BAC Information

Click to search

BAC

Clone NameB6Ng01-207O14
Chromosome5 (Build37)
Map Location 132,517,297 - 132,681,529
singlet/doubletdoublet
Overlap geneAuts2
Upstream geneWbscr17, 4930563F08Rik
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-207O14.bB6Ng01-207O14.g
ACCGA026933GA026934
length1,088891
definitionB6Ng01-207O14.b B6Ng01-207O14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(132,517,297 - 132,518,379)(132,680,647 - 132,681,529)
sequence
gaattcctcctgaacgctttctagctagggtaccattttcaattgatttg
agaagtaagcaaaaactttctgagtttgacacatgccaaccttcccaggg
ccctggttaccagctgtagatcttgaggtttctctgtttctatcctgtga
ataaactcattctgtatgagaaaaaaaaatgtttggtggtactggaattg
ttgcatctgagtctctgggggattgcacattaatataatgatcctatctg
aatacagatctctgtgctatttgtaacagatgcttatgatctgttatccc
aggctttgctccacgtacttaaattttcaagttcaatccccaagttttga
caacttcctcaattataaaattttgcataaatcagaagcaatatttcccc
cttgaataactcctcatgaatatttatatattcagatatttcccttaact
ttttcctttgtgactaatctaaatgggttatgatgtctccttgatgaaga
caatctcaaagtcctgtggccaattacattctcgctggccacatggcttg
gggaatacctaatatagtagaaaacccaagctcactgggttgttaaagct
ttgcacacgagtcagatcttctgactacatcaagtttgttttgttttgtt
ttgtttttcccttattcttttttgcctgctgaatttaaaacagcaaagct
agaacaataagatgccttgattagcatcacttgagactaagcttccattg
tctacgtatctacaaataacaccatatgagtgtgaaagactgaagggaat
ttttatctcagttgaaaattctgtagtgagaattgctgactaataggcac
aaaatatacttccaaattaatgatactaaaaagaaaaaaaaacaatatgc
aaagagctgagggtttttttttttggggggggggggacatgccatcaggc
cacaggggtgtagactgacattatctgagaggaagaaaggtaagttcact
ggtgttctaggagcatggctcagtatggaagaatgtctgctatctatgac
aaagtcctggagttccaaaatggaacagtataaaccag

gaattctcaaaagtcagatgagctcagaccttccttacaaacctttgcaa
ggcctgtttcagcatctgtggctcataaggtgtgttaatgaattcttatt
ttcttacagcaaagaagtcttagatatggtggtttgaatgagaaatagcc
cctatatgctcatgtattttaatatttatggaacatttattaaatggagc
cttgctgaagtatgccactggtttcgagggttttatgggttcaccctact
cctcccctttatgtggattcaaatgttatcggccagttttcggcttatgc
agccatgccatgctttccccacctagatgcactctgtccctctggaacgg
taggccaaaataatctctcttctttacattgattttgttcatggtattgt
gtcacagcagcaggaaggcaatgaatacacacagcttactggttaagaac
acttggttctcttacaaaagatcagattttggcttctagcaccgagatgt
ggtgctcagagctatatgtaatttcagttacatggaatgaacccccctct
cccccccacacacacacacacggggagggggagggagagagacagagaaa
aagagagaacaaataatcctttttagcaaagagtacgaatgatgtctaaa
tactccttctgggagacaacttggagtaaaatagtgtaagcacctggcaa
aaagcaaacacagctaaagcggcagttctgggtttacttgtgttaaactg
taaatacattctaccctgcagtttttctatgggtatagttgtatcacaaa
tctacccccatagccccctgacattttcctattgggtgaccagtctttaa
gaagcaataataaatctaattgtgggcaagctagcttccca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_132517297_132518379
seq2: B6Ng01-207O14.b_49_1136

seq1  GAATTCCTCCTGAACGCTTTCTAGCTAGGGTACCATTTTCAATTGATTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCTGAACGCTTTCTAGCTAGGGTACCATTTTCAATTGATTTG  50

seq1  AGAAGTAAGCAAAAACTTTCTGAGTTTGACACATGCCAACCTTCCCAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTAAGCAAAAACTTTCTGAGTTTGACACATGCCAACCTTCCCAGGG  100

seq1  CCCTGGTTACCAGCTGTAGATCTTGAGGTTTCTCTGTTTCTATCCTGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGTTACCAGCTGTAGATCTTGAGGTTTCTCTGTTTCTATCCTGTGA  150

