BAC Information

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BAC

Clone NameB6Ng01-208L24
Chromosome5 (Build37)
Map Location 51,571,991 - 51,737,484
singlet/doubletdoublet
Overlap genenone
Upstream geneEG637307, LOC100041015, LOC242987, EG624734, LOC666265, LOC100041059
Downstream genePpargc1a, Dhx15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208L24.bB6Ng01-208L24.g
ACCGA027545GA027546
length986930
definitionB6Ng01-208L24.b B6Ng01-208L24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,571,991 - 51,572,975)(51,736,558 - 51,737,484)
sequence
gaattctgcatttagagttcatagtgataaatattgtaccatgatatctt
agggcagtggtcctcaaccttcctatgctacaacctcttcaggcagtttc
tcatattgtgctgatccccaaccataaaattattttcattgatacttcat
aaccataatttataaataactgtaataaattgtaatgcaaatatctatgt
tttggaataatcctaggcaacacctatgaagggtcattcaaacccaaagg
atccacgacctacaggttgaaaaccattgtctgacaagactaaacatctc
cttatgtccaggtaaaactggcctattatacagaaaatgctttaacataa
taacagtttataaatgttagaaaaaacttaccccagagtctcttccattc
actagagatacacataatcatccaatgcagaggtagaaatcaataaaagg
tactttataatgctactccaagaaacactgtctcaaaaaaaagcaaagaa
aaagagtcagctaagtaagccaataagcagcactccaccatggtctccac
atcatgcctttcctccaagttcctgccctatttgagttccggttcagact
tcctccagtgatggactattgtgtagaagtatatgacaaatgagttgttt
tgtttttggtcatggtgtttcacagtgggcaacagaaactataagcctga
aattggaagcaagatagtagggcactgctgtgaccaacctaactagtgtt
ttggagaggactgtggaaggatattgaaagtttggatgagaacaatcatt
gagtgatttttcaaagtttggtgagctgctctgtgggagcctggaggtta
gaatgttgagagcagtacagatgatggagcctgggcttgtgatgtttcaa
aaggaatgaaaaaccctattgggccatttatgtgaagaatctgtagtacc
tggaccagctagagctaaataattgggctgtgttta

gaattcagtaatctgtactggatgtccaggcattagtatgaattaacaac
actctgccataattcattgtaattccccagagatgcagttttgataaatg
cagagtgagtttttaacaaaaatcactgtggtgaagccaaatttcagtga
agtctgggtcccattggtaatttgctttttttcctttggttgctctgctc
tgcatcccttactatcttgtgcatgtatggggagggggtgaaataaataa
aatcctttaaaaaaaacctgacaacttgaacctgaattttaataaactta
acattagtaaaaagttcaggtgattggaagaagggtttttaatcagtcca
gatagataagatcacagtcataattgctttggttgttattatttccttca
catgtgcttgtaccaaatggaaaataaagtcttgagatgtctactgatgg
aaatgaaaataatggtgttcagtgataatttgataggaagtaattggcca
cctgaagagaaaagccctcatcgtggaaataattataagtaattggttac
tccaagattggactctatttgatacactcagtgcaataaatactcctaac
taaagatgctaacttgagtatttaaggatactagcaactgcataaattgg
agttaagacagacacttaacagacagggtagccatggtcctattttggta
catgggcatgatttatttttatattttaattagctgccatttgattacaa
atgaagatcttgcatgaagttgggatgtattgctcttgtccaaaggagaa
agaagaatggcaatattgatctctttttactggttattttatttaattag
atttcaatattatcccctttttttccattttttattaggtatttagcctc
atttatattttccaatgctaataccaaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_51571991_51572975
seq2: B6Ng01-208L24.b_49_1034

seq1  GAATTCTGCATTTAGAGTTCATAGTGATAAATATTGTACCATGATATCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCATTTAGAGTTCATAGTGATAAATATTGTACCATGATATCTT  50

seq1  AGGGCAGTGGTCCTCAACCTTCCTATGCTACAACCTCTTCAGGCAGTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAGTGGTCCTCAACCTTCCTATGCTACAACCTCTTCAGGCAGTTTC  100

seq1  TCATATTGTGCTGATCCCCAACCATAAAATTATTTTCATTGATACTTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATTGTGCTGATCCCCAACCATAAAATTATTTTCATTGATACTTCAT  150

