BAC Information

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BAC

Clone NameB6Ng01-207L01
Chromosome5 (Build37)
Map Location 138,077,912 - 138,078,841
singlet/doubletsinglet
Overlap geneLrch4
Upstream geneMylc2pl, Emid2, LOC677021, Rabl5, Fis1, Cldn15, Znhit1, Plod3, LOC639992, Vgf, Ap1s1, Serpine1, Trim56, Muc3, LOC100040941, Ache, 2700038N03Rik, Ars2, Trip6, Slc12a9, Ephb4, Zan, EG665591, Epo, Pop7, EG666372, Perq1, Gnb2, Actl6b, Trfr2, Mospd3, EG640050, Pcolce, Fbxo24
Downstream geneSap25, Irs3, Hrbl, LOC624083, 6430598A04Rik, Tsc22d4, 2010007H12Rik, Bcdin3, Zcwpw1, Pilra, Pilrb1, Pilrb2, LOC100041016, LOC100041027, Cyp3a13, LOC666429, Gje1, Azgp1, EG243302, LOC100041050, Smok3a, Smok3b, Smok3c, Zkscan1, Zscan21, Zfp113, Cops6, Mcm7, Ap4m1, Taf6, 2610019P18Rik, BC038925, Gm454, BC055004, 0910001L09Rik, BC037034, Gal3st4, Gpc2, Stag3, Got2-ps1, 2610020C11Rik, LOC433955, EG666533, 1700123K08Rik, Zfp68, LOC665882, A430033K04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-207L01.bB6Ng01-207L01.g
ACCGA026771GA026772
length9381,075
definitionB6Ng01-207L01.b B6Ng01-207L01.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaaggccttcgcctgggcatctcctaactctccctgtgccccgac
tgtagagctgggagaccttcctctggtccgcctggatttctcctgtaacc
gcatctcccgaatccccgtctccttctgccgcctcaggcacctgcaggtc
gttctgctggatagcaaccccctacagagtccacctgcccaggtaaggtg
cagcctgggtggaccctgaggacagtggtgctgtgaggtagcatgggagg
atccaacagggcttggggagccacctcttctcttgcatgtgcccctcaca
gatatgcctgaaggggaaacttcacatcttcaagtacctaacaatggaag
ctggccggaggggagccgccctcggggacctggtcccttcccgcccccca
agttttagtccttggtaaggcccagaggaaggaatccccttcttgggacc
aaagaactcccctggattccagtgggagggtaggggtgccgccagcctgg
ggctgaccgggtcttcctggctgctccagccctgccgaagatttatttcc
gggacgtcgttatgatggtggcctggactcaggcttccacagcgttgaca
gtggcagcaagaggtggtcaggaaatgaggtaaggacctcctttgcaagg
gcatttggggatgtcattgggactgggactggggactctatacctaacag
gtttagtatctcggtaagaggtcatgcctcgggctccttcccctactatc
cccaagaggcaggccctccacttgatcccagtctctactgtgcagcctga
acccatatggtccccagccctgcagggagcccatgtcccatctctgcctc
tctgcccttaaagtccaccagatgatttttcagagctgtcttttcccgga
tctcggagctgggttcgtgaatccccggggggcctaga
gaattctctctcctcccctgtatgtcctttacaacatcctgccaggttcc
ccttttattgttttggcagctgatgaatggggtgtcaaggattctggcaa
aaggccctgatgtttggggaaagaggtgtttccaagatgcagttctctgt
ctgtccagactgcagccccaaccacctggtcttgcacacatcgcttccaa
gccagctctggctccacccccagccccagctttgtgcaatgaggaaagaa
ggtaggactggaaatgtggccccagggaggttagaaccccgtaaggcgta
ctctgagctgcttatccacacctgccatctgtggaattgtagaaatgggc
gcctcagagagatgcccggggaaggcaggatgtgatcatgcgtgtaaccc
cagccagggagatcacaagttcacagctagccttggctgtaagagagact
ctgtcagagggtgcctagcatgcatgagactctgggttccatctccagca
cttcataaaaccagttgtggtggtgtacacctgtaatctcagtaccccag
agatggaggcagtagacttagtagttcacagtaattgctttgtacatagg
atgttgggggccaacctggatccatgagagcttttgtttaaaagaaaata
gctgggcagtggtggtgctgcacacctttagtcccagcacttgggatgca
gaggcagttggatctctgagttcaaggcctgcctaatctaatctacttta
ctttttttattttgtgtgtatgcttgtgtgcctgagtgcatatatgtgca
ccacatgcctgcaggtgccctttcaaagacagagagagagagactatcgg
atttccctgggaaccagagttgcaggcagtaagcttgcctgatgtgggtg
ctggaaaagcgaatcttgtgtccttcttgctagaggagtgtattagtagt
tgaaacagatgccattaatcaagcaacttctcattaaaggctcaacattt
tcattggggcctggcttacttggttcagaagttcagttccagatatcatc
tatggtatggatactatggcagcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_138077912_138078841
seq2: B6Ng01-207L01.b_42_979

