BAC Information

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BAC

Clone NameB6Ng01-210B11
Chromosome5 (Build37)
Map Location 66,541,249 - 66,732,580
singlet/doubletdoublet
Overlap geneBC013481, LOC626714, LOC666854, LOC100042394, Nsun7, Apbb2
Upstream geneKlhl5, Wdr19, Rfc1, Klb, Rpl9, Lias, Ugdh, 1110003E01Rik, 4930589O11Rik, Hip2, 9030416H16Rik, 1700022K14Rik, LOC384261, B3bp, LOC100041809, Rhoh, LOC626641, EG666827, Chrna9, 9130230L23Rik
Downstream geneUchl1, LOC100041876, 3732412D22Rik, LOC624662, Phox2b, Tmem33, Slc30a9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-210B11.bB6Ng01-210B11.g
ACCGA028524GA028525
length1,055446
definitionB6Ng01-210B11.b B6Ng01-210B11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,731,527 - 66,732,580)(66,541,249 - 66,541,700)
sequence
gaattcttttctgccctttgcttgaattgtgatcactgtttgcataattt
gtattgggattcttgctattcaaagtagtataatcagctgaataaggaca
cgccatcaccaggaggcctcccaccccagacctctgtgctttagccaata
ccagatgattgaagccttacacaagggagtatgaaaggtgttgatcccca
cagcatcctgcccaggcaccaaagatccaaaaagagggggagcgtaatta
attaccttcctctgagagtggaaaggagggcccggttattgccatttgac
tcctgtgagccatgcacagtgcttgctctagaaaggccttctccatgtgc
agtccacaagacacacctgcctgcagagcttgtgtggggtccagaagatg
gactgcttgtatagtacagcataaataccccaggcctccgcactccactc
ccccacactcctacactctgccccttcgtggtaacagttataattcacag
tatagcctgagacgcactggcctgggcggggcttcaattatgcagtgtga
tcagaagcagagcctcaagggaacatgcagggcttccctcctactttggg
gaagaagttgagtggccgctggttcagcgctgcctccatcactggctgag
gtgatacaaacatttttgtggatgatacgtacggatggttcagattcata
tcctgtatttcctagtagcgctctttccaggatcgaatgggaaggctttg
ttctgtaatgagctaaagagtgtaaacgttgttatgacaatcccttggct
ttcttgtttaatgtttatgctcctctaatcaacaaattgaaatcggatta
tgtctgttacacattataacgctattatccagtttaaatgcaggtctgaa
gaaataaaattgatttttttttttcttccatgcttctcgggattgcaccc
tgggttatttggtatgccggctgtattttccagtcagcttgtctggagga
ggtaaagataagtagctgaggccggatttttctccctctcttatatatat
gcaaa
tccgctggaaacaacaactaagcttccccgagggtggccttcagagataa
atgtctgcaggaagccccccccccccccccccccccgctctgctccagtt
aacactcaagcgagacgcccgtcaccaaaaactccgaaatctcaagctaa
taatccgcatctagtcacctgtgcctcaaaaaagaccaattacgtttttt
tcaactatacacacacacacacacacacacacacacacacacacggaaaa
agactcaagtctgcaggaaacaagatgcggctgaccataggattatctgc
tctccaaaagctgaagctttaaaaaaaaaaatctttttataaaccctttt
acttcccactaaagaaggaagaccatcaaatgatattttaatactaaggg
ggaaagaaatagagagataaagatgttgtttgtttgttttttccct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_66731527_66732580
seq2: B6Ng01-210B11.b_48_1102 (reverse)

seq1  TTTGCATAATATATTA-AGGGGGAGAAAAA--CCGCCTCAGCTACTTATC  47
      ||||||| |||||| | || ||||||||||  | ||||||||||||||||
seq2  TTTGCAT-ATATATAAGAGAGGGAGAAAAATCCGGCCTCAGCTACTTATC  49

seq1  TTTCCCTCCCCCAGACAAAGCTGACTGGAAAATACAGCCGGCATACC-AA  96
      ||| ||||| |||||| |||||||||||||||||||||||||||||| ||
seq2  TTTACCTCCTCCAGAC-AAGCTGACTGGAAAATACAGCCGGCATACCAAA  98

seq1  TAACCCAGGGTGCAATCCCGAGAAGCATGGAAG-AAAAAAAAAATCAATT  145
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TAACCCAGGGTGCAATCCCGAGAAGCATGGAAGAAAAAAAAAAATCAATT  148

seq1  TTATTTCTTTCAGACCTGCATTTAAACTGGATAATAGCCGTTATAATGTG  195
      ||||||| ||||||||||||||||||||||||||||| ||||||||||||
seq2  TTATTTC-TTCAGACCTGCATTTAAACTGGATAATAG-CGTTATAATGTG  196

seq1  TAACAGACATAATCCGATTTCAATTTGTTTGATTAGAGGAGCATAAACAT  245
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TAACAGACATAATCCGATTTCAATTTG-TTGATTAGAGGAGCATAAACAT  245

seq1  TAAACAAGAAAGCCAAGGGATTGTCATAACAACGTTTACACTC-TTAGCT  294
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TAAACAAGAAAGCCAAGGGATTGTCATAACAACGTTTACACTCTTTAGCT  295

seq1  CATTACAGAACAAAGCCTTCCCATTCGATCCTGGAAAGAGCGCTACTAGG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACAGAACAAAGCCTTCCCATTCGATCCTGGAAAGAGCGCTACTAGG  345

