BAC Information

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BAC

Clone NameB6Ng01-210O18
Chromosome5 (Build37)
Map Location 45,968,980 - 46,119,812
singlet/doubletdoublet
Overlap gene9630031F12Rik, 9630001P10Rik, 1600023N17Rik, Lcorl, LOC100041576
Upstream geneLdb2, LOC100041481, LOC100040737, Qdpr, EG624224, Lap3, LOC100040762, Med28
Downstream geneEG666103
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-210O18.bB6Ng01-210O18.g
ACCGA029133GA029134
length1,0941,104
definitionB6Ng01-210O18.b B6Ng01-210O18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,968,980 - 45,970,083)(46,118,703 - 46,119,812)
sequence
gaattcaaaaccagcctggcaacaaaatgaaatgctatttctaaatacag
agtaaaattaaaactaggaattcaactcagtggtagagtgagcgtgtgcc
gggccatcggcttcattcctgggatagcatccaagtgtacacaggcaaac
acaagcatgaaatgccaaaaacacatttataagtgggctggagagacaca
tcacaaattttagggcagccaagatgacatagtgagaccctgtcacaaaa
acttattttaatataaaagtaatgttccataggatttatagtgtaaagta
aaatgtacgaaaacaaatatccagagggcagggaagaagagatggaaaat
aattgctataacccttttatatgttaagaaatatattatttgaaagaggc
tgtgatcaatttaaagaggcatattattatttgtagtgcaaacacgagat
ctccaccagaaaaaaaaaaaaagcataagaaatcaaaagtggagataaaa
tgaaataccaaaagtacttaatgtgtcaaaaataaacagttaaagtcggg
acagtcaataaatgataggaaggtaaaaatgtgaagttagtagacttaat
cattaaataaaatataaatgctatgtattatagacattcaaattgaacac
acaagtagaacacagctaaatcacttatgttattcagtggatttgggaca
ttagcacttgtttggtagctgccaagtgtattcctctgaacttacagaaa
agtacctattatcctatattaaattcctgctaaactgtccagaggaccta
tgagccccaggaggaatcgtaactggtacaaatgagatgggaaatgcaga
caggttaagcagacctcgggagagctccataaatctgtttccatttcctt
tccaacaagcactgtgtgcaatgttaattacaggacatgcactaagttcc
atctgccaagatagcatgagaatgtcctctactcttgtgacaggacagat
attcagttcttcaggccatctagttcacatctgccattgctctttagctc
tttagttaagggtagtattagatgtgcaatgctcaaagaactaa

gaattcctttaatatattttattcttcttgctactggtattgaatttaaa
aatatgagcttctatattgttgactagcaaacatgggtcttagttaaagc
tagatgtgtattagcttctgtggtggggcatttttcagcacttgaaattt
agtatttaggtaagtaatacctttagttttcctgtgcttttccaaggctt
ttaaaaccagctaaaagtaggtttaatttttcaaaagcttccttttatct
tttatattcttactaggttaaaatgccttcagcttaatctcagaaaaaca
tactctcttatttatatggaacctaaatttgataagtttcttcatgatta
tgtaaacttttcttttaatattaaattttcttttactacctagcaaagga
ttttaaataaaaataagatttcactccttatctccttatttgaattaaca
aggactgatcatataaaatatggctaagtgtcctactttacaaaaacttt
tatttcttctgaagcatttttcattaaaggttattaatagtatttccaga
gttgttaatattgccagcgtgttgatgtaataatatgtgatcatctgctt
ttgtattgtgaaagcctttgctttgactcctgtgctttgtcataggaaat
tatttaccagtgcttcattctgtttctgctaaaaaaataaccaagatgtc
cttgcagttccatctataggagtcaggagtccagcaatatcaaaatacat
cattcagatgctgtcaagaattataactccttatgatattttttgctgta
attcatttttttgtttgatttttatttttagttcaactgttgatgcaaaa
tcagaggaagctactaaaatggaaaaaggaaaatcagcattaagcaaagt
tttggaatctttgtgcatacatcaccatcaacaagttttggctatgttga
aatttctagtcccagagcagatgctgcttcttctttgctgttgtaattca
tcatgtgctatgtcttcagaatctcaaagctccttatttgagatgatttc
atgatctgttctgtagctgtgatatagactgcagaagaagggtgttacga
atga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_45968980_45970083
seq2: B6Ng01-210O18.b_50_1143

seq1  GAATTCAAAACCAGCCTGGCAACAAAATGAAATGCTATTTCTAAATACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAACCAGCCTGGCAACAAAATGAAATGCTATTTCTAAATACAG  50

seq1  AGTAAAATTAAAACTAGGAATTCAACTCAGTGGTAGAGTGAGCGTGTGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAATTAAAACTAGGAATTCAACTCAGTGGTAGAGTGAGCGTGTGCC  100

seq1  GGGCCATCGGCTTCATTCCTGGGATAGCATCCAAGTGTACACAGGCAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCATCGGCTTCATTCCTGGGATAGCATCCAAGTGTACACAGGCAAAC  150

