BAC Information

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BAC

Clone NameB6Ng01-207K02
Chromosome5 (Build37)
Map Location 120,280,959 - 120,411,488
singlet/doubletdoublet
Overlap geneEG433945, Tbx5
Upstream geneLOC100039488, EG665194, LOC100039529, LOC100039542, Tbx3
Downstream geneRbm19, LOC100039609, Lhx5, Sdsl, Sds, 1300012G16Rik, Slc24a6, Tpcn1, Iqcd, 1110008J03Rik, Ddx54, LOC546886, Rasal1, Dtx1, Oas2, Oas3, Oas1e, Oas1c, Oas1b, Oas1f, Oas1h, Oas1g, Oas1a, Oas1d, Oas1i, Rph3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-207K02.bB6Ng01-207K02.g
ACCGA026726GA026727
length1,156824
definitionB6Ng01-207K02.b B6Ng01-207K02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,410,320 - 120,411,488)(120,280,959 - 120,281,781)
sequence
gaattcaaagtcagctcagtctacctagtgggacactgtctcaaaaaaaa
aataaataagaaagaaagaaagaaaagaaaaagaaaaagaaaaggaaagg
aaagaaaagaaaagaaaagaaaagaaaagaaaaaaaaagaaaagaaaaga
aaaaaactacccccagcgactgaccaccaaactccacctctcaaaagttc
tagcatttcccaacaatgccatgctggggtctcttgttttaccacataga
ccattggagggcctttaagcagggcatgacagtacaaatctatactctca
gcctttggcaggccgagggagaaggagcctaagtttgaggccagctttgg
ctacatgacttataccatgactccctaggatctgtctggggtttgttcta
agctgactggcctgaccatctttgtcacctgtattagttatgatgtttct
tggtgtcgactcccatgctacattttaaatgtggctgggggccacgttct
gacaaggctgaagagaggagactgttgtgtgaatggggaggagagagagc
aggaggagaagacaccaccttcccaggaaggtttcccatcatccctatcc
ctcattacaacccctggcaaatgaccaatacagtggcaagctctgagttc
ccaacacccttggggcaggcacatggaccatttatgcttctagaatctac
cacaccagcaaggggtaagacgtgctggaccaagctgtgtttggggaatt
agaaccacatcagctcataccccagctccctcttgctggatgtcatggtg
tcccccgcccccaaatgaacactggccactttaacttagctcacagactc
tctgggtaggaagttagacacagcaccgatggtggaccagccatctcttt
atcactgtgatgaaatacccaacataaacaccttattcagagaaaaggct
ttgcttgacacagttttacttggcgctttgccctggtgtgcggtgacaca
gaacatcatagccagagtattgggcagaaccagtttgtcgactcactggt
gttcagaagcaaaaaagaggtgggagagttcagagtcccatatccccaca
ggagcatgcacccagtgactattcttccatcatgcctaaagatctatctc
acaagt
gaattccgggtcttcctatctttcgaggtatttaagatcaaggcggaaat
tttgcaaaagggggcaaggaagtatgagaaaaaccagcggggagcagggt
taggaaagcgcaactcttggaaagaaggaaggtgccaggcgtgtatgttg
ctgccctctcccgcacagaggatgagggtgaagcggacaaggagacgctg
aggctgcagtctcttcccgtggtggttgctttctccagagcacggggcca
gtctctgaagctgggcttggcccaggtagttgcacccgaaattgcggagc
aatgggggaaagtgaaaggaactcggcccactcgcggggcaccctcggtc
tgggtttcctgcccccacctcggttctcctggtcaccctactcgaatacg
gggacaaggattctggattgcattcttgggtgaaaacgtgaatttggggc
tcgttcgcctgggaaacgaaagcaaagctggagcaccaggccgggcagcc
tggactcttggggaagagaacagggatgcacgctggtgtcctgcatctgt
gctgcaggctgctgccccgctgtcccttggggcctgaccttggctctacc
gctgcagggccgcccgtgtcactgccgctccaatcctcggtggactgcga
ccagaaccgggtcatgcttctgggaatcctaaagtttcagggatcgcaaa
accccaggacaagttcagatggaatgtctggctctcctggggcccgcaac
gcgggggttggggtgggggcggcgggaggagaaactttaccctcggaagg
ccctgacgctctcttgctccgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_120410320_120411488
seq2: B6Ng01-207K02.b_42_1197 (reverse)

seq1  ACTTGTGGGAGATAGGATCTTTAGGGCATGATGGGAGGAAATTAGGTCAC  50
      ||||||  |||||| |||||||| |||||||||| || | |    |||||
seq2  ACTTGT--GAGATA-GATCTTTA-GGCATGATGGAAGAATA----GTCAC  42

