BAC Information

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BAC

Clone NameB6Ng01-211A17
Chromosome5 (Build37)
Map Location 73,003,167 - 73,166,720
singlet/doubletdoublet
Overlap geneCnga1, LOC384275, Npal1, Txk, Tec
Upstream geneGabra4, Gabrb1, LOC666545, Commd8, Atp10d, Corin, Nfxl1, Zar1, EG545758
Downstream geneSlain2, Slc10a4, LOC667127, Fryl, Ociad1, Ociad2, LOC667154, LOC100042205, C130090K23Rik, LOC627733, Dcun1d4, BC031901, Sgcb, Spata18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-211A17.bB6Ng01-211A17.g
ACCGA029225GA029226
length9361,161
definitionB6Ng01-211A17.b B6Ng01-211A17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,166,086 - 73,166,720)(73,003,167 - 73,004,319)
sequence
gaattctcttgtctaaggtgtctgaggccaaaagccagaagcctgttgtg
tgaattttgcgagaagaagcaacacacacacacacacacacacacacaca
cacacacacacacacacacccctactgaactcacaacagaccaaaatcca
acttggcgaaccagtgagttttattggtatcacttatgggaatatgggtg
aggggtcactcataggaacagatatgactccaagatagatacaccaccaa
agcccacctcagcatgggagcctagaacacactgcacagcctgcaggcag
ctccacagactgaagagcgttcttcccaagtgactcctctgatccaaacc
tctttcagacagcttggtgagtttcagcttcttcttggtgacctgatagt
ctttcattcatcttgtcttgcctgtgagtgactctcagcaatcttttact
gtttattcctagagagggagtagatcagcaaatctggtcagtttcaggga
cttcctggagcttttttttttttttttttacttctttaccttctgtgtta
tggagcttccttcaggatggaatgtttcaatcccagagaaagtgctaccc
aacaggatctttaatgactaggctgggacaatagtgggaaattcagatga
ccaaagaggccccagtgactttaggacttttgaggtttttaggaatttga
ctgtgatggaggatttattgccaactcaaaacatctatcaaaacaaactt
aaagttgaagtcctgagaaaatgatcttagtcatactctttggggtccat
ttgcttatagtcacacggaggcatgattctggggggagctgaagggtaga
ctgtctctaggataaaagaaaggggattgcagtactcacagagtcttctc
aaaggctcagtgactcaggtatgggccaggtgggaa
gaattcactaatgcagcaacattctttaattgaaaaattcaaacttgcta
gttttagggaacctaaaaaaagttggatagcaatttatataaaatgtttt
ttcttaagtatttaaggacttcatctgaggcaccctgctgtaaagctctt
tctatgctttgggaagtttttacctacatctacaatgctttacaatctca
tgtcggttttcaatgccagtaaaaaacacttactcttctttcttctcttt
ggttttctcctccttctttttcttctctttttccttttccttcttctttt
tcttctctgggtcctttttattttcatttttatcatcggccttgctggaa
aagttgagtatgtgtagttaccatatgcaaacagcacacaggcagacaag
cataaagaggcattgatgcaacgtctggcttacctcttcttttccttctt
ttttttctttttctcctttggctctctagagaaaaacagcatctgtcaca
tagccacatcactttagccccaggttctctctactttcctctccattgag
caagaattctcagccttgcatttaaagtcctgcctcagtgctaagaaacc
cacaggatggacagaagcaaatgcgtagccagacaaacaagcaaaccgta
ccccagttaacagaaaacaaatgttgaaaggggcagagttagaattggga
acaaaacacccatggaaggagttacagagacaaagtttggagctgagaca
aaaggatgggcaatgtatagactgccatacccggggctccatcccataat
cagcctccaaacactgacaccattgcatacactagcaagattttgctgaa
aggagcctgatataactatctcttatgaggcttatgctgggggcctagca
aacacagaagtggatgctcacagtcagctattggatggaacacagggccc
ccagtggaaggagctagagaaaggtaccccaaggagctaaagggggtttg
caaccctataaggtggacaacatatgaaactaaccagtacccccagagct
cgttctcttctagctgatattgtaatcagaagaatggccctagtcagcat
catttgaacgaggtccattggtcttgctaactttatatgtcttcagtaca
ggcattgccag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_73166086_73166720
seq2: B6Ng01-211A17.b_48_682 (reverse)