seq1  AACCATAATTTATAAATAACTGTAATAAATTGTAATGCAAATATCTATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATAATTTATAAATAACTGTAATAAATTGTAATGCAAATATCTATGT  200

seq1  TTTGGAATAATCCTAGGCAACACCTATGAAGGGTCATTCAAACCCAAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAATAATCCTAGGCAACACCTATGAAGGGTCATTCAAACCCAAAGG  250

seq1  ATCCACGACCTACAGGTTGAAAACCATTGTCTGACAAGACTAAACATCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACGACCTACAGGTTGAAAACCATTGTCTGACAAGACTAAACATCTC  300

seq1  CTTATGTCCAGGTAAAACTGGCCTATTATACAGAAAATGCTTTAACATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGTCCAGGTAAAACTGGCCTATTATACAGAAAATGCTTTAACATAA  350

seq1  TAACAGTTTATAAATGTTAGAAAAAACTTACCCCAGAGTCTCTTCCATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGTTTATAAATGTTAGAAAAAACTTACCCCAGAGTCTCTTCCATTC  400

seq1  ACTAGAGATACACATAATCATCCAATGCAGAGGTAGAAATCAATAAAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAGATACACATAATCATCCAATGCAGAGGTAGAAATCAATAAAAGG  450

seq1  TACTTTATAATGCTACTCCAAGAAACACTGTCTCAAAAAAAAGCAAAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTATAATGCTACTCCAAGAAACACTGTCTCAAAAAAAAGCAAAGAA  500

seq1  AAAGAGTCAGCTAAGTAAGCCAATAAGCAGCACTCCACCATGGTCTCCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTCAGCTAAGTAAGCCAATAAGCAGCACTCCACCATGGTCTCCAC  550

seq1  ATCATGCCTTTCCTCCAAGTTCCTGCCCTATTTGAGTTCCGGTTCAGACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGCCTTTCCTCCAAGTTCCTGCCCTATTTGAGTTCCGGTTCAGACT  600

seq1  TCCTCCAGTGATGGACTATTGTGTAGAAGTATATGACAAATGAGTTGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCAGTGATGGACTATTGTGTAGAAGTATATGACAAATGAGTTGTTT  650

seq1  TGTTTTTGGTCATGGTGTTTCACAGTGGGCAACAGAAACTATAAGCCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTGGTCATGGTGTTTCACAGTGGGCAACAGAAACTATAAGCCTGA  700

seq1  AATTGGAAGCAAGATAGTAGGGCACTGCTGTGACCAACCTAACTAGTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGAAGCAAGATAGTAGGGCACTGCTGTGACCAACCTAACTAGTGTT  750

seq1  TTGGAGAGGACTGTGGAAGGATATTGAAAGTTTGGATGAGAACAATCATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGAGGACTGTGGAAGGATATTGAAAGTTTGGATGAGAACAATCATT  800

seq1  GAGTGATTTTTCAAAGTTTGGTGAGCTGCTCTGTGGGAGCCTGGAGGTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGATTTTTCAAAGTTTGGTGAGCTGCTCTGTGGGAGCCTGGAGGTTA  850

seq1  GAATGTTGAGAGCAGTACAGATGATGGAGGCCTGGGCTTGTGATGTTTCA  900
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GAATGTTGAGAGCAGTACAGATGATGGA-GCCTGGGCTTGTGATGTTTCA  899

seq1  AAAGGAATGAAAAACCCTATTGGGCCATTTATGTGAAGAATCTGTAGTAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAATGAAAAACCCTATTGGGCCATTTATGTGAAGAATCTGTAGTAC  949

seq1  CTGGA-CAGCTAGAGCTAAATAATT-GGCTGTGTTTA  985
      ||||| ||||||||||||||||||| |||||||||||
seq2  CTGGACCAGCTAGAGCTAAATAATTGGGCTGTGTTTA  986


seq1: chr5_51736558_51737484
seq2: B6Ng01-208L24.g_65_994 (reverse)

seq1  CTTTTGGTA-TAGCATTGG-AAATATAAATGA-GCTAAATACCTAATAAA  47
      ||||||||| ||||||||| |||||||||||| |||||||||||||||||
seq2  CTTTTGGTATTAGCATTGGAAAATATAAATGAGGCTAAATACCTAATAAA  50

