BAC Information

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BAC

Clone NameB6Ng01-209M03
Chromosome5 (Build37)
Map Location 81,702,787 - 81,840,376
singlet/doubletdoublet
Overlap geneLphn3
Upstream geneLOC100039506, LOC100039384
Downstream geneEG433912
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209M03.bB6Ng01-209M03.g
ACCGA028294GA028295
length6511,143
definitionB6Ng01-209M03.b B6Ng01-209M03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,839,726 - 81,840,376)(81,702,787 - 81,703,923)
sequence
gaattcaggcaggagaaggccaaagtcctcaaatacagaccaaactgagt
taaataacatgatataagaatgaaataacttaaaaataaatttcaaatat
gtgggtgtttttcatttgacatatgtttacttccttaattttaagagttg
agccattaaatattaacagccctagaaattaatcaggcacattctaactc
ataaatgagttatgaaacctaataaatgttttagagcagtctttaggata
tagtctaaaatagtacatattgcacattgcaccttgctgattaattatgc
atttgtacatgtcagcagagctaaaatttattatttcagaaggtgaacga
taaaaaacaatgtagaattttctgagaatactgataagtaatttttaatt
aatatcaacattaaataatccagatctgatatatattctctattctccat
gcaaagttggcaaataagcaaaccaataaaaacattattggccataattt
tccagccttgtcgctgctgtgacttcctttctgcagttaatagcctggca
gttgataggacagctatataaacattgactaataagtattatcttctagt
gtaaaatcaaaatcacattcttttagaattaatggtgtgtatgtgtgtgt
g
gaattccactttcattgatttttgcatctcctgcacacccactttcttta
aatcaattaatggagctaaagcaccatcaagaacgtatttgtgcaacaac
tatcatgatgctttgcagtgaatgcatgatgcgcactcaagtcttctgtt
cccatagtaagcagggaatctaaatagctgcttcttgctttttcacttta
tgttaaataattactaaggcaaaggagtcctaaagtatccaaaatttata
atcaacctgagaaatatttcatttgtaaagtctacaatatagactgtcct
tatattccatatattgtccttatattaatattatattctttatatgtact
tatgttgtataaatataagtctttactatttgtttatgtaattagtgcct
tctcaaagttattttatcttttaatattttaaaatttatttcttcttact
ttatgtgtatgcgagtttttcgtgcaagtacatttatttatcttgtggtt
tatttttcctcagaagcaggagagggtgtgaggtcctcctgaactggagt
tataggctattgctagtcaccatatgggtgctgggaatcaaattcagggc
ttctatataatcaataagtctcgaggcctctgttagtcatttttggttat
aagtttgtatacaacattaaaaataatcacggctctgccctcctggtgaa
tgtatattctaatgaggtaaacagaaatcagctcagttaggaattaatct
tgacagtttatgagaatttatagccaaagttatactcacaccttttgttt
atagtttaataacaaaatatatattcaatatatcaacaaatttttgtgtg
tagtcaaacattgaattttactttatcttatcaattcatgttaaaggtga
atggatatagaatatttttaggttatgaagataattgttgtttatttatt
tatttataaagtcagacagagtttaacatttgaagtcacaaaattaatgg
acaaatttttactccatttctatccattgatagtaccgttttaggagcat
tgctaaaatcatttagatccaaaactacctttcttttttcagccagtgct
taccaacctttagccatcactgtcattagatgaagtccatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_81839726_81840376
seq2: B6Ng01-209M03.b_44_694 (reverse)

seq1  CACACACACATACACACCATTAATTCTAAAAGAATGTGATTTTGATTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACATACACACCATTAATTCTAAAAGAATGTGATTTTGATTTTA  50

seq1  CACTAGAAGATAATACTTATTAGTCAATGTTTATATAGCTGTCCTATCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGAAGATAATACTTATTAGTCAATGTTTATATAGCTGTCCTATCAA  100

seq1  CTGCCAGGCTATTAACTGCAGAAAGGAAGTCACAGCAGCGACAAGGCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAGGCTATTAACTGCAGAAAGGAAGTCACAGCAGCGACAAGGCTGG  150