seq1  ACTATTGTCCCAGCCTAGTCATTAAAGATCCTGTTGGGTAGCACTTTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTGTCCCAGCCTAGTCATTAAAGATCCTGTTGGGTAGCACTTTCTC  50

seq1  TGGGATTGAAACATTCCATCCTGAAGGAAGCTCCATAACACAGAAGGTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTGAAACATTCCATCCTGAAGGAAGCTCCATAACACAGAAGGTAA  100

seq1  AGAAGTAAAAAAAAAAAAAAAAAAGCTCCAGGAAGTCCCTGAAACTGACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTAAAAAAAAAAAAAAAAAAGCTCCAGGAAGTCCCTGAAACTGACC  150

seq1  AGATTTGCTGATCTACTCCCTCTCTAGGAATAAACAGTAAAAGATTGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTGCTGATCTACTCCCTCTCTAGGAATAAACAGTAAAAGATTGCTG  200

seq1  AGAGTCACTCACAGGCAAGACAAGATGAATGAAAGACTATCAGGTCACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCACTCACAGGCAAGACAAGATGAATGAAAGACTATCAGGTCACCA  250

seq1  AGAAGAAGCTGAAACTCACCAAGCTGTCTGAAAGAGGTTTGGATCAGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAGCTGAAACTCACCAAGCTGTCTGAAAGAGGTTTGGATCAGAGG  300

seq1  AGTCACTTGGGAAGAACGCTCTTCAGTCTGTGGAGCTGCCTGCAGGCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACTTGGGAAGAACGCTCTTCAGTCTGTGGAGCTGCCTGCAGGCTGT  350

seq1  GCAGTGTGTTCTAGGCTCCCATGCTGAGGTGGGCTTTGGTGGTGTATCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGTGTTCTAGGCTCCCATGCTGAGGTGGGCTTTGGTGGTGTATCTA  400

seq1  TCTTGGAGTCATATCTGTTCCTATGAGTGACCCCTCACCCATATTCCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGAGTCATATCTGTTCCTATGAGTGACCCCTCACCCATATTCCCAT  450

seq1  AAGTGATACCAATAAAACTCACTGGTTCGCCAAGTTGGATTTTGGTCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGATACCAATAAAACTCACTGGTTCGCCAAGTTGGATTTTGGTCTGT  500

seq1  TGTGAGTTCAGTAGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTTCAGTAGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  550

seq1  GTGTGTGTGTGTGTTGCTTCTTCTCGCAAAATTCACACAACAGGCTTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTTGCTTCTTCTCGCAAAATTCACACAACAGGCTTCTG  600

seq1  GCTTTTGGCCTCAGACACCTTAGACAAGAGAATTC  635
      |||||||||||||||||||||||||||||||||||
seq2  GCTTTTGGCCTCAGACACCTTAGACAAGAGAATTC  635

seq1: chr5_73003167_73004319
seq2: B6Ng01-211A17.g_68_1228

seq1  GAATTCACTAATGCAGCAACATTCTTTAATTGAAAAATTCAAACTTGCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAATGCAGCAACATTCTTTAATTGAAAAATTCAAACTTGCTA  50

seq1  GTTTTAGGGAACCTAAAAAAAGTTGGATAGCAATTTATATAAAATGTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAGGGAACCTAAAAAAAGTTGGATAGCAATTTATATAAAATGTTTT  100

seq1  TTCTTAAGTATTTAAGGACTTCATCTGAGGCACCCTGCTGTAAAGCTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAAGTATTTAAGGACTTCATCTGAGGCACCCTGCTGTAAAGCTCTT  150

seq1  TCTATGCTTTGGGAAGTTTTTACCTACATCTACAATGCTTTACAATCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGCTTTGGGAAGTTTTTACCTACATCTACAATGCTTTACAATCTCA  200

seq1  TGTCGGTTTTCAATGCCAGTAAAAAACACTTACTCTTCTTTCTTCTCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCGGTTTTCAATGCCAGTAAAAAACACTTACTCTTCTTTCTTCTCTTT  250

seq1  GGTTTTCTCCTCCTTCTTTTTCTTCTCTTTTTCCTTTTCCTTCTTCTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTCTCCTCCTTCTTTTTCTTCTCTTTTTCCTTTTCCTTCTTCTTTT  300

seq1  TCTTCTCTGGGTCCTTTTTATTTTCATTTTTATCATCGGCCTTGCTGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCTGGGTCCTTTTTATTTTCATTTTTATCATCGGCCTTGCTGGAA  350

