BAC Information

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BAC

Clone NameB6Ng01-208O06
Chromosome5 (Build37)
Map Location 138,644,463 - 138,725,840
singlet/doubletdoublet
Overlap geneGm454, BC055004, 0910001L09Rik, BC037034, Gal3st4, Gpc2, Stag3
Upstream geneAche, 2700038N03Rik, Ars2, Trip6, Slc12a9, Ephb4, Zan, EG665591, Epo, Pop7, EG666372, Perq1, Gnb2, Actl6b, Trfr2, Mospd3, EG640050, Pcolce, Fbxo24, Lrch4, Sap25, Irs3, Hrbl, LOC624083, 6430598A04Rik, Tsc22d4, 2010007H12Rik, Bcdin3, Zcwpw1, Pilra, Pilrb1, Pilrb2, LOC100041016, LOC100041027, Cyp3a13, LOC666429, Gje1, Azgp1, EG243302, LOC100041050, Smok3a, Smok3b, Smok3c, Zkscan1, Zscan21, Zfp113, Cops6, Mcm7, Ap4m1, Taf6, 2610019P18Rik, BC038925
Downstream geneGot2-ps1, 2610020C11Rik, LOC433955, EG666533, 1700123K08Rik, Zfp68, LOC665882, A430033K04Rik, BC004044, EG384244, Pdgfa, Prkar1b, Heatr2, Unc84a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208O06.bB6Ng01-208O06.g
ACCGA027650GA027651
length1,079700
definitionB6Ng01-208O06.b B6Ng01-208O06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(138,724,756 - 138,725,840)(138,644,463 - 138,645,157)
sequence
gaattcaaaggcatgtaacacaagacttgcaaagctttatacacttttaa
ctgatatgcaataaaaacataaataataaaaaggggggctagagagatgg
ctcagcagttaggagcactcactgctcctccagaggaccaggtttgattc
ccagcacccacatggcagttcacaactgtgtataatgtcagttccaaggg
atccaatcccctcacagacatacagtacacaaaggcaaaaaccaatgcac
ataaaataaaaatcattaaaaataaatatggcaacagaaaaatacttaat
ataactgtttaagaagagacatatctaggtttttctaggtcacccagtga
ctcttcttgtttcttctagaaaggtagaattgatcctgttctgtgatacc
tttagaataggagcactctcctctgagggccctcttattgtcactgtagg
ggttcatatccactgtcttatctttattgcctcacatatgctagataaaa
tgccaacaacaaactaaatttgtaaattctgatctttattgtctcaccct
acaaagaatcagatggtatcaagaagcagatgagtttggtgtgtgacaca
tgcctattatctagaagttgagaggctaagaccagcctgacctacatact
gagttccaggccagccaggaatacattgagaaatcctgtctcaacacaga
gatgaagtttgcagttgcctctctctaaatccagcatagccttttgctca
ctgagctcaagcaggagagtaagcaaggtctcaatagaatgacctatata
aagcagactagctgaaagaccacaggtgggaaagcacccaacaactagct
acagacactaagagtatgccctcttctggcaaggggaagaaagctcacca
ttctaagcctgatactgtggccctcttgtgaaagtagaccacaagtccac
tgaatttctggtttgaaaactccctttcaagggtctggcgtggaaaattg
ctcagacttcataattagatctgcacttagctattgtccttgagggagcc
aataagactatctgtgagcattttgaaga
gaattccagtctcctcctggaggcccacataagagagcctccttctagct
gccttcagattaacatgtagaactctcagctccttctccagcaccatgtc
tactacctggatactgccaacatttccaccatgacgataatgaactgaac
ctctgaaactgtaagctagccccaattaactatctttttaagagttgctt
tggtcatggtgtctgttcacagcaatgagacaacatctaatcttactgcc
ttcacctctagagtgctgagacttcatatgtgcacctccaaactcagggg
gtaactgttcatgtctccacttatagatgggaactctgaggaatagaata
ttgaggaagtaatttgccatgataaagaacaatgatacacctttaatccc
aggactcgggaggcagacgcaggcagatttctgattttgaggccagcctg
gtctacaaagtgagttccaggacagacagagctatacaaaaaaccaaaac
aaaacaaaaaaagaaaacaaaacataagcccagagcagggggaaggacaa
gaggtaagtgccattctccagatccttcacctccccctgggactcctgct
ctcaattctgggcccaacagccgagcccgaaacagatctccactgtgtaa
ctttagctctttcctcggtgatcccttagccacaaggatgggcttctagg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_138724756_138725840
seq2: B6Ng01-208O06.b_47_1125 (reverse)

