BAC Information

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BAC

Clone NameB6Ng01-208B02
Chromosome5 (Build37)
Map Location 48,133,167 - 48,134,255
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040865
Downstream geneLOC100040876, Slit2, 4933428G09Rik, Kcnip4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208B02.bB6Ng01-208B02.g
ACCGA027047GA027048
length9261,080
definitionB6Ng01-208B02.b B6Ng01-208B02.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttcttggaggattttacctttgatgagtatgaagtgaccctcct
tgtcttttttgataactttgtgttggaagtcaattttattcgatattaga
atggctactccaacttgtttcgtcagatcatttgcctggaaaattattct
ccagcccttcattctcaggtagtgtctgtctttttccctgagatgggttt
cctgtaagcagcaaaatgttgggtcctgtttgtttattcagtctgttagt
ctatgtctttttattggggaattgagtccattgatattaagagctattaa
gggaaagtaattgttgcttcctacttattttgttgttagagttggcattc
tgttcttgtggctgtcttcttttaggtttggtgaaggattactttcttgc
tttttataggatgtggtttccgttccttgaattggtttttttctgttctt
attttttggagtgctggattcctggaaagataatgtgtgaatttggtttt
gtcatggaatactttggtttctccatctatggtaattgaaagtttggctg
ggtatagtagcctgggtgggcatttgtgttctcttagtgtctgtataaca
tctgtccaggatcttctggcttttataatgtctgatgaaaagtctggtgt
aattctaataggcctgcctttatatgttacttgacccttttctcttactg
ctttttaatattctctttatttagtgcatttggtgttctgattattatgt
gtcaggaggaatttcttttctggtacagtctatttaaagttctctaggct
tcttgtatgttcatgggcatctctttctttatgtttgggaagttttcttc
tattattttgtgaagatatttgctgggccctttaagttgaaaatcttcat
tctcatcaactcctattatcctaggt

gaattctcattcacaagtgatgagacacagaaggtgtaggaggggtgctg
gaaccaaggcagaagtgattcctaaagtatttttctgcaaagaaaatgaa
ggacacatacatttgcataatctagattggtgagaattgtgttagagtac
atacaagttcagaaatttaagtgggacaactcttaagttctatattctcc
ttctcaaatgagggtgtttgcattgatgatacactctggaatactcctgg
ctgttctgtcttttccagcacatgccacgaaagtgggtggttgagaaagg
attccttatctatttgaaaagtgggcaccaagacaggtgagagtcatgta
caagaacatgaacgactttttagttcgtgcaaatacaagcaaatttaatt
tatacgtgcaagaagtaaaaatttcaacagcttcaaaaatttttctacct
ttcacagagaatggtaatatacaattcataatctattgtgtacttaagca
tgatcaaggtcactgtaggaggcctgacagcaatagacttgataccttcc
ttgtttagaatggagtctgctttgttgctcttggaatatttgctgacatg
ctgatcttaatctttcacaatataaataaatgcatactgactatggtgat
ctcttaagtgtctcatgcaagattatgagttgtaaaataaacaaaatacc
tcagaacaggtaaatcatttaggatagatgaaggccttttaaatcaacaa
gtcactgctctatcctaaggtgttggcacaatagtgatttctcatctcca
gaggaggttagcactgcacagctggtcacctctgcctcacattccctgac
ctcaggatgcattgtgttgtagctggcatgtttgtactgttaattccatg
gcagaatgtggtcttatcacgtttcatatggactcttaaaactcgaactg
acagatatcactttcaattgacattctgtcgccaaaatgagctgtatgga
tgcttccacatagtttctatgacactttgagacacattattatgtgctct
ctaacaagaatatcttgctttctatgagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_48133167_48134255
seq2: B6Ng01-208B02.g_66_1145 (reverse)

seq1  TACTCATAGAAAGCAAGATATTCTTTGTTTAGAAGAGCCACCATTAATAA  50
      |||||||||||||||||||||||||   |||| |||| |||   ||||||
seq2  TACTCATAGAAAGCAAGATATTCTT--GTTAG-AGAG-CAC--ATAATAA  44

seq1  TGTTGTCTCAAAGTGTCATTAAGAAACTATGTGGAAGCATCCATACAGCT  100
      || ||||||||||||||||  |||||||||||||||||||||||||||||
seq2  TG-TGTCTCAAAGTGTCAT--AGAAACTATGTGGAAGCATCCATACAGCT  91