seq1  AAGTTGAGTATGTGTAGTTACCATATGCAAACAGCACACAGGCAGACAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGAGTATGTGTAGTTACCATATGCAAACAGCACACAGGCAGACAAG  400

seq1  CATAAAGAGGCATTGATGCAACGTCTGGCTTACCTCTTCTTTTCCTTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAGAGGCATTGATGCAACGTCTGGCTTACCTCTTCTTTTCCTTCTT  450

seq1  TTTTTTCTTTTTCTCCTTTGGCTCTCTAGAGAAAAACAGCATCTGTCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTTTTTCTCCTTTGGCTCTCTAGAGAAAAACAGCATCTGTCACA  500

seq1  TAGCCACATCACTTTAGCCCCAGGTTCTCTCTACTTTCCTCTCCATTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCACATCACTTTAGCCCCAGGTTCTCTCTACTTTCCTCTCCATTGAG  550

seq1  CAAGAATTCTCAGCCTTGCATTTAAAGTCCTGCCTCAGTGCTAAGAAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATTCTCAGCCTTGCATTTAAAGTCCTGCCTCAGTGCTAAGAAACC  600

seq1  CACAGGATGGACAGAAGCAAATGCGTAGCCAGACAAACAAGCAAACCGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGATGGACAGAAGCAAATGCGTAGCCAGACAAACAAGCAAACCGTA  650

seq1  CCCCAGTTAACAGAAAACAAATGTTGAAAGGGGCAGAGTTAGAATTGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGTTAACAGAAAACAAATGTTGAAAGGGGCAGAGTTAGAATTGGGA  700

seq1  ACAAAACACCCATGGAAGGAGTTACAGAGACAAAGTTTGGAGCTGAGACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACACCCATGGAAGGAGTTACAGAGACAAAGTTTGGAGCTGAGACA  750

seq1  AAAGGATGGGCAATGTATAGACTGCCATACCCGGGGCTCCATCCCATAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATGGGCAATGTATAGACTGCCATACCCGGGGCTCCATCCCATAAT  800

seq1  CAGCCTCCAAACACTGACACCATTGCATACACTAGCAAGATTTTGCTGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTCCAAACACTGACACCATTGCATACACTAGCAAGATTTTGCTGAA  850

seq1  AGGAGCCTGATATAACTATCTCTTATGAGGC-TATGCT-GGGGCCTAGCA  898
      ||||||||||||||||||||||||||||||| |||||| |||||||||||
seq2  AGGAGCCTGATATAACTATCTCTTATGAGGCTTATGCTGGGGGCCTAGCA  900

seq1  AACACAGAAGTGGATGCTCACAGTCAGCTATTGGATGGAACACAGGGCCC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGAAGTGGATGCTCACAGTCAGCTATTGGATGGAACACAGGGCCC  950

seq1  CCAGTGG-AGGAGCTAGAGAAA-GTA-CCCAAGGAGCTAAA-GGGGTTTG  994
      ||||||| |||||||||||||| ||| |||||||||||||| ||||||||
seq2  CCAGTGGAAGGAGCTAGAGAAAGGTACCCCAAGGAGCTAAAGGGGGTTTG  1000

seq1  CAACCCTAT-AGGTGGAACAACAATATG-AACTAACCAGTACCCCCAGAG  1042
      ||||||||| |||||| ||||| ||||| |||||||||||||||||||||
seq2  CAACCCTATAAGGTGG-ACAAC-ATATGAAACTAACCAGTACCCCCAGAG  1048

seq1  CTCG-TCTC-TCTAGCTGCATA-TGT-ATCAGAAG-ATGG-CCTAGTCAG  1086
      |||| |||| |||||||| ||| ||| |||||||| |||| |||||||||
seq2  CTCGTTCTCTTCTAGCTG-ATATTGTAATCAGAAGAATGGCCCTAGTCAG  1097

seq1  CCATCATTGGAAACAGAGGTCCATTGGTCTTGCAAACTTTATATG-CCTC  1135
       ||||||| |||   |||||||||||||||||| ||||||||||| | ||
seq2  -CATCATTTGAA--CGAGGTCCATTGGTCTTGCTAACTTTATATGTCTTC  1144

seq1  AGTACAGGGGAATGCCAG  1153
      |||||| || | ||||||
seq2  AGTACA-GGCATTGCCAG  1161