seq1  ATAAACTCATTCTGTATGAGAAAAAAAAATGTTTGGTGGTACTGGAATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACTCATTCTGTATGAGAAAAAAAAATGTTTGGTGGTACTGGAATTG  200

seq1  TTGCATCTGAGTCTCTGGGGGATTGCACATTAATATAATGATCCTATCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATCTGAGTCTCTGGGGGATTGCACATTAATATAATGATCCTATCTG  250

seq1  AATACAGATCTCTGTGCTATTTGTAACAGATGCTTATGATCTGTTATCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAGATCTCTGTGCTATTTGTAACAGATGCTTATGATCTGTTATCCC  300

seq1  AGGCTTTGCTCCACGTACTTAAATTTTCAAGTTCAATCCCCAAGTTTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTTGCTCCACGTACTTAAATTTTCAAGTTCAATCCCCAAGTTTTGA  350

seq1  CAACTTCCTCAATTATAAAATTTTGCATAAATCAGAAGCAATATTTCCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTCCTCAATTATAAAATTTTGCATAAATCAGAAGCAATATTTCCCC  400

seq1  CTTGAATAACTCCTCATGAATATTTATATATTCAGATATTTCCCTTAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAATAACTCCTCATGAATATTTATATATTCAGATATTTCCCTTAACT  450

seq1  TTTTCCTTTGTGACTAATCTAAATGGGTTATGATGTCTCCTTGATGAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTTTGTGACTAATCTAAATGGGTTATGATGTCTCCTTGATGAAGA  500

seq1  CAATCTCAAAGTCCTGTGGCCAATTACATTCTCGCTGGCCACATGGCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTCAAAGTCCTGTGGCCAATTACATTCTCGCTGGCCACATGGCTTG  550

seq1  GGGAATACCTAATATAGTAGAAAACCCAAGCTCACTGGGTTGTTAAAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATACCTAATATAGTAGAAAACCCAAGCTCACTGGGTTGTTAAAGCT  600

seq1  TTGCACACGAGTCAGATCTTCTGACTACATCAAGTTTGTTTTGTTTTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACACGAGTCAGATCTTCTGACTACATCAAGTTTGTTTTGTTTTGTT  650

seq1  TTGTTTTTCCCTTATTCTTTTTTGCCTGCTGAATTTAAAACAGCAAAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTCCCTTATTCTTTTTTGCCTGCTGAATTTAAAACAGCAAAGCT  700

seq1  AGAACAATAAGATGCCTTGATTAGCATCACTTGAGACTAAGCTTCCATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAATAAGATGCCTTGATTAGCATCACTTGAGACTAAGCTTCCATTG  750

seq1  TCTACGTATCTACAAATAACACCATATGAGTGTGAAAGACTGAAGGGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACGTATCTACAAATAACACCATATGAGTGTGAAAGACTGAAGGGAAT  800

seq1  TTTTATCTCAGTTGAAAATTCTGTAGTGAGAATTGCTGACTAATAGGCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCTCAGTTGAAAATTCTGTAGTGAGAATTGCTGACTAATAGGCAC  850

seq1  AAAATATACTTCCAAATTAATGATACTAAAAAGAAAAAAAAACAATATGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATACTTCCAAATTAATGATACTAAAAAGAAAAAAAAACAATATGC  900

seq1  AAAGAGCTGAGGGTTTTTTTTTT---GGGGGGGGGGACATGCCATCAGGC  947
      |||||||||||||||||||||||   ||||||||||||||||||||||||
seq2  AAAGAGCTGAGGGTTTTTTTTTTTGGGGGGGGGGGGACATGCCATCAGGC  950

seq1  AACAGGGGTGTAGACTGACATTATCTGAGA-GAAGAAAGGTTAAGTTCCA  996
       ||||||||||||||||||||||||||||| ||||||||| |||||| ||
seq2  CACAGGGGTGTAGACTGACATTATCTGAGAGGAAGAAAGG-TAAGTT-CA  998

seq1  CTGG-GGTCTAGGAGCATGGCTCAGTA-GGAAGAATGTCTGCCTATC-AT  1043
      |||| | |||||||||||||||||||| ||||||||||||| ||||| ||
seq2  CTGGTGTTCTAGGAGCATGGCTCAGTATGGAAGAATGTCTG-CTATCTAT  1047

seq1  GAACAAAGCCCT-GAGTTCCAAAAAGG-ACAGTATAAACCAG  1083
      | |||||| ||| ||||||||||| || ||||||||||||||
seq2  G-ACAAAGTCCTGGAGTTCCAAAATGGAACAGTATAAACCAG  1088


seq1: chr5_132680647_132681529
seq2: B6Ng01-207O14.g_66_956 (reverse)

