BAC Information

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BAC

Clone NameB6Ng01-208I23
Chromosome5 (Build37)
Map Location 11,362,954 - 11,364,101
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041395, EG625586, LOC242809, LOC623849, LOC100041408, LOC667880, EG667888, EG667901, EG667907, LOC667916, LOC100041472, EG545728, LOC100042819, LOC667942, LOC667948, EG667949, Speer1-ps1, EG667956
Downstream geneLOC667961, EG667967, LOC100042858, LOC667974, EG667986, EG623898, EG668001, LOC668008, EG668011, LOC668017, EG668021, LOC623998, EG668043, LOC545732, LOC384144, LOC100041626, EG668059
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208I23.bB6Ng01-208I23.g
ACCGA027408GA027409
length1,1611,144
definitionB6Ng01-208I23.b B6Ng01-208I23.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattaggccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttatcaattctcgatcttacagagcaagccattgctgtt
ctgttcaggaatttttcccctgtacccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaggt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtgccatgcagtgtttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctaggttttttgttatttcagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagagacttgaagttttatcatac
agatcttttacttccttagttagagtcacgccgagatattttatatattt
gtgactattgagaagggtgttgtttccctaatttctttctcagcctgttt
attcattgtgagaagaaaggccattgacctgtttgaggtaattttatatt
cagctactttcacccaagctgtttatcagggtaagagttccctgggagaa
ctagtagggtcacttaaattaactaatcaaatcatctgcaaaatggaaat
actgagaccct
gaattctacaggaatgttggggaaattggggaagcgctgagggagtgaaa
atatatgatccaaaaataatatatgaaaaattaataaaaaggtttaaaga
ataaacaagtgagcatgtttctaaatattaattaaagtctttgcatttaa
aacaacagttattcaatttaaaattaaccattttgtctcatccttgtatt
ggtctccttgctgtgttcagctagtacagggtgtaacatagtgccctttt
ctcatacacagactgaaaaatattctgcaaaaatttctttcaagcagtgt
ttgaattgacagagtttggtaaacttaaaatttgtttcctcacagttctt
tgaaactaagttcttgatgtgtttctctatatattggttctagtagctga
taacttatgtgagaacggaataaagtgcaggttttatttcccctcagtgt
cctggagacgcaggtgtttatgtatcactgcccatatcatagtgttcctg
tgataatgtggtgtcaattggcagctatagaagcaattgtgctctaagag
ttgatttctgatgtctttatcaaaactaggactttacacccatgatagta
ctttttatgatttggcttctccaatgcaaagtaaggggtatctgatttca
tgaaatcaatatagtttgctttaaacagctacaaagtagagatattggct
aagtgtggaaagccttaaacagtgatgggaacaggtgtgtcaggaaataa
aaccaaaaaagagggctaggcaaaaagaatataaataaaatttgatgtgt
tgtataatatttgctatgtgaaagatatgggagattaaaggattaactgg
aggtgagggcagtggacaataagtataataaataatagttgggttaacca
aaacaaagtacacatgaaaaaacttaataggaaccagctaattagtaagc
taatcttcaaaatatgttttaaaagattaaatgagcttgagaacttgttc
tgcattcatgagcctatgcagacacgtttattcatgactatcaccaaggc
gaggcacaagatgcctccctattaatttattcctcagtcatattgaggaa
gctccaaccacacagattacacttctcttatttcttacatatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_11362954_11364101
seq2: B6Ng01-208I23.g_63_1206

seq1  GAATTCTACAGGAATGTTGGGGAAATTGGGGAAGCGCTGAGGGAGTGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACAGGAATGTTGGGGAAATTGGGGAAGCGCTGAGGGAGTGAAA  50

seq1  ATATATGATCCAAAAATAATATATGAAAAATTAATAAAAAGGTTTAAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGATCCAAAAATAATATATGAAAAATTAATAAAAAGGTTTAAAGA  100

seq1  ATAAACAAGTGAGCATGTTTCTAAATATTAATTAAAGTCTTTGCATTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACAAGTGAGCATGTTTCTAAATATTAATTAAAGTCTTTGCATTTAA  150

seq1  AACAACAGTTATTCAATTTAAAATTAACCATTTTGTCTCATCCTTGTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAGTTATTCAATTTAAAATTAACCATTTTGTCTCATCCTTGTATT  200

seq1  GGTCTCCTTGCTGTGTTCAGCTAGTACAGGGTGTAACATAGTGCCCTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCCTTGCTGTGTTCAGCTAGTACAGGGTGTAACATAGTGCCCTTTT  250

