BAC Information

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BAC

Clone NameB6Ng01-211H03
Chromosome5 (Build37)
Map Location 55,410,077 - 55,411,113
singlet/doubletsinglet
Overlap genenone
Upstream geneStim2, EG666377, LOC666380
Downstream geneEG666405
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-211H03.bB6Ng01-211H03.g
ACCGA029511GA029512
length1,0351,128
definitionB6Ng01-211H03.b B6Ng01-211H03.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccgcatctgttccaggtacatccaagatagactactgcattaatt
ctaacaagaagaattttacaggtttgaccaaattcctttaggagttattc
tgattaaattttaaatactgtgtatccattgttccttttattcttgccta
ggacttcaagagtagagaagtttactttcatccaaagtcctaaaaatctc
atttcaaagggtattacatacatataccctttgggtgatcagaatataag
gaacacaaactatattcttttcttaattaatcacatgtatcatgtagttt
aggaatttactgtgagctaaaaccatttagtcctcatgtagctttgtata
cttagcaaatagcaagtgcttctgctaaattaataattaattgatgtcca
tattactgaggggatgggagacttcagaatagtgatcaattttgttattt
gctcatttataaggaggtatccacttaagttgattagcaacaatctcttc
tttcttttcatttttcttttttcttgtttaaattttatttaatcttttat
tacagtccagatttcatacccttcctggtccaccctctgactgttcctca
taagatacccttacccttccaccacccaccactaccaggcctcctcaatc
cctggggactccagtcttttttagagttaggtacatcttctatgactgtg
tccagacatggttgtcctctgctgtatatatgttggggaactcatatcag
ctggtgcatgcttcctgcttggtggcccagtgtctgagagatttcagggg
tccaggttaggggagactgctggtcctcctatcggattgccctcctccac
agcttcttccagctcttccctaattcaaccacaggagtcaactgctttta
tccattggttgagtgcaatatctgcatctgactccctcagttacttgttg
ggtctttcagagggcagtcatgataggcccctttgtgtgagtgctcatag
cctcatatagtgtcaggcttgggctcccttagctg

tgtgggaagcacttctggcattaactttgacagacttcttgcttgtgact
aatcatgaatgagtctgctgacacctgtctttgtcttaaattaagacatg
ctttatatcctgacagttccttgtttatgcatatatccttgagagactgt
cctagcctggaggaaatggccttggtcaaacacagatactgtgtaccata
aactagccatgtagggattcatggtcatgctttgtgttgcttgcctttaa
aaggcactgagaaaatacacttgtttgctggcatggtactcaccagcagc
cctcccatctctgtctcttgaaccttctttatgtctttcctagaataatc
ctcactcccccagttgtggggggctgaccagaaggctccagcatcagctg
agacagacatacacatttgctgagactagacaggtgctgaggaagggagt
ataaaaggacttgacagacagtgagggaaactgagcttggcttgattata
gagctagctgtacaacactagcacagttggtctctatttgttgttgatct
tcatttgagggaggtccagcagagaacttctggcatccctgctggtccct
cctgctgacttgtgttgatgctgaggttgaagactggctatcccaactct
acccaaactggaatgctggggtatccatgaagtgttttcttgtgaattga
gctgttgctgctaacctgtaaactgaagtgctgatttccaagcaacacag
atgagagttgttccaaagaacctttctaaacaggtccacttcccccatat
ccttttgatttgtgtgtttttgttttgttttgttttgctttgctttgttt
tgttttgtttattactacctctggtggggtggtgggctacaagggaggtt
aaagtgtttaaggacccatcatttaaaaatagggattttactcaccagag
gtcttagatcccgtaggcaatccttgtggtgggccttgcatgtatcgggc
gacttcgctggcaagtaacccggggcttcagtgagcggggaggggctgtg
cctcaagtcaggctcagttagtctgctttcctatttacgcgatctcagac
gatatccaaagattggccatattcggtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_55410077_55411113
seq2: B6Ng01-211H03.b_44_1073

seq1  GAATTCCGCATCTGTTCCAGGTACATCCAAGATAGACTACTGCATTAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCGCATCTGTTCCAGGTACATCCAAGATAGACTACTGCATTAATT  50

seq1  CTAACAAGAAGAATTTTACAGGTTTGACCAAATTCCTTTAGGAGTTATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAAGAAGAATTTTACAGGTTTGACCAAATTCCTTTAGGAGTTATTC  100