seq1  TGGG-AGCTAGCTTG-CCACAATAGG--TTATTTTTGC-TCTAAAAGACT  45
      |||| |||||||||| |||||||  |  ||||| |||| ||| |||||||
seq2  TGGGAAGCTAGCTTGCCCACAATTAGATTTATTATTGCTTCTTAAAGACT  50

seq1  GGTCACCCAATGGGAAAATGTCA-GGGGCTAT-GGGGTAGATTTGTGATA  93
      ||||||||||| ||||||||||| |||||||| |||||||||||||||||
seq2  GGTCACCCAATAGGAAAATGTCAGGGGGCTATGGGGGTAGATTTGTGATA  100

seq1  CAACTATACCCATAGAAAAACTGCAAGGTAGAATGTATTTACAGTTTAAC  143
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CAACTATACCCATAGAAAAACTGCAGGGTAGAATGTATTTACAGTTTAAC  150

seq1  ACAAGTAAA-CCAGAACTGCCGCTTTTGCTGTGTTTTGCTTTTTGCCAGG  192
      ||||||||| |||||||||||||||| |||||| ||||||||||||||||
seq2  ACAAGTAAACCCAGAACTGCCGCTTTAGCTGTG-TTTGCTTTTTGCCAGG  199

seq1  TGCTTACACTATTTTACTCC-AGTTGTCTCCCAGAAGGAGTATTTAGACA  241
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGCTTACACTATTTTACTCCAAGTTGTCTCCCAGAAGGAGTATTTAGACA  249

seq1  TCATTCGTACTCTTTGCTAAAAAGGATTATTTGTTCTCTCTTTTTCTCTG  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCGTACTCTTTGCTAAAAAGGATTATTTGTTCTCTCTTTTTCTCTG  299

seq1  TCTCTCTCCCTCCCCCTCCCCGTGTGTGTGTGTGTGGGGGGGAGAGGGGG  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCCCTCCCCCTCCCCGTGTGTGTGTGTGTGGGGGGGAGAGGGGG  349

seq1  GTTCATTCCATGTAACTGAAATTACATATAGCTCTGAGCACCACATCTCG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTCCATGTAACTGAAATTACATATAGCTCTGAGCACCACATCTCG  399

seq1  GTGCTAGAAGCCAAAATCTGATCTTTTGTAAGAGAACCAAGTGTTCTTAA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTAGAAGCCAAAATCTGATCTTTTGTAAGAGAACCAAGTGTTCTTAA  449

seq1  CCAGTAAGCTGTGTGTATTCATTGCCTTCCTGCTGCTGTGACACAATACC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTAAGCTGTGTGTATTCATTGCCTTCCTGCTGCTGTGACACAATACC  499

seq1  ATGAACAAAATCAATGTAAAGAAGAGAGATTATTTTGGCCTACCGTTCCA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACAAAATCAATGTAAAGAAGAGAGATTATTTTGGCCTACCGTTCCA  549

seq1  GAGGGACAGAGTGCATCTAGGTGGGGAAAGCATGGCATGGCTGCATAAGC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGACAGAGTGCATCTAGGTGGGGAAAGCATGGCATGGCTGCATAAGC  599

seq1  CGAAAACTGGCCGATAACATTTGAATCCACATAAAGGGGAGGAGTAGGGT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAAACTGGCCGATAACATTTGAATCCACATAAAGGGGAGGAGTAGGGT  649

seq1  GAACCCATAAAACCCTCGAAACCAGTGGCATACTTCAGCAAGGCTCCATT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCATAAAACCCTCGAAACCAGTGGCATACTTCAGCAAGGCTCCATT  699

seq1  TAATAAATGTTCCATAAATATTAAAATACATGAGCATATAGGGGCTATTT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAATGTTCCATAAATATTAAAATACATGAGCATATAGGGGCTATTT  749

seq1  CTCATTCAAACCACCATATCTAAGACTTCTTTGCTGTAAGAAAATAAGAA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTCAAACCACCATATCTAAGACTTCTTTGCTGTAAGAAAATAAGAA  799

seq1  TTCATTAACACACCTTATGAGCCACAGATGCTGAAACAGGCCTTGCAAAG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTAACACACCTTATGAGCCACAGATGCTGAAACAGGCCTTGCAAAG  849

seq1  GTTTGTAAGGAAGGTCTGAGCTCATCTGACTTTTGAGAATTC  883
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTAAGGAAGGTCTGAGCTCATCTGACTTTTGAGAATTC  891


| Home | SequenceCutter | Blast | Download |