BAC Information

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BAC

Clone NameB6Ng01-208G13
Chromosome5 (Build37)
Map Location 83,259,616 - 83,260,691
singlet/doubletsinglet
Overlap genenone
Upstream geneEG433912
Downstream geneLOC100039434, Srd5a2l2, LOC100039608
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208G13.bB6Ng01-208G13.g
ACCGA027298GA027299
length1,118928
definitionB6Ng01-208G13.b B6Ng01-208G13.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatttatccaagcatctgatacttaataaagatcatacaaaccac
acccaagaaagacagcattcaaatgatacagagaaaccttaatatacaca
gtatagaagtctgaaaataaaccccgatctatcatccagaacaaacaaag
actgcaaatgaatcagattcactgtgagacatgcaatgcttatattgaaa
aaaatgttgatggcaagtttcaagatatagatttagtaagaacgttctga
ataggaaagaatgagcccatcaattaagcccaacaattaacaaatggtac
atcttttctctttgtacataagataggaatttcatgtacagaatgtataa
aaaacaaaaaacacaaaaagtcaagaaaatgagtgactggattttaaaaa
taaactctggatgtgagcatagatttctcatcagataaagaaatagtgta
ataagtatttcgaaaaaacattcatcacaaaacaaaaatggatactgttt
tattttttatcattatgtaattcatctttgagacgcattttgccttattt
ctagcttcaatgttttggttaaggtacatacatttatttttctattttct
attttctagctcactgactccagcttttagctcttagaagatcctgaaca
gatgtcataaggacactaagagagcacaaatgccagcccaggctactata
cccagcaaaactctcaattaccatagaaggagaaaccaaagtattccatg
acaaaaccaaatttacataatacctttccaggaatccaacccttcaaagc
ataataattggaaaacaccaatacaaggacaaaaaatactctctagaaaa
accaagaaattaatccttcaacaacctaaagaagacagtcacaagaacaa
aatctcaactctaacaacaaaataacaggagtaacaattacttttcctta
atatctctgaatatcaatggactcaattccccaataaaagacaagactaa
agattggctacacaaacaggtcacatttgctgctaacaggaaacccatgt
caaggaaaaagacagagtgaaaggctggaaaacacttgagcaacagtctg
aagaaacagttagagtat
gaattcaatttgcgagatattattgagtatttttgtatgtatattcctaa
gggaaattggtctgaagttctccttctttgtagggtctttgtgtggtttt
ggtatcagctgaattgcagcttcatagataaattgagtagtgatccttct
gtttctattttgtggaacagtttgaagagtattggtattaggtcttctga
ttctgcattaaacccatctggtcccgggatagttttggttgggaggcttt
tgatgactgcgtctatttctttagggtttaagggactttttagatggttt
atctgatcctgatttttttttttttttgttacttggtaattgctagaaaa
ttgtccatttctttcagctttccagttgtgttgggtataggcttttatag
taggctctgctgatattttaaaaaattatctaactttctgttgttttatc
tccattttccgttctgattttgttaatttggatactgcctctgtgccctc
cggttagtctggctaagggtttatttatcttgttgattttctcaaagaac
catctcctggttttgttgattctttttttttaaatatttttattaggtat
tttcctcatttacatttcccatgctatcccaaaagtccccctgtaccctc
ctcccctcccctaccaacccactacccctttttggccctggtgttcccct
gtactggggcatataaagtttgcaagtccaaagggcctctctttccagtg
atagccgactgggccatcttttgctacatatgcagctagagtcaaaaagc
tccgggtattggttagtcataatgttgtccacctatagggtgcagatccc
tttaacttcttggtactttctctagtcctcccatgggggccctgagatcc
atcaatagctggactgggacatccactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_83259616_83260691
seq2: B6Ng01-208G13.b_107_1166 (reverse)

seq1  ATACTCTAACTTGTTTCTTCAGACTGTTTCCTTGGAAAATTGTTTTCCAG  50
      |||||||||| |||||||||||||||     |||   || ||||||||||
seq2  ATACTCTAAC-TGTTTCTTCAGACTG-----TTGCTCAAGTGTTTTCCAG  44

seq1  CCTTTCACTCTGTCTTTTTCCTTGACATGGGTTTCCTGTAAGCAGCAAAA  100
      ||||||||||||||||||||||||||||||||||||||| |||||| |||
seq2  CCTTTCACTCTGTCTTTTTCCTTGACATGGGTTTCCTGTTAGCAGC-AAA  93

