BAC Information

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BAC

Clone NameB6Ng01-207B15
Chromosome5 (Build37)
Map Location 72,272,416 - 72,273,515
singlet/doubletsinglet
Overlap geneGabrb1
Upstream geneGabra2, LOC635092, 4930503B16Rik, Gabra4
Downstream geneLOC666545, Commd8, Atp10d, Corin, Nfxl1, Zar1, EG545758, Cnga1, LOC384275, Npal1, Txk, Tec
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-207B15.bB6Ng01-207B15.g
ACCGA026343GA026344
length1,106823
definitionB6Ng01-207B15.b B6Ng01-207B15.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctgaaattcaggtatcagaaatgaggttattgcttacaagaaa
tctgtgtccttgtgtgggcctcgagaactcggctactgtatttatactgc
tagctctacttcaaattgatttcttttgtattcttggctgttcgtgacca
caggttatgtgtgagaataaaatcaatcactacacttttattgactgtaa
aagaaagatagagtttctcacattcccttggagaatcatcttatcttgcc
ttagtctttatgatggagcacctaaagagcagaggcaattaccttgataa
cacagatcccaaaacataaaaatgtatagatattgattgatttctatagc
agtttggaggtcctcgttgtttcatattatttttctgtgttgcttgtgga
ccatgaaaactgttctctctcctaaaacttggcccacacagagcagttat
gatgacattaaagagctctcagcagctggcaaggagctctatgtgcgtac
actaagcaacagcattgtagagttgagaacagagactggatacttgggct
gatgtggtgtttgcagaggactcatattggcaaatgtactttgtaagaga
aagaagcttgtagttttgagttaaagaaaagaaaatagaccacacataaa
caacaggtagatcagtttattagaaagaatggatggggacataccttgca
gttcctactaaggggaaggactggaatgtctctcactgtctagtgacctt
atattttataacttcatcagtgaaacacaggaagagccattttaaatggt
ttccgatgaaagcactactatttttgcctaagtttttattttttaatgaa
taagtaattatattaaaaaagttatgattaaatgatgtttcttagggtct
tctttctcataaatatcattgtgactaatttaaatacttgataagctatt
ttatataataatgcagttactataacttatgtgtgaccatgtggtttttt
tttaaagtgtcattatgattagcgctctgtattaattattacaattatta
aatacaacagtgaccagacattatttttttaaatatatctcaattcacag
gcttgg
gaattcagaaatcaacctaggatgttatttctcagatattgtctaccttt
ctttgtatgagacgaggtctttcatttgccttggagcttaccccacagca
ggatggctgggtgacagcttggccgagacccacttatctccacttccttc
atgcttgaattataagcacacaccaccacatcagacttctttgaatcttg
gggaccaaacttaggttctcatgcttggatagtaagcaatgactgagcta
tctccctagcttctagtatcctatttttattatccatcagttatctatat
gctctagtaataaatggatgggtgcggggggataaagggagtgggagaaa
acctgtatcctgccagagttctggtgctttgggcaggcagacgtggaagg
actgttgcatgttttctatgtggcccgggtgggtgtctggctgtgtgaag
ccacggaatcccagcttgcttgggggtgaataaggggcagtcctagataa
caggttctggtctccaacatcccaagctggatgccacagaggagcttgag
aacaaatgggggctcccaggggctgctcgtcagccagggccaagggagga
aagggaagggagagagggaggcactgtgtggtttcccacgcagtgagaat
ccttggtcctgtctggcttgtttgggggaaatcctatcccattgttcaag
cttcggcaggcccttgtataaagcagagacaggctatggtttttagagct
tttgttgtagaaaggctttagatgatgacagctttttatagtgggctggg
tccataaagtaactgctgggatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_72272416_72273515
seq2: B6Ng01-207B15.b_47_1152

seq1  GAATTCTCTGAAATTCAGGTATCAGAAATGAGGTTATTGCTTACAAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGAAATTCAGGTATCAGAAATGAGGTTATTGCTTACAAGAAA  50

seq1  TCTGTGTCCTTGTGTGGGCCTCGAGAACTCGGCTACTGTATTTATACTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTCCTTGTGTGGGCCTCGAGAACTCGGCTACTGTATTTATACTGC  100

seq1  TAGCTCTACTTCAAATTGATTTCTTTTGTATTCTTGGCTGTTCGTGACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCTACTTCAAATTGATTTCTTTTGTATTCTTGGCTGTTCGTGACCA  150