seq1  AAATGGAAAAAAA-GGGATAATATTTGAAATCTAATTAAATAAAATAACC  96
      ||||||||||||| ||||||||| ||||||||||||||||||||||||||
seq2  AAATGGAAAAAAAGGGGATAATA-TTGAAATCTAATTAAATAAAATAACC  99

seq1  AGTAAAAAGAGATCAATATTGCCATTCTTCTTTCTCCTTTGGACAAGAGC  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAAAGAGATCAATATTGCCATTCTTCTTTCTCCTTTGGACAAGAGC  149

seq1  AATACATCCCAACTTCATGCAAGATCTTCATTTGTAATCAAATGGCAGCT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATCCCAACTTCATGCAAGATCTTCATTTGTAATCAAATGGCAGCT  199

seq1  AATTAAAATATAAAAATAAATCATGCCCATGTACCAAAATAGGACCATGG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAATATAAAAATAAATCATGCCCATGTACCAAAATAGGACCATGG  249

seq1  CTACCCTGTCTGTTAAGTGTCTGTCTTAACTCCAATTTATGCAGTTGCTA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCTGTCTGTTAAGTGTCTGTCTTAACTCCAATTTATGCAGTTGCTA  299

seq1  GTATCCTTAAATACTCAAGTTAGCATCTTTAGTTAGGAGTATTTATTGCA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCTTAAATACTCAAGTTAGCATCTTTAGTTAGGAGTATTTATTGCA  349

seq1  CTGAGTGTATCAAATAGAGTCCAATCTTGGAGTAACCAATTACTTATAAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTGTATCAAATAGAGTCCAATCTTGGAGTAACCAATTACTTATAAT  399

seq1  TATTTCCACGATGAGGGCTTTTCTCTTCAGGTGGCCAATTACTTCCTATC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCCACGATGAGGGCTTTTCTCTTCAGGTGGCCAATTACTTCCTATC  449

seq1  AAATTATCACTGAACACCATTATTTTCATTTCCATCAGTAGACATCTCAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATCACTGAACACCATTATTTTCATTTCCATCAGTAGACATCTCAA  499

seq1  GACTTTATTTTCCATTTGGTACAAGCACATGTGAAGGAAATAATAACAAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTATTTTCCATTTGGTACAAGCACATGTGAAGGAAATAATAACAAC  549

seq1  CAAAGCAATTATGACTGTGATCTTATCTATCTGGACTGATTAAAAACCCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCAATTATGACTGTGATCTTATCTATCTGGACTGATTAAAAACCCT  599

seq1  TCTTCCAATCACCTGAACTTTTTACTAATGTTAAGTTTATTAAAATTCAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCAATCACCTGAACTTTTTACTAATGTTAAGTTTATTAAAATTCAG  649

seq1  GTTCAAGTTGTCAGGTTTTTTTTAAAGGATTTTATTTATTTCACCCCCTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAGTTGTCAGGTTTTTTTTAAAGGATTTTATTTATTTCACCCCCTC  699

seq1  CCCATACATGCACAAGATAGTAAGGGATGCAGAGCAGAGCAACCAAAGGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATACATGCACAAGATAGTAAGGGATGCAGAGCAGAGCAACCAAAGGA  749

seq1  AAAAAAGCAAATTACCAATGGGACCCAGACTTCACTGAAATTTGGCTTCA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGCAAATTACCAATGGGACCCAGACTTCACTGAAATTTGGCTTCA  799

seq1  CCACAGTGATTTTTGTTAAAAACTCACTCTGCATTTATCAAAACTGCATC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGTGATTTTTGTTAAAAACTCACTCTGCATTTATCAAAACTGCATC  849

seq1  TCTGGGGAATTACAATGAATTATGGCAGAGTGTTGTTAATTCATACTAAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGGAATTACAATGAATTATGGCAGAGTGTTGTTAATTCATACTAAT  899

seq1  GCCTGGACATCCAGTACAGATTACTGAATTC  927
      |||||||||||||||||||||||||||||||
seq2  GCCTGGACATCCAGTACAGATTACTGAATTC  930


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