BAC Information

Click to search

BAC

Clone NameB6Ng01-211C03
Chromosome5 (Build37)
Map Location 58,593,902 - 58,594,748
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041349, LOC666455, LOC625721, EG666465, Pcdh7
Downstream geneLOC100041385, LOC100041396, LOC666499, EG625870
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-211C03.bB6Ng01-211C03.g
ACCGA029293GA029294
length1,133859
definitionB6Ng01-211C03.b B6Ng01-211C03.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctattaatatagtggaacatgtgttcttattacattttggagtac
cttctgggtatatgcccaggagtggtatcgctgggtacttagtaacttgc
ctttagtagagcattacaacaaccaaccttacctgggttggatttcacat
gtaatcacccttacaacttaagctaatgtgtaatgttggtgttaagttat
gtattatcccataccccttagtcaaaaagcaatgaatatgggtatgtgta
tgtattgtggtagattaaaagggacttgctacaacaactactcactgtaa
gtgttggaaataacatacatatattgcttgatattggtattttgcactaa
tgagagtttgaggtcatttgagactagttagagtaaataagttagtccaa
tgacagttttaaatatttcagtaaagtgttgctcattccttctatatgtt
gatgttttctatgatcaataaacacaaagcatagctatatgttaggcaca
attagacattaagcaaggatagggatagacacaggcaataaggagagatg
aaacacaaacaatagaaagactacagaaaaaacagaatctaggaactaag
gaagaacagagagtgaatttgaaaattcaaacatgagctcactcttggtc
aaattaattcaagaggaagtgctcaatgtgctttccttagggtggcacca
gcacattttggtggccccaaggctatctttattctatataagtgctccag
atttttttcaaggaatcatgagattcttgagttaatacttaccttctagg
aatggaacatacttgtttcctgtgtggcttctaacagtcttgctttcacc
atgctgataatctgtcaaggctactgtagagctttagagaagaaaacagc
aataaaaaatgtggcaactccctttgttcctagtagattccttccatttt
ttctagagtaaacactttcaaattcctttaagctgttaatttataaccag
aagaatgaaaaattacctggtggtaatatttgttcagtatattcttgtac
ttaagaatagaaaagtttaaattctaaatgtaagtttttgttgtgtggtt
cctggtcctggtgcgtgtcttgtgtctctgggt

gaattcaataaaggagaaaggctgcattttcagcataacaagcaaactca
taacaccataaactttatttaataatttcgagccacagatgctgtggggt
tttacataaaggaggattgaaaaacgtgagtggatttggggggttatgtt
tatgctggataaagagagataatataatctctctatatctatatatgaat
atgtctatatctagctatatatctagtatagttacctatcaatatatagg
tgtttagtgtctccccaactccagtgagtttctgtggctaaagtaaacag
aaaatgttccagaggaactttaattgttagtttcacagaaagaagaaggg
tatctgtgaaaaacgtgtttacctacaacttttcaaatctaaatgtctat
gggttaaataaacccatgcactgtgtatctgagaatgtaacatgtttgca
aactaagcagttattttggaagttggagttttgttgttgttgtggcttgg
tttttaatgaaaaacatgactatcaatttattaaataatgttttaaattg
ccagcaaaagatggaatgtttcatacttgtcctcaaacttaatggaagat
ggcttttgtatttaatgaagcaattgaataggcataggctaggatgattt
tacacatattattgttatcactttcgctgatgtatttttatagtattttg
agacagtcacattctaataatgaactaaatatttacaacacctttttcaa
ctaaagtgttaatcagattagttttctaagtaaggtatgtttgcatgaga
aaactgacaaggtaatttgactttttggttccactttctgttgaacagat
accatgact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_58593902_58594748
seq2: B6Ng01-211C03.g_67_925

seq1  GAATTCAATAAAGGAGAAAGGCTGCATTTTCAGCATAACAAGCAAACTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAAAGGAGAAAGGCTGCATTTTCAGCATAACAAGCAAACTCA  50