seq1  GAATTCAAGGCCTTCGCCTGGGCATCTCCTAACTCTCCCTGTGCCCCGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCCTTCGCCTGGGCATCTCCTAACTCTCCCTGTGCCCCGAC  50

seq1  TGTAGAGCTGGGAGACCTTCCTCTGGTCCGCCTGGATTTCTCCTGTAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAGCTGGGAGACCTTCCTCTGGTCCGCCTGGATTTCTCCTGTAACC  100

seq1  GCATCTCCCGAATCCCCGTCTCCTTCTGCCGCCTCAGGCACCTGCAGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTCCCGAATCCCCGTCTCCTTCTGCCGCCTCAGGCACCTGCAGGTC  150

seq1  GTTCTGCTGGATAGCAACCCCCTACAGAGTCCACCTGCCCAGGTAAGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGCTGGATAGCAACCCCCTACAGAGTCCACCTGCCCAGGTAAGGTG  200

seq1  CAGCCTGGGTGGACCCTGAGGACAGTGGTGCTGTGAGGTAGCATGGGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGGGTGGACCCTGAGGACAGTGGTGCTGTGAGGTAGCATGGGAGG  250

seq1  ATCCAACAGGGCTTGGGGAGCCACCTCTTCTCTTGCATGTGCCCCTCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAACAGGGCTTGGGGAGCCACCTCTTCTCTTGCATGTGCCCCTCACA  300

seq1  GATATGCCTGAAGGGGAAACTTCACATCTTCAAGTACCTAACAATGGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGCCTGAAGGGGAAACTTCACATCTTCAAGTACCTAACAATGGAAG  350

seq1  CTGGCCGGAGGGGAGCCGCCCTCGGGGACCTGGTCCCTTCCCGCCCCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCGGAGGGGAGCCGCCCTCGGGGACCTGGTCCCTTCCCGCCCCCCA  400

seq1  AGTTTTAGTCCTTGGTAAGGCCCAGAGGAAGGAATCCCCTTCTTGGGACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTAGTCCTTGGTAAGGCCCAGAGGAAGGAATCCCCTTCTTGGGACC  450

seq1  AAAGAACTCCCCTGGATTCCAGTGGGAGGGTAGGGGTGCCGCCAGCCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACTCCCCTGGATTCCAGTGGGAGGGTAGGGGTGCCGCCAGCCTGG  500

seq1  GGCTGACCGGGTCTTCCTGGCTGCTCCAGCCCTGCCGAAGATTTATTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGACCGGGTCTTCCTGGCTGCTCCAGCCCTGCCGAAGATTTATTTCC  550

seq1  GGGACGTCGTTATGATGGTGGCCTGGACTCAGGCTTCCACAGCGTTGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACGTCGTTATGATGGTGGCCTGGACTCAGGCTTCCACAGCGTTGACA  600

seq1  GTGGCAGCAAGAGGTGGTCAGGAAATGAGGTAAGGACCTCCTTTGCAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAGCAAGAGGTGGTCAGGAAATGAGGTAAGGACCTCCTTTGCAAGG  650

seq1  GCATTTGGGGATGTCATTGGGACTGGGACTGGGGACTCTATACCTAACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTGGGGATGTCATTGGGACTGGGACTGGGGACTCTATACCTAACAG  700

seq1  G-TTAGTATCTCGGTAAGAGGTCATGCCTCGGGCTCCTTCCCCTACTATC  749
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGTATCTCGGTAAGAGGTCATGCCTCGGGCTCCTTCCCCTACTATC  750

seq1  CCCAAGAGGCAGGCCCTCCACTTGATCCCAGTCTCTACTGTGCAGCCTGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGAGGCAGGCCCTCCACTTGATCCCAGTCTCTACTGTGCAGCCTGA  800

seq1  ACCCATATGGTCCCCAGCCCTGCAGGGAGCCCATGTCCCATCTCTGCCTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATATGGTCCCCAGCCCTGCAGGGAGCCCATGTCCCATCTCTGCCTC  850

seq1  TCTG-CCTTAAAGTCCA-CAGATGATTTTTCAGAGCTGTCTTT--CCGGA  895
      |||| |||||||||||| |||||||||||||||||||||||||  |||||
seq2  TCTGCCCTTAAAGTCCACCAGATGATTTTTCAGAGCTGTCTTTTCCCGGA  900

seq1  TCTCGGAGCT-GGCTCGTG-ATCCCC-GGGGGCCTAGA  930
      |||||||||| || ||||| |||||| |||||||||||
seq2  TCTCGGAGCTGGGTTCGTGAATCCCCGGGGGGCCTAGA  938