BAC Information

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BAC

Clone NameB6Ng01-210E16
Chromosome5 (Build37)
Map Location 79,470,037 - 79,471,237
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039398, Mthfr-ps1, EG384187
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-210E16.bB6Ng01-210E16.g
ACCGA028669GA028670
length1,211449
definitionB6Ng01-210E16.b B6Ng01-210E16.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaaatatgggccactgagctttataaagatttatttctattaatg
ttaattttcatgtgtatgtctttgtatgtgcacccacctctgcctataaa
ggccagatcttagtgctatcagatcaattgcattttacttttaactttct
caggttcaatagaaataataaaatgtgcaataagaaacctaatttctagt
cagagaagcaaattgatagattgactacaatttctaattatttctatggc
actaaataggaattgcatatttatataaataggggatgcagaaaatggag
actcaaaaatactttctaaaaatagaacattttgaaattctagtattttg
agtttagtttcatcaaaaatataaattactttattaaatttacctgagag
atatattatatttctcatgtatatacgtttgcattttattatgttacata
ttaaatataaattacatatagtaaataatatatatgaaagatgcatatat
gtgtacatatgtacacataatataaatgtaaacatagtatataatatata
catatatttgaatgtatataaatagacatgcatatgtatgtatataatta
tgtactttaattttttggtctagaactttcaaatatattaaaactagcca
cattttatgtcaacaatttaaaaatattatataacaacttcttcaatcaa
tttagagttagtgagttagaacccaagatgattatataggaataatcatt
ttaggaagccgtccaaatttgccctgggagaaaatgctcaggttatagtt
ccttgaagtcgttatcgcaatcagatttcttagagttagcctacctaaac
taggatatctttctggttttttgtttttgttttgttcttgtttctagtgc
gcatgttctcaagtaacattgaggatgatgatcgatgagtagtttgtcga
ccattcgagcctgtttctttcattcttctggactggtacatcactagcct
ttagacattacttgtactttccatcccttctagggcattgacattactat
tgcatttcttgattcagcggtacgtatgactaatgtatagcctattattg
atttatatgatctggtttgcatacgtcatgcgaaccattgtctacaacag
aaactttaccacgcctctctgaatcatggaattcaaaggttactgggtat
tttgtcaagcc

gaattctcacctgaggaaactgaatggctgacaagtcctgaaaaaatgtt
cagcatccttaattatcagggaaattcaaatcaaaagagccctgaaattc
catctcacaatagtcagaatggctaagatcaagaattcaggtgacagcag
atgctggcgaggatgtggagaaagaggaacacttctccattgctggtggg
attgcaagattgtacaaccactctggaaatcaatctggaggttcctccga
aaattggacatagtactgcaggaggattccacaatacctctcctgggcat
atatgcaaaggatgttctaactgggaagaaagacacatgctccactatgt
tcatagcggccttatttataatagccagaagctttaaagaacccagatgc
ccctcaacagaggaatgaatgcagaaaatctggtacatttacacaatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_79470037_79471237
seq2: B6Ng01-210E16.b_39_1249

seq1  GAATTCAAATATTGGCCAACTGAGCTTTATAAAGATTTATTTCTATTAAT  50
      |||||||||||| |||| ||||||||||||||||||||||||||||||||
seq2  GAATTCAAATATGGGCC-ACTGAGCTTTATAAAGATTTATTTCTATTAAT  49

seq1  GTTAATTTTCATGTGTATGTCTTTGTATGTGCACCCACCTCTGCCTATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATTTTCATGTGTATGTCTTTGTATGTGCACCCACCTCTGCCTATAA  99

seq1  AGGCCAGATCTTAATGCTTTCAAATCAATTGCATTTTACTTTTAACTTTC  150
      ||||||||||||| |||| ||| |||||||||||||||||||||||||||
seq2  AGGCCAGATCTTAGTGCTATCAGATCAATTGCATTTTACTTTTAACTTTC  149

seq1  TCAGTTTCAATAGAAATAATAAAATGTGCAATAAGAAACCTAATTTCTAG  200
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTTCAATAGAAATAATAAAATGTGCAATAAGAAACCTAATTTCTAG  199

seq1  TCAGAGAAGCAAATTGATAGATTGACTACAATTTCTAATTATTTCTATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGAAGCAAATTGATAGATTGACTACAATTTCTAATTATTTCTATGG  249

seq1  CACTAAATAGGAATTGCATATTTATATAAATAGCAAATGCAGAAAATGGA  300
      |||||||||||||||||||||||||||||||||   ||||||||||||||
seq2  CACTAAATAGGAATTGCATATTTATATAAATAGGGGATGCAGAAAATGGA  299

seq1  GACTCAAAAATACTTTCTAAAAATAGAACATTTTGAAATTCTAGTATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAAAAATACTTTCTAAAAATAGAACATTTTGAAATTCTAGTATTTT  349