seq1  AAAATTATGGCCAATAATGTTTTTATTGGTTTGCTTATTTGCCAACTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTATGGCCAATAATGTTTTTATTGGTTTGCTTATTTGCCAACTTTG  200

seq1  CATGGAGAATAGAGAATATATATCAGATCTGGATTATTTAATGTTGATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAGAATAGAGAATATATATCAGATCTGGATTATTTAATGTTGATAT  250

seq1  TAATTAAAAATTACTTATCAGTATTCTCAGAAAATTCTACATTGTTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAAAAATTACTTATCAGTATTCTCAGAAAATTCTACATTGTTTTTT  300

seq1  ATCGTTCACCTTCTGAAATAATAAATTTTAGCTCTGCTGACATGTACAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTTCACCTTCTGAAATAATAAATTTTAGCTCTGCTGACATGTACAAA  350

seq1  TGCATAATTAATCAGCAAGGTGCAATGTGCAATATGTACTATTTTAGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAATTAATCAGCAAGGTGCAATGTGCAATATGTACTATTTTAGACT  400

seq1  ATATCCTAAAGACTGCTCTAAAACATTTATTAGGTTTCATAACTCATTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCTAAAGACTGCTCTAAAACATTTATTAGGTTTCATAACTCATTTA  450

seq1  TGAGTTAGAATGTGCCTGATTAATTTCTAGGGCTGTTAATATTTAATGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTAGAATGTGCCTGATTAATTTCTAGGGCTGTTAATATTTAATGGC  500

seq1  TCAACTCTTAAAATTAAGGAAGTAAACATATGTCAAATGAAAAACACCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTCTTAAAATTAAGGAAGTAAACATATGTCAAATGAAAAACACCCA  550

seq1  CATATTTGAAATTTATTTTTAAGTTATTTCATTCTTATATCATGTTATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTGAAATTTATTTTTAAGTTATTTCATTCTTATATCATGTTATTT  600

seq1  AACTCAGTTTGGTCTGTATTTGAGGACTTTGGCCTTCTCCTGCCTGAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGTTTGGTCTGTATTTGAGGACTTTGGCCTTCTCCTGCCTGAATT  650

seq1  C  651
      |
seq2  C  651

seq1: chr5_81702787_81703923
seq2: B6Ng01-209M03.g_67_1209

seq1  GAATTCCACTTTCATTGATTTTTGCATCTCCTGCACACCCACTTTCTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTTTCATTGATTTTTGCATCTCCTGCACACCCACTTTCTTTA  50

seq1  AATCAATTAATGGAGCTAAAGCACCATCAAGAACGTATTTGTGCAACAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAATTAATGGAGCTAAAGCACCATCAAGAACGTATTTGTGCAACAAC  100

seq1  TATCATGATGCTTTGCAGTGAATGCATGATGCGCACTCAAGTCTTCTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATGATGCTTTGCAGTGAATGCATGATGCGCACTCAAGTCTTCTGTT  150

seq1  CCCATAGTAAGCAGGGAATCTAAATAGCTGCTTCTTGCTTTTTCACTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATAGTAAGCAGGGAATCTAAATAGCTGCTTCTTGCTTTTTCACTTTA  200

seq1  TGTTAAATAATTACTAAGGCAAAGGAGTCCTAAAGTATCCAAAATTTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAATAATTACTAAGGCAAAGGAGTCCTAAAGTATCCAAAATTTATA  250

seq1  ATCAACCTGAGAAATATTTCATTTGTAAAGTCTACAATATAGACTGTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACCTGAGAAATATTTCATTTGTAAAGTCTACAATATAGACTGTCCT  300

seq1  TATATTCCATATATTGTCCTTATATTAATATTATATTCTTTATATGTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTCCATATATTGTCCTTATATTAATATTATATTCTTTATATGTACT  350