seq1  CTCATACACAGACTGAAAAATATTCTGCAAAAATTTCTTTCAAGCAGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATACACAGACTGAAAAATATTCTGCAAAAATTTCTTTCAAGCAGTGT  300

seq1  TTGAATTGACAGAGTTTGGTAAACTTAAAATTTGTTTCCTCACAGTTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTGACAGAGTTTGGTAAACTTAAAATTTGTTTCCTCACAGTTCTT  350

seq1  TGAAACTAAGTTCTTGATGTGTTTCTCTATATATTGGTTCTAGTAGCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTAAGTTCTTGATGTGTTTCTCTATATATTGGTTCTAGTAGCTGA  400

seq1  TAACTTATGTGAGAACGGAATAAAGTGCAGGTTTTATTTCCCCTCAGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTATGTGAGAACGGAATAAAGTGCAGGTTTTATTTCCCCTCAGTGT  450

seq1  CCTGGAGACGCAGGTGTTTATGTATCACTGCCCATATCATAGTGTTCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGACGCAGGTGTTTATGTATCACTGCCCATATCATAGTGTTCCTG  500

seq1  TGATAATGTGGTGTCAATTGGCAGCTATAGAAGCAATTGTGCTCTAAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAATGTGGTGTCAATTGGCAGCTATAGAAGCAATTGTGCTCTAAGAG  550

seq1  TTGATTTCTGATGTCTTTATCAAAACTAGGACTTTACACCCATGATAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTCTGATGTCTTTATCAAAACTAGGACTTTACACCCATGATAGTA  600

seq1  CTTTTTATGATTTGGCTTCTCCAATGCAAAGTAAGGGGTATCTGATTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTATGATTTGGCTTCTCCAATGCAAAGTAAGGGGTATCTGATTTCA  650

seq1  TGAAATCAATATAGTTTGCTTTAAACAGCTACAAAGTAGAGATATTGGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATCAATATAGTTTGCTTTAAACAGCTACAAAGTAGAGATATTGGCT  700

seq1  AAGTGTGGAAAGCCTTAAACAGTGATGGGAACAGGTGTGTCAGGAAATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGGAAAGCCTTAAACAGTGATGGGAACAGGTGTGTCAGGAAATAA  750

seq1  AACCAAAAAAGAGGGCTAGGCAAAAAGAATATAAATAAAATTTGATGTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAAAAAGAGGGCTAGGCAAAAAGAATATAAATAAAATTTGATGTGT  800

seq1  TGTATAATATTTGCTATGTGAAAGATATGGGAGATTAAAGGATTAACTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAATATTTGCTATGTGAAAGATATGGGAGATTAAAGGATTAACTGG  850

seq1  AGGTGAGGGCAGTGGACAATAAGTATAATAAATAATAGTTGGGTAAACCA  900
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGGTGAGGGCAGTGGACAATAAGTATAATAAATAATAGTTGGGTTAACCA  900

seq1  AAACAAAGTACACATGAAAAAACTTAATAGGAACCAGCTAATTAGTAAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAGTACACATGAAAAAACTTAATAGGAACCAGCTAATTAGTAAGC  950

seq1  TAATC-TCAAAATATGTTTTAAAAGATTAAATGAGCTTGAGAACTTGTTC  999
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTTCAAAATATGTTTTAAAAGATTAAATGAGCTTGAGAACTTGTTC  1000

seq1  TGCATTCATGAGCCTATGCAGACACGTTTATTCAATGACTATCA-CAAGG  1048
      ||||||||||||||||||||||||||||||||| |||||||||| |||||
seq2  TGCATTCATGAGCCTATGCAGACACGTTTATTC-ATGACTATCACCAAGG  1049

seq1  CGAGGCACAAGATGCCTCCCTA-TAATTTATTCCTCAGGCCATA-TGAGG  1096
      |||||||||||||||||||||| |||||||||||||| | |||| |||||
seq2  CGAGGCACAAGATGCCTCCCTATTAATTTATTCCTCA-GTCATATTGAGG  1098

seq1  AAGGCTCCAAAACCACACAGATTACCACTCTCCTTATTTCCTTACCATAT  1146
      || |||||  |||||||||||||| ||||   ||||||| |||| |||||
seq2  AA-GCTCC--AACCACACAGATTA-CACTTCTCTTATTT-CTTA-CATAT  1142

seq1  CT  1148
      ||
seq2  CT  1144