seq1  AAATACAGGATATGAATCTGAACCATCCGTACGTATCATCCACAAAAATG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAGGATATGAATCTGAACCATCCGTACGTATCATCCACAAAAATG  395

seq1  TTTGTATCACCTCAGCCAGTGATGGAGGCAGCGCTGAACCAGCGGCCACT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATCACCTCAGCCAGTGATGGAGGCAGCGCTGAACCAGCGGCCACT  445

seq1  CAACTTCTTCCCCAAAGTAGGAGGGAAGCCCTGCATGTTCCCTTGAGGCT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTCTTCCCCAAAGTAGGAGGGAAGCCCTGCATGTTCCCTTGAGGCT  495

seq1  CTGCTTCTGATCACACTGCATAATTGAAGCCCCGCCCAGGCCAGTGCGTC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCTGATCACACTGCATAATTGAAGCCCCGCCCAGGCCAGTGCGTC  545

seq1  TCAGGCTATACTGTGAATTATAACTGTTACCACGAAGGGGCAGAGTGTAG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCTATACTGTGAATTATAACTGTTACCACGAAGGGGCAGAGTGTAG  595

seq1  GAGTGTGGGGGAGTGGAGTGCGGAGGCCTGGGGTATTTATGCTGTACTAT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTGGGGGAGTGGAGTGCGGAGGCCTGGGGTATTTATGCTGTACTAT  645

seq1  ACAAGCAGTCCATCTTCTGGACCCCACACAAGCTCTGCAGGCAGGTGTGT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCAGTCCATCTTCTGGACCCCACACAAGCTCTGCAGGCAGGTGTGT  695

seq1  CTTGTGGACTGCACATGGAGAAGGCCTTTCTAGAGCAAGCACTGTGCATG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGGACTGCACATGGAGAAGGCCTTTCTAGAGCAAGCACTGTGCATG  745

seq1  GCTCACAGGAGTCAAATGGCAATAACCGGGCCCTCCTTTCCACTCTCAGA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACAGGAGTCAAATGGCAATAACCGGGCCCTCCTTTCCACTCTCAGA  795

seq1  GGAAGGTAATTAATTACGCTCCCCCTCTTTTTGGATCTTTGGTGCCTGGG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGTAATTAATTACGCTCCCCCTCTTTTTGGATCTTTGGTGCCTGGG  845

seq1  CAGGATGCTGTGGGGATCAACACCTTTCATACTCCCTTGTGTAAGGCTTC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATGCTGTGGGGATCAACACCTTTCATACTCCCTTGTGTAAGGCTTC  895

seq1  AATCATCTGGTATTGGCTAAAGCACAGAGGTCTGGGGTGGGAGGCCTCCT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATCTGGTATTGGCTAAAGCACAGAGGTCTGGGGTGGGAGGCCTCCT  945

seq1  GGTGATGGCGTGTCCTTATTCAGCTGATTATACTACTTTGAATAGCAAGA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATGGCGTGTCCTTATTCAGCTGATTATACTACTTTGAATAGCAAGA  995

seq1  ATCCCAATACAAATTATGCAAACAGTGATCACAATTCAAGCAAAGGGCAG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAATACAAATTATGCAAACAGTGATCACAATTCAAGCAAAGGGCAG  1045

seq1  AAAAGAATTC  1054
      ||||||||||
seq2  AAAAGAATTC  1055

seq1: chr5_66541249_66541700
seq2: B6Ng01-210B11.g_68_518

seq1  GAATTCTCCGCTGGAAACAACAACTAAGCTTCCCCGAGGGTGGCCTTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCGCTGGAAACAACAACTAAGCTTCCCCGAGGGTGGCCTTCAG  50

seq1  AGATAAATGTCTGCAGGAAGCCCCCCCCCCCCCCCCCCCCCCCGCTCTGC  100
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGATAAATGTCTGCAGGAAG-CCCCCCCCCCCCCCCCCCCCCCGCTCTGC  99

seq1  TCCAGTTAACACTCAAGCGAGACGCCCGTCACCAAAAACTCCGAAATCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTTAACACTCAAGCGAGACGCCCGTCACCAAAAACTCCGAAATCTC  149

seq1  AAGCTAATAATCCGCATCTAGTCACCTGTGCCTCAAAAAAGACCAATTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAATAATCCGCATCTAGTCACCTGTGCCTCAAAAAAGACCAATTAC  199

seq1  GTTTTTTTCAACTATACACACACACACACACACACACACACACACACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTTCAACTATACACACACACACACACACACACACACACACACACA  249

seq1  CGGAAAAAGACTCAAGTCTGCAGGAAACAAGATGCGGCTGACCATAGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAAAAAGACTCAAGTCTGCAGGAAACAAGATGCGGCTGACCATAGGAT  299

seq1  TATCTGCTCTCCAAAAGCTGAAGCTTTAAAAAAAAAAATCTTTTTATAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGCTCTCCAAAAGCTGAAGCTTTAAAAAAAAAAATCTTTTTATAAA  349

seq1  CCCTTTAACTTCCCACTAAAGAAGGAAGACGATCAAATGAGAGATTAATA  400
      |||||| ||||||||||||||||||||||| ||||||||| |  ||||||
seq2  CCCTTTTACTTCCCACTAAAGAAGGAAGACCATCAAATGATATTTTAATA  399

seq1  CTAAGGGGGAAAGAAATAGAGAGAGAAAGATGTTGTTTGTTTGTTTTTTC  450
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CTAAGGGGGAAAGAAATAGAGAGATAAAGATGTTGTTTGTTTGTTTTTTC  449

seq1  CC  452
      ||
seq2  CC  451