seq1  ACAAGCATGAAATGCCAAAAACACATTTATAAGTGGGCTGGAGAGACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCATGAAATGCCAAAAACACATTTATAAGTGGGCTGGAGAGACACA  200

seq1  TCACAAATTTTAGGGCAGCCAAGATGACATAGTGAGACCCTGTCACAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAATTTTAGGGCAGCCAAGATGACATAGTGAGACCCTGTCACAAAA  250

seq1  ACTTATTTTAATATAAAAGTAATGTTCCATAGGATTTATAGTGTAAAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATTTTAATATAAAAGTAATGTTCCATAGGATTTATAGTGTAAAGTA  300

seq1  AAATGTACGAAAACAAATATCCAGAGGGCAGGGAAGAAGAGATGGAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTACGAAAACAAATATCCAGAGGGCAGGGAAGAAGAGATGGAAAAT  350

seq1  AATTGCTATAACCCTTTTATATGTTAAGAAATATATTATTTGAAAGAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCTATAACCCTTTTATATGTTAAGAAATATATTATTTGAAAGAGGC  400

seq1  TGTGATCAATTTAAAGAGGCATATTATTATTTGTAGTGCAAACACGAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATCAATTTAAAGAGGCATATTATTATTTGTAGTGCAAACACGAGAT  450

seq1  CTCCACCAGAAAAAAAAAAAAAGCATAAGAAATCAAAAGTGGAGATAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACCAGAAAAAAAAAAAAAGCATAAGAAATCAAAAGTGGAGATAAAA  500

seq1  TGAAATACCAAAAGTACTTAATGTGTCAAAAATAAACAGTTAAAGTCGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATACCAAAAGTACTTAATGTGTCAAAAATAAACAGTTAAAGTCGGG  550

seq1  ACAGTCAATAAATGATAGGAAGGTAAAAATGTGAAGTTAGTAGACTTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCAATAAATGATAGGAAGGTAAAAATGTGAAGTTAGTAGACTTAAT  600

seq1  CATTAAATAAAATATAAATGCTATGTATTATAGACATTCAAATTGAACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAATAAAATATAAATGCTATGTATTATAGACATTCAAATTGAACAC  650

seq1  ACAAGTAGAACACAGCTAAATCACTTATGTTATTCAGTGGATTTGGGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTAGAACACAGCTAAATCACTTATGTTATTCAGTGGATTTGGGACA  700

seq1  TTAGCACTTGTTTGGTAGCTGCCAAGTGTATTCCTCTGAACTTACAGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCACTTGTTTGGTAGCTGCCAAGTGTATTCCTCTGAACTTACAGAAA  750

seq1  AGTACCTATTATCCTATATTAAATTCCTGCTAAACTGTCCAGAGGACCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCTATTATCCTATATTAAATTCCTGCTAAACTGTCCAGAGGACCTA  800

seq1  TGAGCCCCAGGAGGAATCGTAACTGGTACAAATGAGATGGGAAATGCAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCCCAGGAGGAATCGTAACTGGTACAAATGAGATGGGAAATGCAGA  850

seq1  CAGGTTAAGCAGACCTCGGGAGAGCTCCATAAATCTGTTTCCA-TTCCTT  899
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CAGGTTAAGCAGACCTCGGGAGAGCTCCATAAATCTGTTTCCATTTCCTT  900

seq1  CCCAAACAAGCACTGTGTGCAAATGTTAATTACAGGACATGCACTAAGTT  949
       || |||||||||||||||| |||||||||||||||||||||||||||||
seq2  TCC-AACAAGCACTGTGTGC-AATGTTAATTACAGGACATGCACTAAGTT  948

seq1  CCATCTGCCAAGATAGCATGAGAATGTCCTCTACTCTTGTGACAGGACAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTGCCAAGATAGCATGAGAATGTCCTCTACTCTTGTGACAGGACAG  998

seq1  ATATTCAGTCTTCCAGGCCAATCTAGTCCACATCCTGCCATTTGCTCCTT  1049
      |||||||||  | |||||| ||||||| ||||| |||||| ||||| |||
seq2  ATATTCAGTTCTTCAGGCC-ATCTAGTTCACAT-CTGCCA-TTGCT-CTT  1044

seq1  TAGCTCCTTTAGGTAAGGGTAGTATTTAGGATGTGCCAAAGGCTCAAAGA  1099
      ||||| |||||| |||||||||||||   |||||||  || |||||||||
seq2  TAGCT-CTTTAGTTAAGGGTAGTATT--AGATGTGC--AATGCTCAAAGA  1089

seq1  ACTAA  1104
      |||||
seq2  ACTAA  1094


seq1: chr5_46118703_46119812
seq2: B6Ng01-210O18.g_65_1168 (reverse)

seq1  TCATTCTGTAAACACCCTCTTTCTGCCAGTCTATATTCACAGCTACAGAA  50
      |||||| || ||||||||  ||||| ||||||||| ||||||||||||||
seq2  TCATTC-GT-AACACCCTTCTTCTG-CAGTCTATA-TCACAGCTACAGAA  46

