BAC Information

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BAC

Clone NameB6Ng01-210O11
Chromosome5 (Build37)14 (Build37)
Map Location 97,844,495 - 97,844,74429,545,555 - 29,545,938
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneFras1, Anxa3, EG666266, LOC670358, Bmp2k, Paqr3, LOC100040598, EG433923, EG666293, C80008
Downstream geneGk2, Antxr2, EG435856, LOC666315, LOC666320, LOC666326, Prdm8, Fgf5, 1700007G11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-210O11.bB6Ng01-210O11.g
ACCGA029119GA029120
length662225
definitionB6Ng01-210O11.b B6Ng01-210O11.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(97,844,495 - 97,844,744)(29,545,555 - 29,545,938)
sequence
gaattcagtcctgcatattccatgtaaaattgccaggcatacacttctaa
tcccattgctggagaggtatagatgatctatctatctatctatctatcta
tctatctatctatctatctatctatctatccatcatccatccatccatcc
atccatccatccatccatccatccatccatccatccatccatctatctat
ctatctatctatctatctatctatctatctatctatctatctatctatct
atctatctatctatctatctaattgatcgatcttccttctaacctatcta
tctatctatctatctatctatctatctatctatctatctatctatctatc
tatcatctatatatatatgtgtgtgtgtgtgtatatgtatgtatgtccgt
cctttcgtccatctggacggacagcctagataaaccagtggttgacctgc
atactcagagacactgcctgaagaaaaaatgaatgtaacaagctaaataa
tacattactgactggcgggatatatatacacatacatacgaacgcctgcc
tgcacgcatgggtaggcacgcaggaagtatgtgtgtgtgtgtatctatct
atctatctatctatctatctatctatctatctatctatctatctacatat
atatatatatat
ggacttttaaactaatcattgtcaggtgatgctagcacacacctttaatg
ccagcagtcaggagacagaagcaaaggaatctctgagttagaggccagcc
tgctatacagagtcagcaggacagccagggctacacagagaaagcctgtc
tcaaaaaaggaaagaaaaaagagagagagagagagagagagagagagaga
gagagagagagagagagagagagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_97844495_97844744
seq2: B6Ng01-210O11.b_233_690 (reverse)

seq1  TGTAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAG-  49
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGTAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGA  50

seq1  ---------------ACAT-----CTG-----------------------  56
                     ||||     |||                       
seq2  TAGATACACACACACACATACTTCCTGCGTGCCTACCCATGCGTGCAGGC  100

seq1  -----------------------------------GTCAGGAA-------  64
                                         ||||| ||       
seq2  AGGCGTTCGTATGTATGTGTATATATATCCCGCCAGTCAGTAATGTATTA  150

seq1  -----CTTG---------------CTT-----------------TAT--A  75
           ||||               |||                 |||  |
seq2  TTTAGCTTGTTACATTCATTTTTTCTTCAGGCAGTGTCTCTGAGTATGCA  200

seq1  G----ACC------------AGGCTGGCCTT-------------------  90
      |    |||            |||||| || |                   
seq2  GGTCAACCACTGGTTTATCTAGGCTGTCCGTCCAGATGGACGAAAGGACG  250

seq1  GA-----------------------ACTCTGAGATTTCTTCATGCTCTAT  117
      ||                       || |  | || | |  ||| |  ||
seq2  GACATACATACATATACACACACACACACATATATATATAGATGATAGAT  300

seq1  GTATGTGTAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAG  167
        ||   |||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAG  350

seq1  GTAGG-------------------------TAGGTAGATAGGTAGATAGG  192
       ||||                         ||| ||||||| ||||||| 
seq2  ATAGGTTAGAAGGAAGATCGATCAATTAGATAGATAGATAGATAGATAGA  400

seq1  TAGATAGGTAGATAGGTAGATAGATAGATAGATAGATAGATAGATAGATA  242
      ||||||| ||||||| ||||||||||||||||||||||||||||||||||
seq2  TAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATA  450

seq1  GATAGATG  250
      ||||||||
seq2  GATAGATG  458

seq1: chr14_29545555_29545938
seq2: B6Ng01-210O11.g_188_296 (reverse)

seq1  TTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  50

seq1  CTCTTTCTTTCTTTTTATTCTTTTTTTTCATTAGATA--TTTTCTTTATT  98
      |||      ||||||  ||||||  |||  | ||| |   ||||| | | 
seq2  CTC------TCTTTT--TTCTTTCCTTTTTTGAGACAGGCTTTCTCTGTG  92

seq1  TACATTTCAAATGCTAACCCGAAAGTTCCTTATACCCTCCCCCGGCCCTG  148
      ||     |    |||  || |                             
seq2  TA----GCCCTGGCTGTCCTG-----------------------------  109

seq1  CTCCCCTACCTACCCACTCCCACTTCTTGGCCCTGGCGTTCCCCTATACT  198
                                                        
seq2  --------------------------------------------------  109

seq1  GGGCCATTATTTTTAGGTTTGCAATCTCACATTTTATATGCTTATTTTTT  248
                                                        
seq2  --------------------------------------------------  109

seq1  CATTTATCTTTGAGATTATAATAACATCATTTCTCCCTTCCCTTTCCTTC  298
                                                        
seq2  --------------------------------------------------  109

seq1  CAACCTCCTCCTCTTTTTTTTTTTTTTTTTGTTGTTGTTTTGTTTTTTTC  348
                                                        
seq2  --------------------------------------------------  109

seq1  AAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTG  384
                                          
seq2  ------------------------------------  109