seq1  TATGTTGTATAAATATAAGTCTTTACTATTTGTTTATGTAATTAGTGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTGTATAAATATAAGTCTTTACTATTTGTTTATGTAATTAGTGCCT  400

seq1  TCTCAAAGTTATTTTATCTTTTAATATTTTAAAATTTATTTCTTCTTACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAAGTTATTTTATCTTTTAATATTTTAAAATTTATTTCTTCTTACT  450

seq1  TTATGTGTATGCGAGTTTTTCGTGCAAGTACATTTATTTATCTTGTGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTGTATGCGAGTTTTTCGTGCAAGTACATTTATTTATCTTGTGGTT  500

seq1  TATTTTTCCTCAGAAGCAGGAGAGGGTGTGAGGTCCTCCTGAACTGGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTCCTCAGAAGCAGGAGAGGGTGTGAGGTCCTCCTGAACTGGAGT  550

seq1  TATAGGCTATTGCTAGTCACCATATGGGTGCTGGGAATCAAATTCAGGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGCTATTGCTAGTCACCATATGGGTGCTGGGAATCAAATTCAGGGC  600

seq1  TTCTATATAATCAATAAGTCTCGAGGCCTCTGTTAGTCATTTTTGGTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATATAATCAATAAGTCTCGAGGCCTCTGTTAGTCATTTTTGGTTAT  650

seq1  AAGTTTGTATACAACATTAAAAATAATCACGGCTCTGCCCTCCTGGTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTGTATACAACATTAAAAATAATCACGGCTCTGCCCTCCTGGTGAA  700

seq1  TGTATATTCTAATGAGGTAAACAGAAATCAGCTCAGTTAGGAATTAATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATTCTAATGAGGTAAACAGAAATCAGCTCAGTTAGGAATTAATCT  750

seq1  TGACAGTTTATGAGAATTTATAGCCAAAGTTATACTCACACC-TTTGTTT  799
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGACAGTTTATGAGAATTTATAGCCAAAGTTATACTCACACCTTTTGTTT  800

seq1  ATAGTTTAATAACAAAATATATATTCAATATATCAACAAA-TTTTGTGTG  848
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATAGTTTAATAACAAAATATATATTCAATATATCAACAAATTTTTGTGTG  850

seq1  TAGTCAAACATTGAATTTTACTTTATCTTATCAATTCATGTTAAAGGTGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAAACATTGAATTTTACTTTATCTTATCAATTCATGTTAAAGGTGA  900

seq1  ATGGATATAGAATA-TTTTAGGTTATGAAGATAAATTGTTGTTTA-TTAT  946
      |||||||||||||| ||||||||||||||||| |||||||||||| ||||
seq2  ATGGATATAGAATATTTTTAGGTTATGAAGAT-AATTGTTGTTTATTTAT  949

seq1  TTATTTATAAAGTCAGACAGAGTTTAACA-TTGAAGTCACAAAATTAAT-  994
      ||||||||||||||||||||||||||||| ||||||||||||||||||| 
seq2  TTATTTATAAAGTCAGACAGAGTTTAACATTTGAAGTCACAAAATTAATG  999

seq1  GACAAATTTTTTACTCCATTTCTATTCATTTGATAGTACGTTTTTAAGGA  1044
      |||||| |||||||||||||||||| || ||||||||||  |||| ||||
seq2  GACAAA-TTTTTACTCCATTTCTATCCA-TTGATAGTACCGTTTT-AGGA  1046

seq1  GCATTGCTAAAATCA-TTAGAATCAAAACTA-CTTTCTTTTTTGTAAGCC  1092
      ||||||||||||||| |||||  |||||||| ||||||||||  | ||||
seq2  GCATTGCTAAAATCATTTAGATCCAAAACTACCTTTCTTTTT--TCAGCC  1094

seq1  AGTGC-TACAAACC-TTAGGCATCACTGT-AATAGATG-AGTCCATATA  1137
      ||||| ||| |||| |||| ||||||||| | |||||| ||||||||||
seq2  AGTGCTTACCAACCTTTAGCCATCACTGTCATTAGATGAAGTCCATATA  1143