seq1  CAGACCATGAAAACCATCCTCCAATAGGGGCTTTTGAGATTCTGAAGACA  100
      |||| |||| ||| ||| ||| |||| ||   ||||||||||||||||||
seq2  CAGATCATG-AAATCAT-CTCAAATAAGGAGCTTTGAGATTCTGAAGACA  94

seq1  TAGCACATGATGAATTACAACAGCAAAG-AGAAGCAGCATTCTGCTCTTG  149
      |||||||||||||||||||||||||||| |||||||||| |||||||| |
seq2  TAGCACATGATGAATTACAACAGCAAAGAAGAAGCAGCA-TCTGCTCTGG  143

seq1  GACTAGAAATTTCAACATAGCCAAAACTTGTTGATGGTGATGTATGCACA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGAAATTTCAACATAGCCAAAACTTGTTGATGGTGATGTATGCACA  193

seq1  AAGATTCCAAAACTTTGCTTAATGCTGATTTTCCTTTTTCCATTTTAGTA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTCCAAAACTTTGCTTAATGCTGATTTTCCTTTTTCCATTTTAGTA  243

seq1  GCTTCCTCTGATTTTGCATCAACAGTTGAACTAAAAATAAAAATCAAACA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTCTGATTTTGCATCAACAGTTGAACTAAAAATAAAAATCAAACA  293

seq1  AAAAAATGAATTACAGCAAAAAATATCATAAGGAGTTATAATTCTTGACA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATGAATTACAGCAAAAAATATCATAAGGAGTTATAATTCTTGACA  343

seq1  GCATCTGAATGATGTATTTTGATATTGCTGGACTCCTGACTCCTATAGAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTGAATGATGTATTTTGATATTGCTGGACTCCTGACTCCTATAGAT  393

seq1  GGAACTGCAAGGACATCTTGGTTATTTTTTTAGCAGAAACAGAATGAAGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTGCAAGGACATCTTGGTTATTTTTTTAGCAGAAACAGAATGAAGC  443

seq1  ACTGGTAAATAATTTCCTATGACAAAGCACAGGAGTCAAAGCAAAGGCTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTAAATAATTTCCTATGACAAAGCACAGGAGTCAAAGCAAAGGCTT  493

seq1  TCACAATACAAAAGCAGATGATCACATATTATTACATCAACACGCTGGCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAATACAAAAGCAGATGATCACATATTATTACATCAACACGCTGGCA  543

seq1  ATATTAACAACTCTGGAAATACTATTAATAACCTTTAATGAAAAATGCTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAACAACTCTGGAAATACTATTAATAACCTTTAATGAAAAATGCTT  593

seq1  CAGAAGAAATAAAAGTTTTTGTAAAGTAGGACACTTAGCCATATTTTATA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGAAATAAAAGTTTTTGTAAAGTAGGACACTTAGCCATATTTTATA  643

seq1  TGATCAGTCCTTGTTAATTCAAATAAGGAGATAAGGAGTGAAATCTTATT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCAGTCCTTGTTAATTCAAATAAGGAGATAAGGAGTGAAATCTTATT  693

seq1  TTTATTTAAAATCCTTTGCTAGGTAGTAAAAGAAAATTTAATATTAAAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTAAAATCCTTTGCTAGGTAGTAAAAGAAAATTTAATATTAAAAG  743

seq1  AAAAGTTTACATAATCATGAAGAAACTTATCAAATTTAGGTTCCATATAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTTACATAATCATGAAGAAACTTATCAAATTTAGGTTCCATATAA  793

seq1  ATAAGAGAGTATGTTTTTCTGAGATTAAGCTGAAGGCATTTTAACCTAGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAGAGTATGTTTTTCTGAGATTAAGCTGAAGGCATTTTAACCTAGT  843

seq1  AAGAATATAAAAGATAAAAGGAAGCTTTTGAAAAATTAAACCTACTTTTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATATAAAAGATAAAAGGAAGCTTTTGAAAAATTAAACCTACTTTTA  893

seq1  GCTGGTTTTAAAAGCCTTGGAAAAGCACAGGAAAACTAAAGGTATTACTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTTTTAAAAGCCTTGGAAAAGCACAGGAAAACTAAAGGTATTACTT  943

seq1  ACCTAAATACTAAATTTCAAGTGCTGAAAAATGCCCCACCACAGAAGCTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAATACTAAATTTCAAGTGCTGAAAAATGCCCCACCACAGAAGCTA  993

seq1  ATACACATCTAGCTTTAACTAAGACCCATGTTTGCTAGTCAACAATATAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACATCTAGCTTTAACTAAGACCCATGTTTGCTAGTCAACAATATAG  1043

seq1  AAGCTCATATTTTTAAATTCAATACCAGTAGCAAGAAGAATAAAATATAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCATATTTTTAAATTCAATACCAGTAGCAAGAAGAATAAAATATAT  1093

seq1  TAAAGGAATTC  1110
      |||||||||||
seq2  TAAAGGAATTC  1104


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