BAC Information

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BAC

Clone NameB6Ng01-209D12
Chromosome5 (Build37)
Map Location 77,552,641 - 77,675,651
singlet/doubletdoublet
Overlap geneSpink2
Upstream geneSrd5a2l, Tmem165, Apc-ps1, Clock, Ube2n-ps1, EG665055, Pdcl2, Pafah1b1-ps3, Nmu, LOC665065, EG639545, Exoc1, Cep135, LOC100039117, A730089K16Rik, LOC665107, LOC100039299, C530008M17Rik, A230062G08Rik, Ppat, LOC664998, Paics, Srp72, Arl9, 1700023E05Rik, Hod
Downstream geneRest, 2610024G14Rik, Polr2b, Igfbp7, Pea15b, LOC669227, LOC100039398
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209D12.bB6Ng01-209D12.g
ACCGA027893GA027894
length1,1781,088
definitionB6Ng01-209D12.b B6Ng01-209D12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,674,493 - 77,675,651)(77,552,641 - 77,553,709)
sequence
gaattccccttctgcggctttataatattaagattcatttgcctacagtc
agagcagcttggggacctgactaagatctgagatgcagccaggcgtggtc
gcacacgcctttaatcccagcactccgaaggcagagccaggcggatttct
gagttcgaggccagcctggtctacaaagtgagttccagagaaaccctgtc
tcgaaaaaaaaaaaaaagatctgagatgcaagtgttaccttcaaccacgt
gacagtggagaagcgacaagaaaccctcatatttccgtgtgagccaacct
tgggaagtcccgttagctcatggtgtcttgttcagtggagcctcgcccac
tttggctcagaagtacttcagctagggctgctgttagtgaggcgatggtc
tccattgtgggcctagcctccctgggtaattgacagcgacaggggctgct
gaggaacaccgcagagcagacatcaaaggcaattattgaaaagcccagct
ttggggagtgaatagaggcagtcacagagaatgtcatcggcagataaatt
ccttaggttaaaactctgaaaaatgaaaccccagggctttctatgaacaa
gaagtttgcagctaaagaagttgccagcctgtgcttcctgcggtcgagtg
tctcatgtttgcaaatacacttcattccagaacctcaaacaccgtttgat
tacattacctaagtcctcccatctgttcacgccgcagtttctccctgcct
gcttgtagtaaataatttacactcccggctctgcgcaagattctgtttca
agcttctgaccatgaccgggctgagcagggagacacagaagtaacagggc
tcatgagtttatcaccttgggcaactacatctgtcaggattgggctccca
ggagggaggaacaaattcctcttctagctcctcacaaaatcgagtagacc
ttgatgtttaagtggtcccgaagaactgagagccccttcccccgcttctt
ttactttttgttttgttttgctttgttttgagaccgggatctttacttag
ttagtctaggcaggatgaaacttacgaaatgtgtacatttatagaataga
ttggcatagttatcctgaactataatcgcagccattccgagaggcctgga
tgcaagaaggattaaggagttggatctt
gaattcagccttgcagggcacctctgcctggtcccggggctttcccatga
ggtttctcttagacttcatttgagcttcttcataccatggtgagctcggg
tagttaaatgctccagtgcttaaatgctcccggttccatccaggcagcag
ctgcaccaacatttagggcctggtcttagaaatcttctgacatcatgcct
acagcggtctgttggtcaccagccacgcccacattgcctcccactagaaa
gttagttctggaagatgaggatctagagaggcagttctgaaagaatacaa
accattacgtccctctctggaagacgcaatgtaatatgccattaggtgtg
aatgaacggaacgttcttgggaaacatttgtatttgaagaaattatgtca
acctccaagttcaaggctggtctgatctacatagcaagttccaaggcaac
cagagctgcacagagagaaaaaagaaagaataaagaaagagagaaagaaa
ggaagaaagaaaagataaaaataaaaaaggagacacacagttgtacacac
ccgagtgtgtaagagagtatgtacgacttctcaagagtgagagggtttcc
cagacattgtatcaaatccatttcctttgagtatttacagtgagagggag
aaagtgcagacacatccagctgcctcttagggaagccacaaatctttggt
ttcctgtcccagcacttgggcttggcattttcaaattaccagccaaccat
ccaacagtcagttcctgttacattttgtgagatacgagattctttttttt
tttttttttttgccattttagcaaagaaaaataaagcaaaatggcatcaa
ggtgaccctggggtaaggtagaaaaataggtgcagattccaagtgacagg
cacttggctgaaccaaagctgtcctggggacaggctgtgacgagtacctc
tttctccttctgggaggccaccatgtctattgttcgccttggctttatgt
ctggatgggaacaggaggcagaagaaaccaccgggccctgctgacatggc
tgggagcagccttgggcttcaatgcctgcctgacaccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_77674493_77675651
seq2: B6Ng01-209D12.b_46_1223 (reverse)