seq1  TGGGTGCATGCTCCTGTGGGGATATTGGGACTCTGAACTCTTCCCACCTC  100
      |||||||||||||||||||||||| ||||||||||||||| |||||||||
seq2  TGGGTGCATGCTCCTGTGGGGATA-TGGGACTCTGAACTC-TCCCACCTC  90

seq1  -TCTTTGCTTCCTGAACACCAGTGAGTCGAACAAACTGGTTCTGCCCAAT  149
       | ||||||| |||||||||||||||||| ||||||||||||||||||||
seq2  TTTTTTGCTT-CTGAACACCAGTGAGTCG-ACAAACTGGTTCTGCCCAAT  138

seq1  ACTCTGGCTATGATGTTCTGTGTCACCGCACACCCAGGGCAAAAGCGCCA  199
      |||||||||||||||||||||||||||||||| ||||||| |||||||||
seq2  ACTCTGGCTATGATGTTCTGTGTCACCGCACA-CCAGGGC-AAAGCGCCA  186

seq1  AGTAAAACTGTGGTCAAGCAAAGCCTTTTCTCTGAATAAGGTGTTTATGT  249
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAACTGT-GTCAAGCAAAGCCTTTTCTCTGAATAAGGTGTTTATGT  235

seq1  TGGGTATTTCATCACAGTGATAAAGAGATGGCTGGTCCACCATCGGTGCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTATTTCATCACAGTGATAAAGAGATGGCTGGTCCACCATCGGTGCT  285

seq1  GTGTCTAACTTCCTACCCAGAGAGTCTGTGAGCTAAGTT-AAGTGGCCAG  348
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GTGTCTAACTTCCTACCCAGAGAGTCTGTGAGCTAAGTTAAAGTGGCCAG  335

seq1  TGTTCATTTGGGGGCGGGGGACACCATGACATCCAGCAAGAGGGAGCTGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATTTGGGGGCGGGGGACACCATGACATCCAGCAAGAGGGAGCTGG  385

seq1  GGTATGAGCTGATGTGGTTCTAATTCCCCAAACACAGCTTGGTCCAGCAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGAGCTGATGTGGTTCTAATTCCCCAAACACAGCTTGGTCCAGCAC  435

seq1  GTCTTACCCCTTGCTGGTGTGGTAGATTCTAGAAGCATAAATGGTCCATG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTACCCCTTGCTGGTGTGGTAGATTCTAGAAGCATAAATGGTCCATG  485

seq1  TGCCTGCCCCAAGGGTGTTGGGAACTCAGAGCTTGCCACTGTATTGGTCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGCCCCAAGGGTGTTGGGAACTCAGAGCTTGCCACTGTATTGGTCA  535

seq1  TTTGCCAGGGGTTGTAATGAGGGATAGGGATGATGGGAAACCTTCCTGGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCAGGGGTTGTAATGAGGGATAGGGATGATGGGAAACCTTCCTGGG  585

seq1  AAGGTGGTGTCTTCTCCTCCTGCTCTCTCTCCTCCCCATTCACACAACAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGGTGTCTTCTCCTCCTGCTCTCTCTCCTCCCCATTCACACAACAG  635

seq1  TCTCCTCTCTTCAGCCTTGTCAGAACGTGGCCCCCAGCCACATTTAAAAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCTCTTCAGCCTTGTCAGAACGTGGCCCCCAGCCACATTTAAAAT  685

seq1  GTAGCATGGGAGTCGACACCAAGAAACATCATAACTAATACAGGTGACAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCATGGGAGTCGACACCAAGAAACATCATAACTAATACAGGTGACAA  735

seq1  AGATGGTCAGGCCAGTCAGCTTAGAACAAACCCCAGACAGATCCTAGGGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGTCAGGCCAGTCAGCTTAGAACAAACCCCAGACAGATCCTAGGGA  785

seq1  GTCATGGTATAAGTCATGTAGCCAAAGCTGGCCTCAAACTTAGGCTCCTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGGTATAAGTCATGTAGCCAAAGCTGGCCTCAAACTTAGGCTCCTT  835

seq1  CTCCCTCGGCCTGCCAAAGGCTGAGAGTATAGATTTGTACTGTCATGCCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCGGCCTGCCAAAGGCTGAGAGTATAGATTTGTACTGTCATGCCC  885

seq1  TGCTTAAAGGCCCTCCAATGGTCTATGTGGTAAAACAAGAGACCCCAGCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAAAGGCCCTCCAATGGTCTATGTGGTAAAACAAGAGACCCCAGCA  935

seq1  TGGCATTGTTGGGAAATGCTAGAACTTTTGAGAGGTGGAGTTTGGTGGTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATTGTTGGGAAATGCTAGAACTTTTGAGAGGTGGAGTTTGGTGGTC  985

seq1  AGTCGCTGGGGGTAGTTTTTTTCTTTTCTTTTCTTTTTTTTTCTTTTCTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGCTGGGGGTAGTTTTTTTCTTTTCTTTTCTTTTTTTTTCTTTTCTT  1035