seq1  TGTTGGACCCTGTTTGTGTAGCCAATCTTTTAGTCTTTGTCTTTTTATTG  150
      |||  || ||||||||||||||||||| ||||||| ||||| ||||||||
seq2  TGT--GA-CCTGTTTGTGTAGCCAATC-TTTAGTC-TTGTC-TTTTATTG  137

seq1  GGGAATTGAGTCCATTGATATTCAGAGATATTAAGGAAAAGTAATTGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATTGAGTCCATTGATATTCAGAGATATTAAGGAAAAGTAATTGTTA  187

seq1  CTCCCTGTTATTTTTGTTGTTAGAGTTGAGATTTTGTTCTTGTGACTGTC  250
      || ||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CT-CCTGTTA-TTTTGTTGTTAGAGTTGAGATTTTGTTCTTGTGACTGTC  235

seq1  TTCTTTAGGTTTGTTGAAGGATTAATTTCTTGGTTTTTCTAGAGAGTATT  300
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTAGG-TTGTTGAAGGATTAATTTCTTGGTTTTTCTAGAGAGTATT  284

seq1  TTTTGTCCTTGTATTGGTGTTTTCCAATTATTATGCTTTGAAGGGTTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCCTTGTATTGGTGTTTTCCAATTATTATGCTTTGAAGGGTTGGA  334

seq1  TTCCTGGAAAGGTATTATGTAAATTTGGTTTTGTCATGGAATACTTTGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGAAAGGTATTATGTAAATTTGGTTTTGTCATGGAATACTTTGGT  384

seq1  TTCTCCTTCTATGGTAATTGAGAGTTTTGCTGGGTATAGTAGCCTGGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTTCTATGGTAATTGAGAGTTTTGCTGGGTATAGTAGCCTGGGCT  434

seq1  GGCATTTGTGCTCTCTTAGTGTCCTTATGACATCTGTTCAGGATCTTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTTGTGCTCTCTTAGTGTCCTTATGACATCTGTTCAGGATCTTCTA  484

seq1  AGAGCTAAAAGCTGGAGTCAGTGAGCTAGAAAATAGAAAATAGAAAAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTAAAAGCTGGAGTCAGTGAGCTAGAAAATAGAAAATAGAAAAATA  534

seq1  AATGTATGTACCTTAACCAAAACATTGAAGCTAGAAATAAGGCAAAATGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATGTACCTTAACCAAAACATTGAAGCTAGAAATAAGGCAAAATGC  584

seq1  GTCTCAAAGATGAATTACATAATGATAAAAAATAAAACAGTATCCATTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAAAGATGAATTACATAATGATAAAAAATAAAACAGTATCCATTTT  634

seq1  TGTTTTGTGATGAATGTTTTTTCGAAATACTTATTACACTATTTCTTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTGATGAATGTTTTTTCGAAATACTTATTACACTATTTCTTTAT  684

seq1  CTGATGAGAAATCTATGCTCACATCCAGAGTTTATTTTTAAAATCCAGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGAGAAATCTATGCTCACATCCAGAGTTTATTTTTAAAATCCAGTC  734

seq1  ACTCATTTTCTTGACTTTTTGTGTTTTTTGTTTTTTATACATTCTGTACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATTTTCTTGACTTTTTGTGTTTTTTGTTTTTTATACATTCTGTACA  784

seq1  TGAAATTCCTATCTTATGTACAAAGAGAAAAGATGTACCATTTGTTAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTCCTATCTTATGTACAAAGAGAAAAGATGTACCATTTGTTAATT  834

seq1  GTTGGGCTTAATTGATGGGCTCATTCTTTCCTATTCAGAACGTTCTTACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGCTTAATTGATGGGCTCATTCTTTCCTATTCAGAACGTTCTTACT  884

seq1  AAATCTATATCTTGAAACTTGCCATCAACATTTTTTTCAATATAAGCATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTATATCTTGAAACTTGCCATCAACATTTTTTTCAATATAAGCATT  934

seq1  GCATGTCTCACAGTGAATCTGATTCATTTGCAGTCTTTGTTTGTTCTGGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTCTCACAGTGAATCTGATTCATTTGCAGTCTTTGTTTGTTCTGGA  984

seq1  TGATAGATCGGGGTTTATTTTCAGACTTCTATACTGTGTATATTAAGGTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGATCGGGGTTTATTTTCAGACTTCTATACTGTGTATATTAAGGTT  1034

seq1  TCTCTGTATCATTTGAATGCTGTCTT  1076
      ||||||||||||||||||||||||||
seq2  TCTCTGTATCATTTGAATGCTGTCTT  1060