAGTCA  535
      |||||||||||||||||||||||||||||||||||
seq2  TCCACGCACCGCAGGCCACGCCCCCTCATCAGTCA  535