seq1  TTCTTTTCTTTTCTTTTCTTTCCTTTCCTTTTCTTTTTCTTTTTCTTTTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTCTTTTCTTTTCTTTCCTTTCCTTTTCTTTTTCTTTTTCTTTTC  1085

seq1  TTTCTTTCTTTCTTATTTATTTTTTTTTTGAGACAGTGTCCCACTAGGTA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTTTCTTATTTATTTTTTTTTTGAGACAGTGTCCCACTAGGTA  1135

seq1  GACTGAGCTGACTTTGAATTC  1169
      |||||||||||||||||||||
seq2  GACTGAGCTGACTTTGAATTC  1156

seq1: chr5_120280959_120281781
seq2: B6Ng01-207K02.g_65_888

seq1  GAATTCCGGGTCTTCCTATCTTTCGAGGTATTTAAGATCAAGGCGGAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCGGGTCTTCCTATCTTTCGAGGTATTTAAGATCAAGGCGGAAAT  50

seq1  TTTGCAAAAGGGGGCAAGGAAGTATGAGAAAAACCAGCGGGGAGCAGGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAAAAGGGGGCAAGGAAGTATGAGAAAAACCAGCGGGGAGCAGGGT  100

seq1  TAGGAAAGCGCAACTCTTGGAAAGAAGGAAGGTGCCAGGCGTGTATGTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAAGCGCAACTCTTGGAAAGAAGGAAGGTGCCAGGCGTGTATGTTG  150

seq1  CTGCCCTCTCCCGCACAGAGGATGAGGGTGAAGCGGACAAGGAGACGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTCTCCCGCACAGAGGATGAGGGTGAAGCGGACAAGGAGACGCTG  200

seq1  AGGCTGCAGTCTCTTCCCGTGGTGGTTGCTTTCTCCAGAGCACGGGGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGCAGTCTCTTCCCGTGGTGGTTGCTTTCTCCAGAGCACGGGGCCA  250

seq1  GTCTCTGAAGCTGGGCTTGGCCCAGGTAGTTGCACCCGAAATTGCGGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGAAGCTGGGCTTGGCCCAGGTAGTTGCACCCGAAATTGCGGAGC  300

seq1  AATGGGGGAAAGTGAAAGGAACTCGGCCCACTCGCGGGGCACCCTCGGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGGGAAAGTGAAAGGAACTCGGCCCACTCGCGGGGCACCCTCGGTC  350

seq1  TGGGTTTCCTGCCCCCACCTCGGTTCTCCTGGTCACCCTACTCGAATACG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTCCTGCCCCCACCTCGGTTCTCCTGGTCACCCTACTCGAATACG  400

seq1  GGGACAAGGATTCTGGATTGCATTCTTGGGTGAAAACGTGAATTTGGGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAAGGATTCTGGATTGCATTCTTGGGTGAAAACGTGAATTTGGGGC  450

seq1  TCGTTCGCCTGGGAAACGAAAGCAAAGCTGGAGCACCAGGCCGGGCAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTCGCCTGGGAAACGAAAGCAAAGCTGGAGCACCAGGCCGGGCAGCC  500

seq1  TGGACTCTTGGGGAAGAGAACAGGGATGCACGCTGGTGTCCTGCATCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTCTTGGGGAAGAGAACAGGGATGCACGCTGGTGTCCTGCATCTGT  550

seq1  GCTGCAGGCTGCTGCCCCGCTGTCCCTTGGGGCCTGACCTTGGCTCTACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAGGCTGCTGCCCCGCTGTCCCTTGGGGCCTGACCTTGGCTCTACC  600

seq1  GCTGCAGGGCCGCCCGTGTCACTGCCGCTCCAATCCTCGGTGGACTGCGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAGGGCCGCCCGTGTCACTGCCGCTCCAATCCTCGGTGGACTGCGA  650

seq1  CCAGAACCGGGTCATGCTTCTGGGAATCCTAAAGTTTCAGGGATCGCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAACCGGGTCATGCTTCTGGGAATCCTAAAGTTTCAGGGATCGCAAA  700

seq1  ACCCCAGGACAAGTTCAGATGGAATGTCTGGCTCTCCTGGGGCCCGCAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAGGACAAGTTCAGATGGAATGTCTGGCTCTCCTGGGGCCCGCAAC  750

seq1  GCGGGGGTTGGGGTGGGGGCGGCGGGAGGAGAAAC-TTACCCTCGGGAAG  799
      ||||||||||||||||||||||||||||||||||| |||||||||| | |
seq2  GCGGGGGTTGGGGTGGGGGCGGCGGGAGGAGAAACTTTACCCTCGGAAGG  800

seq1  GCCTGACGCTCGCTTGCTCCGTGT  823
       |||||||||| ||||||||||||
seq2  CCCTGACGCTCTCTTGCTCCGTGT  824