seq1  CATTTTGGCGACAGAATGTCAA-TGGAAGTGATATCTGTCAGTTCGAGTT  149
      |||||||||||||||||||||| || ||||||||||||||||||||||||
seq2  CATTTTGGCGACAGAATGTCAATTGAAAGTGATATCTGTCAGTTCGAGTT  141

seq1  TTAAGAGTCCATATGAAACGTGATAAGACCACATTCTGCCATGGAATTAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAGTCCATATGAAACGTGATAAGACCACATTCTGCCATGGAATTAA  191

seq1  CAGTACAAACATGCCAGCTACAACACAATGCATCCCTGAGGTCAGGGAAT  249
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CAGTACAAACATGCCAGCTACAACACAATGCAT-CCTGAGGTCAGGGAAT  240

seq1  GTGAGGCAGAGGTGACCAGCTGTGCAGTGCTAACCTCCTCTGGAGATGAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGCAGAGGTGACCAGCTGTGCAGTGCTAACCTCCTCTGGAGATGAG  290

seq1  AAATCACTATTGTGCCAACACCTTAGGATAGAGCAGTGACTTGTTGATTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCACTATTGTGCCAACACCTTAGGATAGAGCAGTGACTTGTTGATTT  340

seq1  AAAAGGCCTTCATCTATCCTAAATGATTTACCTGTTCTGAGGTATTTTGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGCCTTCATCTATCCTAAATGATTTACCTGTTCTGAGGTATTTTGT  390

seq1  TTATTTTACAACTCATAATCTTGCATGAGACACTTAAGAGATCACCATAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTACAACTCATAATCTTGCATGAGACACTTAAGAGATCACCATAG  440

seq1  TCAGTATGCATTTATTTATATTGTGAAAGATTAAGATCAGCATGTCAGCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTATGCATTTATTTATATTGTGAAAGATTAAGATCAGCATGTCAGCA  490

seq1  AATATTCCAAGAGCAACAAAGCAGACTCCATTCTAAACAAGGAAGGTATC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCCAAGAGCAACAAAGCAGACTCCATTCTAAACAAGGAAGGTATC  540

seq1  AAGTCTATTGCTGTCAGGCCTCCTACAGTGACCTTGATCATGCTTAAGTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTATTGCTGTCAGGCCTCCTACAGTGACCTTGATCATGCTTAAGTA  590

seq1  CACAATAGATTATGAATTGTATATTACCATTCTCTGTGAAAGGTAGAAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATAGATTATGAATTGTATATTACCATTCTCTGTGAAAGGTAGAAAA  640

seq1  ATTTTTGAAGCTGTTGAAATTTTTACTTCTTGCACGTATAAATTAAATTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGAAGCTGTTGAAATTTTTACTTCTTGCACGTATAAATTAAATTT  690

seq1  GCTTGTATTTGCACGAACTAAAAAGTCGTTCATGTTCTTGTACATGACTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTATTTGCACGAACTAAAAAGTCGTTCATGTTCTTGTACATGACTC  740

seq1  TCACCTGTCTTGGTGCCCACTTTTCAAATAGATAAGGAATCCTTTCTCAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTGTCTTGGTGCCCACTTTTCAAATAGATAAGGAATCCTTTCTCAA  790

seq1  CCACCCACTTTCGTGGCATGTGCTGGAAAAGACAGAACAGCCAGGAGTAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCACTTTCGTGGCATGTGCTGGAAAAGACAGAACAGCCAGGAGTAT  840

seq1  TCCAGAGTGTATCATCAATGCAAACACCCTCATTTGAGAAGGAGAATATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGTGTATCATCAATGCAAACACCCTCATTTGAGAAGGAGAATATA  890

seq1  GAACTTAAGAGTTGTCCCACTTAAATTTCTGAACTTGTATGTACTCTAAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTAAGAGTTGTCCCACTTAAATTTCTGAACTTGTATGTACTCTAAC  940

seq1  ACAATTCTCACCAATCTAGATTATGCAAATGTATGTGTCCTTCATTTTCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTCTCACCAATCTAGATTATGCAAATGTATGTGTCCTTCATTTTCT  990

seq1  TTGCAGAAAAATACTTTAGGAATCACTTCTGCCTTGGTTCCAGCACCCCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGAAAAATACTTTAGGAATCACTTCTGCCTTGGTTCCAGCACCCCT  1040

seq1  CCTACACCTTCTGTGTCTCATCACTTGTGAATGAGAATTC  1089
      ||||||||||||||||||||||||||||||||||||||||
seq2  CCTACACCTTCTGTGTCTCATCACTTGTGAATGAGAATTC  1080


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