seq1  CAGGTTATGTGTGAGAATAAAATCAATCACTACACTTTTATTGACTGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTATGTGTGAGAATAAAATCAATCACTACACTTTTATTGACTGTAA  200

seq1  AAGAAAGATAGAGTTTCTCACATTCCCTTGGAGAATCATCTTATCTTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGATAGAGTTTCTCACATTCCCTTGGAGAATCATCTTATCTTGCC  250

seq1  TTAGTCTTTATGATGGAGCACCTAAAGAGCAGAGGCAATTACCTTGATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCTTTATGATGGAGCACCTAAAGAGCAGAGGCAATTACCTTGATAA  300

seq1  CACAGATCCCAAAACATAAAAATGTATAGATATTGATTGATTTCTATAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATCCCAAAACATAAAAATGTATAGATATTGATTGATTTCTATAGC  350

seq1  AGTTTGGAGGTCCTCGTTGTTTCATATTATTTTTCTGTGTTGCTTGTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGGAGGTCCTCGTTGTTTCATATTATTTTTCTGTGTTGCTTGTGGA  400

seq1  CCATGAAAACTGTTCTCTCTCCTAAAACTTGGCCCACACAGAGCAGTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAAAACTGTTCTCTCTCCTAAAACTTGGCCCACACAGAGCAGTTAT  450

seq1  GATGACATTAAAGAGCTCTCAGCAGCTGGCAAGGAGCTCTATGTGCGTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACATTAAAGAGCTCTCAGCAGCTGGCAAGGAGCTCTATGTGCGTAC  500

seq1  ACTAAGCAACAGCATTGTAGAGTTGAGAACAGAGACTGGATACTTGGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGCAACAGCATTGTAGAGTTGAGAACAGAGACTGGATACTTGGGCT  550

seq1  GATGTGGTGTTTGCAGAGGACTCATATTGGCAAATGTACTTTGTAAGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGGTGTTTGCAGAGGACTCATATTGGCAAATGTACTTTGTAAGAGA  600

seq1  AAGAAGCTTGTAGTTTTGAGTTAAAGAAAAGAAAATAGACCACACATAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGCTTGTAGTTTTGAGTTAAAGAAAAGAAAATAGACCACACATAAA  650

seq1  CAACAGGTAGATCAGTTTATTAGAAAGAATGGATGGGGACATACCTTGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGGTAGATCAGTTTATTAGAAAGAATGGATGGGGACATACCTTGCA  700

seq1  GTTCCTACTAAGGGGAAGGACTGGAATGTCTCTCACTGTCTAGTGACCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTACTAAGGGGAAGGACTGGAATGTCTCTCACTGTCTAGTGACCTT  750

seq1  ATATTTTATAACTTCATCAGTGAAACACAGGAAGAGCCATTTTAAATGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTATAACTTCATCAGTGAAACACAGGAAGAGCCATTTTAAATGGT  800

seq1  TTCCGATGAAAGCACTACTATTTTTGCCTAAGTTTTTA-TTTTTAATGAA  849
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTCCGATGAAAGCACTACTATTTTTGCCTAAGTTTTTATTTTTTAATGAA  850

seq1  TAAGTAATTATATT-AAAAAGTTATGATTAAATGATGTTTCTTAGGGTCT  898
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TAAGTAATTATATTAAAAAAGTTATGATTAAATGATGTTTCTTAGGGTCT  900

seq1  TCTTTCTCATAAATATCATTGTGACTAATTTAAATACTTGATAAGCTA-T  947
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCTTTCTCATAAATATCATTGTGACTAATTTAAATACTTGATAAGCTATT  950

seq1  TTATATAATAATGCAGTTACTATAACTTATGTGTGACCATGTGG-TTTTT  996
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTATATAATAATGCAGTTACTATAACTTATGTGTGACCATGTGGTTTTTT  1000

seq1  TTTAAAGTGTCATTATGATTAGCGCTCTGTAATTAATA-TACAA-TATTA  1044
      ||||||||||||||||||||||||||||||| | | || ||||| |||||
seq2  TTTAAAGTGTCATTATGATTAGCGCTCTGTATTAATTATTACAATTATTA  1050

seq1  AATACAAACAGTGACCAGACA--ATATTTTTAAATATATCTCAAATTCAC  1092
      ||||| |||||||||||||||  || |||||||||||||||| |||||||
seq2  AATAC-AACAGTGACCAGACATTATTTTTTTAAATATATCTC-AATTCAC  1098

seq1  AAGCTTGG  1100
      | ||||||
seq2  AGGCTTGG  1106