seq1  TCTTCAAAAATGCTCACCAGATAGGTCTTTATTGCCTCCCTCAAAGGACC  50
      ||||| |||||||||| |||||| ||| |||||| ||||||| ||||| |
seq2  TCTTC-AAAATGCTCA-CAGATA-GTC-TTATTGGCTCCCTC-AAGGA-C  44

seq1  AATAGCTAAGTGCAGATCTAATTATGAAGTCCTGAGCAATTTTCCACGCC  100
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AATAGCTAAGTGCAGATCTAATTATGAAGT-CTGAGCAATTTTCCACGCC  93

seq1  AGACCCTTG-AAGGGAGTTTTCAAACCAGAAATTCAGTGGACTTGTGGTC  149
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCTTGAAAGGGAGTTTTCAAACCAGAAATTCAGTGGACTTGTGGTC  143

seq1  TACTTTCACAAGAGGGCCACAGTATCAGGCTTAGAATGGTGAGCTTTCTT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTCACAAGAGGGCCACAGTATCAGGCTTAGAATGGTGAGCTTTCTT  193

seq1  CCCCTTGCCAGAAGAGGGCATACTCTTAGTGTCTGTAGCTAGTTGTTGGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTGCCAGAAGAGGGCATACTCTTAGTGTCTGTAGCTAGTTGTTGGG  243

seq1  TGCTTTCCCACCTGTGGTCTTTCAGCTAGTCTGCTTTATATAGGTCATTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCCCACCTGTGGTCTTTCAGCTAGTCTGCTTTATATAGGTCATTC  293

seq1  TATTGAGACCTTGCTTACTCTCCTGCTTGAGCTCAGTGAGCAAAAGGCTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAGACCTTGCTTACTCTCCTGCTTGAGCTCAGTGAGCAAAAGGCTA  343

seq1  TGCTGGATTTAGAGAGAGGCAACTGCAAACTTCATCTCTGTGTTGAGACA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGATTTAGAGAGAGGCAACTGCAAACTTCATCTCTGTGTTGAGACA  393

seq1  GGATTTCTCAATGTATTCCTGGCTGGCCTGGAACTCAGTATGTAGGTCAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTCTCAATGTATTCCTGGCTGGCCTGGAACTCAGTATGTAGGTCAG  443

seq1  GCTGGTCTTAGCCTCTCAACTTCTAGATAATAGGCATGTGTCACACACCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTCTTAGCCTCTCAACTTCTAGATAATAGGCATGTGTCACACACCA  493

seq1  AACTCATCTGCTTCTTGATACCATCTGATTCTTTGTAGGGTGAGACAATA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCATCTGCTTCTTGATACCATCTGATTCTTTGTAGGGTGAGACAATA  543

seq1  AAGATCAGAATTTACAAATTTAGTTTGTTGTTGGCATTTTATCTAGCATA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCAGAATTTACAAATTTAGTTTGTTGTTGGCATTTTATCTAGCATA  593

seq1  TGTGAGGCAATAAAGATAAGACAGTGGATATGAACCCCTACAGTGACAAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGGCAATAAAGATAAGACAGTGGATATGAACCCCTACAGTGACAAT  643

seq1  AAGAGGGCCCTCAGAGGAGAGTGCTCCTATTCTAAAGGTATCACAGAACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGGCCCTCAGAGGAGAGTGCTCCTATTCTAAAGGTATCACAGAACA  693

seq1  GGATCAATTCTACCTTTCTAGAAGAAACAAGAAGAGTCACTGGGTGACCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCAATTCTACCTTTCTAGAAGAAACAAGAAGAGTCACTGGGTGACCT  743

seq1  AGAAAAACCTAGATATGTCTCTTCTTAAACAGTTATATTAAGTATTTTTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAACCTAGATATGTCTCTTCTTAAACAGTTATATTAAGTATTTTTC  793

seq1  TGTTGCCATATTTATTTTTAATGATTTTTATTTTATGTGCATTGGTTTTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCCATATTTATTTTTAATGATTTTTATTTTATGTGCATTGGTTTTT  843

seq1  GCCTTTGTGTACTGTATGTCTGTGAGGGGATTGGATCCCTTGGAACTGAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTGTGTACTGTATGTCTGTGAGGGGATTGGATCCCTTGGAACTGAC  893