seq1  TAACACCATAAACTTTATTTAATAATTTCGAGCCACAGATGCTGTGGGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACCATAAACTTTATTTAATAATTTCGAGCCACAGATGCTGTGGGGT  100

seq1  TTTACATAAAGGAGGATTGAAAAACGTGAGTGGATTTGGGGGGTTATGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATAAAGGAGGATTGAAAAACGTGAGTGGATTTGGGGGGTTATGTT  150

seq1  TATGCTGGATAAAGAGAGATAATATAATCTCTCTATATCTATATATGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTGGATAAAGAGAGATAATATAATCTCTCTATATCTATATATGAAT  200

seq1  ATGTCTATATCTAGCTATATATCTAGTATAGTTACCTATCAATATATAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTATATCTAGCTATATATCTAGTATAGTTACCTATCAATATATAGG  250

seq1  TGTTTAGTGTCTCCCCAACTCCAGTGAGTTTCTGTGGCTAAAGTAAACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAGTGTCTCCCCAACTCCAGTGAGTTTCTGTGGCTAAAGTAAACAG  300

seq1  AAAATGTTCCAGAGGAACTTTAATTGTTAGTTTCACAGAAAGAAGAAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTTCCAGAGGAACTTTAATTGTTAGTTTCACAGAAAGAAGAAGGG  350

seq1  TATCTGTGAAAAACGTGTTTACCTACAACTTTTCAAATCTAAATGTCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGTGAAAAACGTGTTTACCTACAACTTTTCAAATCTAAATGTCTAT  400

seq1  GGGTTAAATAAACCCATGCACTGTGTATCTGAGAATGTAACATGTTTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTAAATAAACCCATGCACTGTGTATCTGAGAATGTAACATGTTTGCA  450

seq1  AACTAAGCAGTTATTTTGGAAGTTGGAGTTTTGTTGTTGTTGTGGCTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAGCAGTTATTTTGGAAGTTGGAGTTTTGTTGTTGTTGTGGCTTGG  500

seq1  TTTTTAATGAAAAACATGACTATCAATTTATTAAATAATGTTTTAAATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAATGAAAAACATGACTATCAATTTATTAAATAATGTTTTAAATTG  550

seq1  CCAGCAAAAGATGGAATGTTTCATACTTGTCCTCAAACTTAATGGAAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAAAAGATGGAATGTTTCATACTTGTCCTCAAACTTAATGGAAGAT  600

seq1  GGCTTTTGTATTTAATGAAGCAATTGAATAGGCATAGGCTAGGATGATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTTGTATTTAATGAAGCAATTGAATAGGCATAGGCTAGGATGATTT  650

seq1  TACACATATTATTGTTATCACTTTCGCTGATGTATTTTTATAGTATTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATATTATTGTTATCACTTTCGCTGATGTATTTTTATAGTATTTTG  700

seq1  AGACAGTCACATTCTAATAATGAACTAAATA-TTACAACACC-TTTTCAA  748
      ||||||||||||||||||||||||||||||| |||||||||| |||||||
seq2  AGACAGTCACATTCTAATAATGAACTAAATATTTACAACACCTTTTTCAA  750

seq1  CT-AAGTGTT-ATCAGA-TAG-TTTCTAAGTAAGGTATG-TTGCATGAG-  792
      || ||||||| |||||| ||| ||||||||||||||||| ||||||||| 
seq2  CTAAAGTGTTAATCAGATTAGTTTTCTAAGTAAGGTATGTTTGCATGAGA  800

seq1  AAACTGACAAGGTAA-TTGAC-TTTTGGTTTCAC-TTCTG-TGAACAGAT  838
      ||||||||||||||| ||||| |||||||| ||| ||||| |||||||||
seq2  AAACTGACAAGGTAATTTGACTTTTTGGTTCCACTTTCTGTTGAACAGAT  850

seq1  ACCATGACT  847
      |||||||||
seq2  ACCATGACT  859


| Home | SequenceCutter | Blast | Download |