BAC Information

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BAC

Clone NameB6Ng01-208K21
Chromosome5 (Build37)
Map Location 16,588,511 - 16,589,589
singlet/doubletsinglet
Overlap genenone
Upstream geneCacna2d1, LOC668121, Hgf, EG668131
Downstream geneLOC626390, LOC668142, LOC100041749, LOC100041832, Speer4f, EG630927, Sema3c, Cd36, Gnat3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208K21.bB6Ng01-208K21.g
ACCGA027494GA027495
length1,2311,090
definitionB6Ng01-208K21.b B6Ng01-208K21.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaagagcacatcaaaactatcattcaccagaatcaagtaggcttc
atcccagggatggaagcttggtttaatatatgaaaatccattaaagtaat
ccactatatagacaaactcaaagaaaaaaagtcacataatcatctcctta
gatgcagaaaaagcatttgacaaaatataacactactttatgttaaaagt
attggagaaatcaggaattcaaggcccatatctaaacataataaaagcaa
tttactacaaaccaacagccaatatcaaattaaatagtgacatacttaaa
gcaatcccactgaaatttgggacaagataaggatgcccactctcaccata
tctattcagtatagtactcgaagtattagctagaacaataagacaacaaa
aagagatcaaggggatacaaattagtaaagaagaaataaaggtgtcacta
tttgcagatgatatgatagtatacataagagacccccaaaattctaccag
agaacttctccagctgataaacaacttcagcaaagtggccagatataaaa
ttaactcaaataaatcagtagacttcctttatacaaatgacaaacaggtt
gaaaaagaaattgggaaaaactcccttcacaagagccacaaataatataa
aatatcttggggtaactgtaaccaaacaagtgaaagacctgcttgacaat
aatttcaagtctctcaagagagaaatcgaagaagatctcagaaaatgcag
agatctccaatgctcatggattggaagaattaacataggaaaaatggcca
tccagcctaaggcaatctatagattcattgcaatccccatcaaaatccca
acacaattcttcaaagacgtggaaagaacaattctgaaattcatctggaa
agccaaaaaacccagaatagagaaaacaattcttagcaatgaaagaacag
ttggggaaatcaccatccctgacctcaagctttactacagagcaatagtg
ataaaaactgcatggtattagtactgagacagacatatgatcatggaata
gactgaagaccagatttaaccactcacacacacagactcagaccacacac
acagacccccacacccactacgtcactggatcactagaacccaaattaca
tgggaaaaagaaggcatcttcatatggggctagtctaatttctgtcaggt
ccgtgaattatggaacattgaacctcattga

gaattcagtctgttaaatactttgattaaagcatttctttaaatattgag
tttccaatttctagaaaaatgtaatctctgcctgctgtcctagcttccca
gatgtatctctctgaattaatctttaattaagcactttaatttttagaca
agtattttaagtataaaatacaattataaatttgatattattatcttgta
attatgacaaatctgacaattacttataccaactgaatcatttatacaca
ttagaacagcataaagaaacaaaaagctgaattgatcaaatacttgccat
tccacaagagtctgattccagacaggtaataacaaggatgaaaaaaactg
atttggaaaacaggttcagacttctattatcatgaaaagtagtattttgt
taacttccacatatatgtcatgctaattaccaagcctcaactgtcagttt
agattattaaaattcactaaaattagatttttaaattttttcttaatgtt
agaaaggctgaatataaggaattccaaattattttatcaagaccacagag
ccagtcatgtatctgtttctagaaatatggcagcctttttctaatgtatg
tgcctatcctacatgtctcagcctttattaagtggaaaacagacttaggt
acagtgtagtcagatcaatagtggctgttgtatatgtgtacattgcttga
tgtcctgtacaacttaggaagcatagtttgagattaggctaccaatttgc
atttatagatggtctgataaccaagcagaaaacccatgtcacatttaata
tagccaaatattaatcataaatgatctcagtggattttagttcttgtaat
ctttgcttacacaccaggtttttacatttgaaaccctctgtctacattgg
ttactctcataatacctttagttttatttagtgatgggtaggataacatt
ttggtacgtgaataaccccatatcttcctacaacacatacttagtatgaa
tcactaaaaggaggagaaaattattaggattccaatggtggagtttctca
acatgggtaatttaatcttcttccaacacatactttcagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_16588511_16589589
seq2: B6Ng01-208K21.g_67_1156

seq1  GAATTCAGTCTGTTAAATACTTTGATTAAAGCATTTCTTTAAATATTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCTGTTAAATACTTTGATTAAAGCATTTCTTTAAATATTGAG  50