seq1  ATTATACACAGTTGTGAACTGCCATGTGGGTGCTGGGAATCAAACCTGGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATACACAGTTGTGAACTGCCATGTGGGTGCTGGGAATCAAACCTGGT  943

seq1  CCTCTGGAGGAGCAGTGAGTGCTCCTAACTGCTGAGCCATCTCTCTAGCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGGAGGAGCAGTGAGTGCTCCTAACTGCTGAGCCATCTCTCTAGCC  993

seq1  CCCCTTTTTATTATTTATGTTTTTATTGCATATCAGTTAAAAGTGTATAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTTTTATTATTTATGTTTTTATTGCATATCAGTTAAAAGTGTATAA  1043

seq1  AGCTTTGCAAGTCTTGTGTTACATGCCTTTGAATTC  1085
      ||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGCAAGTCTTGTGTTACATGCCTTTGAATTC  1079

seq1: chr5_138644463_138645157
seq2: B6Ng01-208O06.g_68_767

seq1  GAATTCCAGTCTCCTCCTGGAGGCCCACATAAGAGAGCCTCCTTCTAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTCTCCTCCTGGAGGCCCACATAAGAGAGCCTCCTTCTAGCT  50

seq1  GCCTTCAGATTAACATGTAGAACTCTCAGCTCCTTCTCCAGCACCATGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCAGATTAACATGTAGAACTCTCAGCTCCTTCTCCAGCACCATGTC  100

seq1  TACTACCTGGATACTGCCAACATTTCCACCATGACGATAATGAACTGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACCTGGATACTGCCAACATTTCCACCATGACGATAATGAACTGAAC  150

seq1  CTCTGAAACTGTAAGCTAGCCCCAATTAACTATCTTTTTAAGAGTTGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAAACTGTAAGCTAGCCCCAATTAACTATCTTTTTAAGAGTTGCTT  200

seq1  TGGTCATGGTGTCTGTTCACAGCAATGAGACAACATCTAATCTTACTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCATGGTGTCTGTTCACAGCAATGAGACAACATCTAATCTTACTGCC  250

seq1  TTCACCTCTAGAGTGCTGAGACTTCATATGTGCACCTCCAAACTCAGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCTCTAGAGTGCTGAGACTTCATATGTGCACCTCCAAACTCAGGGG  300

seq1  GTAACTGTTCATGTCTCCACTTATAGATGGGAACTCTGAGGAATAGAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTGTTCATGTCTCCACTTATAGATGGGAACTCTGAGGAATAGAATA  350

seq1  TTGAGGAAGTAATTTGCCATGATAAAGAACAATGATACACCTTTAATCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGAAGTAATTTGCCATGATAAAGAACAATGATACACCTTTAATCCC  400

seq1  AGGACTCGGGAGGCAGACGCAGGCAGATTTCTGATTTTGAGGCCAGCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTCGGGAGGCAGACGCAGGCAGATTTCTGATTTTGAGGCCAGCCTG  450

seq1  GTCTACAAAGTGAGTTCCAGGACAGACAGAGCTATACAAAAAACCAAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACAAAGTGAGTTCCAGGACAGACAGAGCTATACAAAAAACCAAAAC  500

seq1  AAAACAAAAAAAGAAAACAAAACAAAAGCCCAGAGCAGGGGGAAGGACAA  550
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AAAACAAAAAAAGAAAACAAAACATAAGCCCAGAGCAGGGGGAAGGACAA  550

seq1  GAGGTAAGTGCCATTCTCCAGATCCTTCACCT-CCCCTGGGACTCCTGCT  599
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GAGGTAAGTGCCATTCTCCAGATCCTTCACCTCCCCCTGGGACTCCTGCT  600

seq1  CTCAATTCTGGGCCCAGCAGCCGAGCCCGAAACAGATCTCCACTGTG-AA  648
      |||||||||||||||| |||||||||||||||||||||||||||||| ||
seq2  CTCAATTCTGGGCCCAACAGCCGAGCCCGAAACAGATCTCCACTGTGTAA  650

seq1  CTTTAGCTC-TTCCTCGGTGAT-CCTTAGCCACAAGGAT-GGCTTCTAGG  695
      ||||||||| |||||||||||| |||||||||||||||| ||||||||||
seq2  CTTTAGCTCTTTCCTCGGTGATCCCTTAGCCACAAGGATGGGCTTCTAGG  700