seq1  AAGATCCAAACTCC-TAATCC-TCCTGCATC--AGCCTCTC-GAAT-GCT  44
      ||||||| |||||| |||||| || ||||||   ||||||| |||| |||
seq2  AAGATCC-AACTCCTTAATCCTTCTTGCATCCAGGCCTCTCGGAATGGCT  49

seq1  GCGATTATAG-TCAGGAT-ACTATGCCCATCTA-TCTAT-AATGTACAAC  90
      |||||||||| ||||||| |||||||| ||||| ||||| ||||||| ||
seq2  GCGATTATAGTTCAGGATAACTATGCCAATCTATTCTATAAATGTAC-AC  98

seq1  ATTTTCGTGAGTTTCATCCTGCCTAGACT-ACTATGT-AAGATCCC-GTC  137
      | |||||| |||||||||||||||||||| |||| || |||||||| |||
seq2  A-TTTCGTAAGTTTCATCCTGCCTAGACTAACTAAGTAAAGATCCCGGTC  147

seq1  TCAAAACAAAGCAAAACAAAACAAAAAGTAAAAGAAGCGGGGG-AGGGGC  186
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TCAAAACAAAGCAAAACAAAACAAAAAGTAAAAGAAGCGGGGGAAGGGGC  197

seq1  TCTCAGTTCTTCGGGACCACTTAAACATC-AGGTCTACTCGATTTTGTGA  235
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TCTCAGTTCTTCGGGACCACTTAAACATCAAGGTCTACTCGATTTTGTGA  247

seq1  GGAGCTAG-AGAGGAATTTGTTCCTCCCTCCT-GGAG-CCAATCCTGACA  282
      |||||||| ||||||||||||||||||||||| |||| ||||||||||||
seq2  GGAGCTAGAAGAGGAATTTGTTCCTCCCTCCTGGGAGCCCAATCCTGACA  297

seq1  GATGTAGTTG-CCAAGGTGAT-AACTCATGAGCCCTGTTACTTCTGTGTC  330
      |||||||||| |||||||||| ||||||||||||||||||||||||||||
seq2  GATGTAGTTGCCCAAGGTGATAAACTCATGAGCCCTGTTACTTCTGTGTC  347

seq1  TCCCTGCTCAG-CCGGTCATGGTCAGAAGCTTGAAACAGAATCTTGCGCA  379
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGCTCAGCCCGGTCATGGTCAGAAGCTTGAAACAGAATCTTGCGCA  397

seq1  GAGCCGGGAGTGT-AATTATTTACTACAAGCAGGCAGGGAGAAACTGCGG  428
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GAGCCGGGAGTGTAAATTATTTACTACAAGCAGGCAGGGAGAAACTGCGG  447

seq1  CGTGAACAGATGGGAGGACTTAGGTAATGTAATCAAACGGTGTTTGAGGT  478
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAACAGATGGGAGGACTTAGGTAATGTAATCAAACGGTGTTTGAGGT  497

seq1  TCTGGAATGAAGTGTATTTGCAAACATGAGACACTCGACCGCAGGAAGCA  528
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAATGAAGTGTATTTGCAAACATGAGACACTCGACCGCAGGAAGCA  547

seq1  CAGGCTGGCAACTTCTTTAGCTGCAAACTTCTTGTTCATAGAAAGCCCTG  578
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGGCAACTTCTTTAGCTGCAAACTTCTTGTTCATAGAAAGCCCTG  597

