BAC Information

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BAC

Clone NameB6Ng01-209L18
Chromosome5 (Build37)
Map Location 147,943,229 - 148,089,330
singlet/doubletdoublet
Overlap geneGsh1, Pdx1
Upstream geneLOC433961, EG622306, 1700001J03Rik, LOC667121, Rnf6, Cdk8, Wasf3, LOC623198, LOC622924, 4930449I24Rik, LOC100041548, LOC100041554, LOC100041566, LOC100041578, EG667172, Gpr12, Usp12, 1700041I07Rik, Rpl21, Rasl11a, LOC100039699, LOC627218, Gtf3a, Mtif3, Lnx2, Rpo1-3
Downstream geneCdx2, EG231903, LOC622952, Flt3, Map1lc3-ps3, LOC384254, LOC100039805, Pan3, Flt1, LOC100039825, Pomp, Slc46a3, C130038G02Rik, LOC100041819
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209L18.bB6Ng01-209L18.g
ACCGA028276GA028277
length19169
definitionB6Ng01-209L18.b B6Ng01-209L18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,943,229 - 147,943,419)(148,089,262 - 148,089,330)
sequence
gaattcactcaaccaaacttttgctgttagctgaagaaaatttataaatc
agagaattaggcttcaataactgtgcctaccattacctctctcatactca
agttgaaataaaagcttttgataccttcttccatagtcttggcgagcaga
gcagattcagaataatactaatatatatgtaaacgtgtgtg
aagaggaattgtggggcaagtggattctgcccggggcaaattcgtggaaa
ggaagtgggggagggggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_147943229_147943419
seq2: B6Ng01-209L18.b_41_231

seq1  GAATTCACTCAACCAAACTTTTGCTGTTAGCTGAAGAAAATTTATAAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCAACCAAACTTTTGCTGTTAGCTGAAGAAAATTTATAAATC  50

seq1  AGAGAATTAGGCTTCAATAACTGTGCCTACCATTACCTCTCTCATACTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATTAGGCTTCAATAACTGTGCCTACCATTACCTCTCTCATACTCA  100

seq1  AGTTGAAATAAAAGCTTTTGATACCTTCTTCCATAGTCTTGGCGAGCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAAATAAAAGCTTTTGATACCTTCTTCCATAGTCTTGGCGAGCAGA  150

seq1  GCAGATTCAGAATAATACTAATATATATGTAAACGTGTGTG  191
      |||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATTCAGAATAATACTAATATATATGTAAACGTGTGTG  191

seq1: chr5_148089262_148089330
seq2: B6Ng01-209L18.g_72_140 (reverse)

seq1  CACCCCCTCCCCCACTTCCTTTCCACGAATTTGCCCCGGGCAGAATCCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCCTCCCCCACTTCCTTTCCACGAATTTGCCCCGGGCAGAATCCAC  50

seq1  TTGCCCCACAATTCCTCTT  69
      |||||||||||||||||||
seq2  TTGCCCCACAATTCCTCTT  69