seq1  TTTCCAATTTCTAGAAAAATGTAATCTCTGCCTGCTGTCCTAGCTTCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAATTTCTAGAAAAATGTAATCTCTGCCTGCTGTCCTAGCTTCCCA  100

seq1  GATGTATCTCTCTGAATTAATCTTTAATTAAGCACTTTAATTTTTAGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTATCTCTCTGAATTAATCTTTAATTAAGCACTTTAATTTTTAGACA  150

seq1  AGTATTTTAAGTATAAAATACAATTATAAATTTGATATTATTATCTTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTTAAGTATAAAATACAATTATAAATTTGATATTATTATCTTGTA  200

seq1  ATTATGACAAATCTGACAATTACTTATACCAACTGAATCATTTATACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGACAAATCTGACAATTACTTATACCAACTGAATCATTTATACACA  250

seq1  TTAGAACAGCATAAAGAAACAAAAAGCTGAATTGATCAAATACTTGCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAACAGCATAAAGAAACAAAAAGCTGAATTGATCAAATACTTGCCAT  300

seq1  TCCACAAGAGTCTGATTCCAGACAGGTAATAACAAGGATGAAAAAAACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAAGAGTCTGATTCCAGACAGGTAATAACAAGGATGAAAAAAACTG  350

seq1  ATTTGGAAAACAGGTTCAGACTTCTATTATCATGAAAAGTAGTATTTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGAAAACAGGTTCAGACTTCTATTATCATGAAAAGTAGTATTTTGT  400

seq1  TAACTTCCACATATATGTCATGCTAATTACCAAGCCTCAACTGTCAGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTCCACATATATGTCATGCTAATTACCAAGCCTCAACTGTCAGTTT  450

seq1  AGATTATTAAAATTCACTAAAATTAGATTTTTAAATTTTTTCTTAATGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTATTAAAATTCACTAAAATTAGATTTTTAAATTTTTTCTTAATGTT  500

seq1  AGAAAGGCTGAATATAAGGAATTCCAAATTATTTTATCAAGACCACAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGCTGAATATAAGGAATTCCAAATTATTTTATCAAGACCACAGAG  550

seq1  CCAGTCATGTATCTGTTTCTAGAAATATGGCAGCCTTTTTCTAATGTATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCATGTATCTGTTTCTAGAAATATGGCAGCCTTTTTCTAATGTATG  600

seq1  TGCCTATCCTACATGTCTCAGCCTTTATTAAGTGGAAAACAGACTTAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTATCCTACATGTCTCAGCCTTTATTAAGTGGAAAACAGACTTAGGT  650

seq1  ACAGTGTAGTCAGATCAATAGTGGCTGTTGTATATGTGTACATTGCTTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGTAGTCAGATCAATAGTGGCTGTTGTATATGTGTACATTGCTTGA  700

seq1  TGTCCTGTACAACTTAGGAAGCATAGTTTGAGATTAGGCTACCAATTTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGTACAACTTAGGAAGCATAGTTTGAGATTAGGCTACCAATTTGC  750

seq1  ATTTATAGATGGTCTGATAACCAAGCAGAAAACCCATGTCACATTTAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATAGATGGTCTGATAACCAAGCAGAAAACCCATGTCACATTTAATA  800

seq1  TAGCCAAATATTAATCATAAATGATCTCAGTGGATTTTAGTTCTTGTAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAAATATTAATCATAAATGATCTCAGTGGATTTTAGTTCTTGTAAT  850

seq1  CTTTGCTTACACACCAGGTTTTTACATTTGAAACCCTCTGTCTACATT-G  899
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTTTGCTTACACACCAGGTTTTTACATTTGAAACCCTCTGTCTACATTGG  900

seq1  TTACTCTCATAATACCTTTAGTTTTATTTAGTGAT-GGTAGGATAACATT  948
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTACTCTCATAATACCTTTAGTTTTATTTAGTGATGGGTAGGATAACATT  950

seq1  TTGGTACGTG-ATAACCCCATATCTTCCTACAACACATACTTAGTATGAA  997
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTGGTACGTGAATAACCCCATATCTTCCTACAACACATACTTAGTATGAA  1000

seq1  TCACTAAAAG--AGAGAAAATTATTA-GAATCCAATG--TGAGTTTCTCA  1042
      ||||||||||   ||||||||||||| || |||||||   ||||||||||
seq2  TCACTAAAAGGAGGAGAAAATTATTAGGATTCCAATGGTGGAGTTTCTCA  1050

seq1  ACAATGGTAATTAAATCT--CTCCAACACATAC-TTCAGT  1079
      |||  ||||||| |||||   |||||||||||| ||||||
seq2  ACATGGGTAATTTAATCTTCTTCCAACACATACTTTCAGT  1090


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