seq1  GGGTTTCATTTTTCAGAGTTTTAACCTAAGGAATTTATCTGCCGATGACA  628
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTCATTTTTCAGAGTTTTAACCTAAGGAATTTATCTGCCGATGACA  647

seq1  TTCTCTGTGACTGCCTCTATTCACTCCCCAAAGCTGGGCTTTTCAATAAT  678
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGTGACTGCCTCTATTCACTCCCCAAAGCTGGGCTTTTCAATAAT  697

seq1  TGCCTTTGATGTCTGCTCTGCGGTGTTCCTCAGCAGCCCCTGTCGCTGTC  728
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTGATGTCTGCTCTGCGGTGTTCCTCAGCAGCCCCTGTCGCTGTC  747

seq1  AATTACCCAGGGAGGCTAGGCCCACAATGGAGACCATCGCCTCACTAACA  778
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACCCAGGGAGGCTAGGCCCACAATGGAGACCATCGCCTCACTAACA  797

seq1  GCAGCCCTAGCTGAAGTACTTCTGAGCCAAAGTGGGCGAGGCTCCACTGA  828
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCCTAGCTGAAGTACTTCTGAGCCAAAGTGGGCGAGGCTCCACTGA  847

seq1  ACAAGACACCATGAGCTAACGGGACTTCCCAAGGTTGGCTCACACGGAAA  878
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGACACCATGAGCTAACGGGACTTCCCAAGGTTGGCTCACACGGAAA  897

seq1  TATGAGGGTTTCTTGTCGCTTCTCCACTGTCACGTGGTTGAAGGTAACAC  928
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGGGTTTCTTGTCGCTTCTCCACTGTCACGTGGTTGAAGGTAACAC  947

seq1  TTGCATCTCAGATCTTTTTTTTTTTTTTCGAGACAGGGTTTCTCTGGAAC  978
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATCTCAGATCTTTTTTTTTTTTTTCGAGACAGGGTTTCTCTGGAAC  997

seq1  TCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGGCTCTG  1028
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGGCTCTG  1047

seq1  CCTTCGGAGTGCTGGGATTAAAGGCGTGTGCGACCACGCCTGGCTGCATC  1078
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCGGAGTGCTGGGATTAAAGGCGTGTGCGACCACGCCTGGCTGCATC  1097

seq1  TCAGATCTTAGTCAGGTCCCCAAGCTGCTCTGACTGTAGGCAAATGAATC  1128
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATCTTAGTCAGGTCCCCAAGCTGCTCTGACTGTAGGCAAATGAATC  1147

seq1  TTAATATTATAAAGCCGCAGAAGGGGAATTC  1159
      |||||||||||||||||||||||||||||||
seq2  TTAATATTATAAAGCCGCAGAAGGGGAATTC  1178

seq1: chr5_77552641_77553709
seq2: B6Ng01-209D12.g_68_1155

seq1  GAATTCAGCCTTGCAGGGCACCTCTGCCTGGTCCCGGGGCTTTCCCATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCCTTGCAGGGCACCTCTGCCTGGTCCCGGGGCTTTCCCATGA  50

seq1  GGTTTCTCTTAGACTTCATTTGAGCTTCTTCATACCATGGTGAGCTCGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTCTTAGACTTCATTTGAGCTTCTTCATACCATGGTGAGCTCGGG  100

seq1  TAGTTAAATGCTCCAGTGCTTAAATGCTCCCGGTTCCATCCAGGCAGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAAATGCTCCAGTGCTTAAATGCTCCCGGTTCCATCCAGGCAGCAG  150

seq1  CTGCACCAACATTTAGGGCCTGGTCTTAGAAATCTTCTGACATCATGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACCAACATTTAGGGCCTGGTCTTAGAAATCTTCTGACATCATGCCT  200

seq1  ACAGCGGTCTGTTGGTCACCAGCCACGCCCACATTGCCTCCCACTAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCGGTCTGTTGGTCACCAGCCACGCCCACATTGCCTCCCACTAGAAA  250

seq1  GTTAGTTCTGGAAGATGAGGATCTAGAGAGGCAGTTCTGAAAGAATACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTTCTGGAAGATGAGGATCTAGAGAGGCAGTTCTGAAAGAATACAA  300