seq1  GAGTTTAGTTTCATCAAAAATATAAATTACTTTATTAAATTTACCTGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTAGTTTCATCAAAAATATAAATTACTTTATTAAATTTACCTGAGA  399

seq1  GATATATTATATTTCTCATGTATATACATTTGCATTTTATTATGTTACAT  450
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GATATATTATATTTCTCATGTATATACGTTTGCATTTTATTATGTTACAT  449

seq1  ATTAAATATAAATTACATATAGTAAATAATATATATGAAAGATGCATATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATATAAATTACATATAGTAAATAATATATATGAAAGATGCATATA  499

seq1  TGTGTACATATGTACACATAATATAAATGTAAACATAGTATATAATATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTACATATGTACACATAATATAAATGTAAACATAGTATATAATATAT  549

seq1  ACATATATTTGAATGTATATAAATAGACATGCATATATATGTATATAATT  600
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACATATATTTGAATGTATATAAATAGACATGCATATGTATGTATATAATT  599

seq1  ATGTACTTTAATTTTTTGGTCTAGAACTTTCAAATATATTAAAACTAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACTTTAATTTTTTGGTCTAGAACTTTCAAATATATTAAAACTAGCC  649

seq1  ACATTTTATGTCAACAATTTAAAAATATTATATAACAACTTCTTCAATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTATGTCAACAATTTAAAAATATTATATAACAACTTCTTCAATCA  699

seq1  ATTTAGAGTTAGTGAGTTAGAACCCAAAATGATTATATAGGAATAATCAT  750
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATTTAGAGTTAGTGAGTTAGAACCCAAGATGATTATATAGGAATAATCAT  749

seq1  TTTAGGAAGCCATCCAAATTTTCCCTGGGAGAAAATGCTCAGGTTATAGT  800
      ||||||||||| ||||||||| ||||||||||||||||||||||||||||
seq2  TTTAGGAAGCCGTCCAAATTTGCCCTGGGAGAAAATGCTCAGGTTATAGT  799

seq1  TCCTTGAAGTCGTTATCCCAATCAGATTTCTTAGAGTTAGCCTACCTAAA  850
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TCCTTGAAGTCGTTATCGCAATCAGATTTCTTAGAGTTAGCCTACCTAAA  849

seq1  CTAGGATTTCTTTCTGGTTTTTTGTTTTTGTTTTTGTTCTTGTTTTTAAT  900
      ||||||| |||||||||||||||||||||| |||||||||||||| || |
seq2  CTAGGATATCTTTCTGGTTTTTTGTTTTTG-TTTTGTTCTTGTTTCTAGT  898

seq1  GTGTATGTTCTCAAGTTACATTGAGGATTAT-ATCGATGAGTAGTTTGT-  948
      | | |||||||||||| ||||||||||| || ||||||||||||||||| 
seq2  GCGCATGTTCTCAAGTAACATTGAGGATGATGATCGATGAGTAGTTTGTC  948

seq1  GACC-TTCGAGCCTG-TTCTT--CTTTTTCTGGACTGTTACATCACT-GC  993
      |||| |||||||||| |||||   || |||||||||| ||||||||| ||
seq2  GACCATTCGAGCCTGTTTCTTTCATTCTTCTGGACTGGTACATCACTAGC  998

seq1  CTTTTGACATTACTT-TACTT--CCTCC--TTTAGTACATAGAACAATTC  1038
      |||| |||||||||| |||||  | |||  | |||  ||| | ||| | |
seq2  CTTTAGACATTACTTGTACTTTCCATCCCTTCTAGGGCATTG-ACATTAC  1047

seq1  ATATGCATT--TTTATT-AGC-GTACTAATGAATAAATGTAATAACTTTT  1084
         ||||||  || ||| ||| ||||  |||| | ||||||    || ||
seq2  TATTGCATTTCTTGATTCAGCGGTACGTATGACT-AATGTATAGCCTATT  1096

seq1  AGTGGTATTATATGATCT-GTTTCCATCCGTCATACAGACAATT-TTTAC  1132
      | || | ||||||||||| |||| ||| |||||| |  || ||| | |||
seq2  ATTGAT-TTATATGATCTGGTTTGCATACGTCATGCGAACCATTGTCTAC  1145

seq1  AAAAGAAAAAATTTACAACGCTCTTTAAGTATACTATGATTAAAAGGTTA  1182
      || ||  ||| ||||| |||| || |  | ||  |   ||| ||||||||
seq2  AACAG--AAACTTTACCACGC-CTCTCTGAATCATGGAATTCAAAGGTTA  1192

seq1  CATGGGTATTTTGT-AAGCC  1201
      | |||||||||||| |||||
seq2  C-TGGGTATTTTGTCAAGCC  1211


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