seq1  TGATTAAATTTTAAATACTGTGTATCCATTGTTCCTTTTATTCTTGCCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTAAATTTTAAATACTGTGTATCCATTGTTCCTTTTATTCTTGCCTA  150

seq1  GGACTTCAAGAGTAGAGAAGTTTACTTTCATCCAAAGTCCTAAAAATCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTCAAGAGTAGAGAAGTTTACTTTCATCCAAAGTCCTAAAAATCTC  200

seq1  ATTTCAAAGGGTATTACATACATATACCCTTTGGGTGATCAGAATATAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAAAGGGTATTACATACATATACCCTTTGGGTGATCAGAATATAAG  250

seq1  GAACACAAACTATATTCTTTTCTTAATTAATCACATGTATCATGTAGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACAAACTATATTCTTTTCTTAATTAATCACATGTATCATGTAGTTT  300

seq1  AGGAATTTACTGTGAGCTAAAACCATTTAGTCCTCATGTAGCTTTGTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATTTACTGTGAGCTAAAACCATTTAGTCCTCATGTAGCTTTGTATA  350

seq1  CTTAGCAAATAGCAAGTGCTTCTGCTAAATTAATAATTAATTGATGTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCAAATAGCAAGTGCTTCTGCTAAATTAATAATTAATTGATGTCCA  400

seq1  TATTACTGAGGGGATGGGAGACTTCAGAATAGTGATCAATTTTGTTATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACTGAGGGGATGGGAGACTTCAGAATAGTGATCAATTTTGTTATTT  450

seq1  GCTCATTTATAAGGAGGTATCCACTTAAGTTGATTAGCAACAATCTCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATTTATAAGGAGGTATCCACTTAAGTTGATTAGCAACAATCTCTTC  500

seq1  TTTCTTTTCATTTTTCTTTTTTCTTGTTTAAATTTTATTTAATCTTTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTCATTTTTCTTTTTTCTTGTTTAAATTTTATTTAATCTTTTAT  550

seq1  TACAGTCCAGATTTCATACCCTTCCTGGTCCACCCTCTGACTGTTCCTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTCCAGATTTCATACCCTTCCTGGTCCACCCTCTGACTGTTCCTCA  600

seq1  TAAGATACCCTTACCCTTCCACCACCCACCACTACCAGGCCTCCTCAATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATACCCTTACCCTTCCACCACCCACCACTACCAGGCCTCCTCAATC  650

seq1  CCTGGGGACTCCAGTCTTTTTTAGAGTTAGGTACATCTTCTATGACTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGGACTCCAGTCTTTTTTAGAGTTAGGTACATCTTCTATGACTGTG  700

seq1  TCCAGACATGGTTGTCCTCTGCTGTATATATGTTGGGGAACTCATATCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGACATGGTTGTCCTCTGCTGTATATATGTTGGGGAACTCATATCAG  750

seq1  CTGGTGCATGCTTCCTGCTTGGTGGCCCAGTGTCTGAGAGATTTCAGGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGCATGCTTCCTGCTTGGTGGCCCAGTGTCTGAGAGATTTCAGGGG  800

seq1  TCCAGGTTAGGGGAGACTGCTGGTCCTCCTATCGGATTGCCCTCCTCCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGTTAGGGGAGACTGCTGGTCCTCCTATCGGATTGCCCTCCTCCAC  850

seq1  AGCTTCTTCCAGCTCTTCCCTAATTCAACCACAGGAGTCAACTGCTTTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTTCCAGCTCTTCCCTAATTCAACCACAGGAGTCAACTGCTTTTA  900

seq1  TCCATTGGTTGAGTGCAAATATCTGCATCTGACTCCCTCAGTTACTTGTT  950
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TCCATTGGTTGAGTGC-AATATCTGCATCTGACTCCCTCAGTTACTTGTT  949

seq1  GGGTCTTTCAGAGGGCAGTCATGATAGGCCCCTTTGTGTGAGTGCTCCAT  1000
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GGGTCTTTCAGAGGGCAGTCATGATAGGCCCCTTTGTGTGAGTGCT-CAT  998

seq1  AGCCTCAATAATAGTGTCAGGCCTTGGGGCCTCCCTT  1037
      |||||||   ||||||||||| ||||||  |||||||
seq2  AGCCTCA--TATAGTGTCAGG-CTTGGG--CTCCCTT  1030


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