seq1  ACCATTACGTCCCTCTCTGGAAGACGCAATGTAATATGCCATTAGGTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTACGTCCCTCTCTGGAAGACGCAATGTAATATGCCATTAGGTGTG  350

seq1  AATGAACGGAACGTTCTTGGGAAACATTTGTATTTGAAGAAATTATGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAACGGAACGTTCTTGGGAAACATTTGTATTTGAAGAAATTATGTCA  400

seq1  ACCTCCAAGTTCAAGGCTGGTCTGATCTACATAGCAAGTTCCAAGGCAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCAAGTTCAAGGCTGGTCTGATCTACATAGCAAGTTCCAAGGCAAC  450

seq1  CAGAGCTGCACAGAGAGAAAAAAGAAAGAATAAAGAAAGAGAGAAAGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTGCACAGAGAGAAAAAAGAAAGAATAAAGAAAGAGAGAAAGAAA  500

seq1  GGAAGAAAGAAAAGATAAAAATAAAAAAGGAGACACACAGTTGTACACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAAGAAAAGATAAAAATAAAAAAGGAGACACACAGTTGTACACAC  550

seq1  CCGAGTGTGTAAGAGAGTATGTACGACTTCTCAAGAGTGAGAGGGTTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGTGTGTAAGAGAGTATGTACGACTTCTCAAGAGTGAGAGGGTTTCC  600

seq1  CAGACATTGTATCAAATCCATTTCCTTTGAGTATTTACAGTGAGAGGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACATTGTATCAAATCCATTTCCTTTGAGTATTTACAGTGAGAGGGAG  650

seq1  AAAGTGCAGACACATCCAGCTGCCTCTTAGGGAAGCCACAAATCTTTGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGCAGACACATCCAGCTGCCTCTTAGGGAAGCCACAAATCTTTGGT  700

seq1  TTCCTGTCCCAGCACTTGGGCTTGGCATTTTCAAATTACCAGCCAACCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTCCCAGCACTTGGGCTTGGCATTTTCAAATTACCAGCCAACCAT  750

seq1  CCAACAGTCAGTTCCTGTTACATTTTGTGAGATACGAGATTCTTTTTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAGTCAGTTCCTGTTACATTTTGTGAGATACGAGATTCTTTTTTTT  800

seq1  TTTTTTTTTTTGCCATTTTTAGCAAAGAAAAATAAAGC-AAATGGCATCA  849
      ||||||||||||||| |||||||||||||||||||||| |||||||||||
seq2  TTTTTTTTTTTGCCA-TTTTAGCAAAGAAAAATAAAGCAAAATGGCATCA  849

seq1  AGGTGACCCT-GGGTAAGGTAG-AAAATAGGTGCAGA-TCCAAGTGACAG  896
      |||||||||| ||||||||||| |||||||||||||| ||||||||||||
seq2  AGGTGACCCTGGGGTAAGGTAGAAAAATAGGTGCAGATTCCAAGTGACAG  899

seq1  GCACTT-GCTGAACCAAAGCTGTCCT-GGGACAGGCTGTGACGAGTA-CT  943
      |||||| ||||||||||||||||||| |||||||||||||||||||| ||
seq2  GCACTTGGCTGAACCAAAGCTGTCCTGGGGACAGGCTGTGACGAGTACCT  949

seq1  C-TTCTCCTTCT-GGAAGCCA-CATGTCTA-TGTTCGCCTTTGC-TTATG  988
      | |||||||||| ||| |||| |||||||| |||||||||| || |||||
seq2  CTTTCTCCTTCTGGGAGGCCACCATGTCTATTGTTCGCCTTGGCTTTATG  999

seq1  TCCTGAT-GGAACA-GAGGCAGAAGAA--CAC--GGCCCTGCTGACATGC  1032
      ||  ||| |||||| ||||||||||||  |||  ||||||||||||||| 
seq2  TCTGGATGGGAACAGGAGGCAGAAGAAACCACCGGGCCCTGCTGACATGG  1049

seq1  CTGGGAGCAGGCTTGGGCCTCAGTG-CTG-CTGACACCC  1069
      |||||||||| ||||||| ||| || ||| |||||||||
seq2  CTGGGAGCAGCCTTGGGCTTCAATGCCTGCCTGACACCC  1088