BAC Information

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BAC

Clone NameB6Ng01-211K08
Chromosome5 (Build37)
Map Location 8,881,326 - 8,882,445
singlet/doubletsinglet
Overlap genenone
Upstream geneEG546855, Steap4, Sri, LOC433840, Adam22, Dbf4, Slc25a40, Gm440, Abcb1a, EG330031, Abcb1b
Downstream geneAbcb4, Crot, 4930420K17Rik, Dmtf1, LOC654361, 9330182L06Rik, Grm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-211K08.bB6Ng01-211K08.g
ACCGA029655GA029656
length1,1341,139
definitionB6Ng01-211K08.b B6Ng01-211K08.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctacagagcctaaacatactgattctcctaggaaagtctttcttg
tgctcagctgcttagccattcaaggcggacaggatctaatggaaccctgg
cattgtccacatgattctggtcatgtaggcatgaaaagttggggaggttt
cctctttgatttcaaaggaaactccaagaggccatgtaatgtgtgattgg
gtctgataccttcaggcagcctctgaggggcctgtgtgtgtgtgaagctc
agtctacagtggtgactccaggattctgaaggtgctatgaacatagattg
tttatcaatgaaagccacagatggtgagaggagtccagaagagaagcttc
agggataggctgccccagcctattggagctcaaaactcatatatatgtat
atatatatatatatacacacacacatatatatatgagattctggtccact
cctttaagattatacctggtcccagtccctttctttttcccctgctttcc
attcaccatgaggtgaaggagtcactctgcaccacaaggttctgcccaag
tgcttggggccaagccacatactgaacccttccataccatgagcaaaatt
aatcagcccatcccccaccttaaatttttcagtagtaacttttggggaaa
taaagcaggcctgttgttttctatctgttctgctaagtacaattaaaaat
actgaatgatatatctaaaaaaaattaagactgaaaactggagatagtcc
agaagactgaacaaaggtcttgggacccaaaggacagtacatggcatcga
gttcctgctttgttgctttgttgcctcatttgttccagctgaaggaggaa
ataatccagaaatgacaacatgcagaaacaaagtccccctaccctcgagc
cagtagacctagaagggagcaggctagtaaggcgagccactttcgagaaa
tgagttatcccacagcctcctttgggtggttccaagagctccacctgtct
gtggtgggagcatcaaatgctgggcaggaatgtgtggcaaagtaaacctg
cttaatataaacagccagagacttaaaaaaagaagagggaggccactggt
ggccccccacagtcccttcaaaatatcccctaat
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaaat
gttcaacattcttaatcatcagggaaatgcaaatcaaaacaaccctaaga
ttccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacag
cagatgctggcgaggatgtggagaaagaggaacactcctccattgttggt
gggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctc
agaaaattggacatagtactaccggaggatcccgcaatacctctcctagg
catatatccagaagatgttccaactggtaagaaggacacatgctccacta
tgttcatagcagccttatttataatagccagaaccttgaaagaacccaga
tgcccaacagaggaatggatacaggaaatgtggtacatttacacagtgaa
atactactcagctattaaaaagaacgaatttatgaaattcctagccaaat
ggatggacctggagggcatcatcctgaactcgcacaatatgtacttactg
ataagtggatattatttcagaaacttaggatacccaagatataacataca
atttgctaaatgcatgaaactcaagaagaacgaagaccaaagtgtggaca
ctttgccccttcttagaattggcaacaaaacacccatggaaggagttaca
gagacaaattttggatctgtgatgaaaggatggacactctagagactgcc
atattcagggatccatcccataatcagcctccaaatgctgacaccattgc
atacactagcaagattttgctgaaaggacccagatagagctgtctcttgt
gagactattgccgggcctggcaaacacagaagtggatgctcacagtcagc
tattggatggatcacagggccccaatggaggagctagagaaagtaaccaa
ggagctaaagggatctacatctatagtggaacacattatgaactaaccag
tatcccgagcctcttgtcttctagctgcatgtgtatccaagatggctagt
gccatcactgggaaggaaggcccatggaattgccaactttatatggccag
tacaggatgcaagaccaaggtggaagtggggggaagcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_8881326_8882445
seq2: B6Ng01-211K08.b_51_1181

seq1  TTCTACAGAGCCTAAACATACTGATTCTCCTAGGAAAGTCTTTCTTGTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACAGAGCCTAAACATACTGATTCTCCTAGGAAAGTCTTTCTTGTGC  50

seq1  TCAGCTGCTTAGCCATTCAAGGCGGACAGGATCTAATGGAACCCTGGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTGCTTAGCCATTCAAGGCGGACAGGATCTAATGGAACCCTGGCAT  100

seq1  TGTCCACATGATTCTGGTCATGTAGGCATGAAAAGTTGGGGAGGTTTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCACATGATTCTGGTCATGTAGGCATGAAAAGTTGGGGAGGTTTCCT  150

seq1  CTTTGATTTCAAAGGAAACTCCAAGAGGCCATGTAATGTGTGATTGGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGATTTCAAAGGAAACTCCAAGAGGCCATGTAATGTGTGATTGGGTC  200

seq1  TGATACCTTCAGGCAGCCTCTGAGGGGCCTGTGTGTGTGTGAAGCTCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACCTTCAGGCAGCCTCTGAGGGGCCTGTGTGTGTGTGAAGCTCAGT  250

seq1  CTACAGTGGTGACTCCAGGATTCTGAAGGTGCTATGAACATAGATTGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGTGGTGACTCCAGGATTCTGAAGGTGCTATGAACATAGATTGTTT  300

seq1  ATCAATGAAAGCCACAGATGGTGAGAGGAGTCCAGAAGAGAAGCTTCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATGAAAGCCACAGATGGTGAGAGGAGTCCAGAAGAGAAGCTTCAGG  350

seq1  GATAGGCTGCCCCAGCCTATTGGAGCTCAAAACTCATATATATGTATATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGCTGCCCCAGCCTATTGGAGCTCAAAACTCATATATATGTATATA  400

seq1  TATATATATATACACACACACATATATATATGAGATTCTGGTCCACTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATACACACACACATATATATATGAGATTCTGGTCCACTCCT  450

seq1  TTAAGATTATACCTGGTCCCAGTCCCTTTCTTTTTCCCCTGCTTTCCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGATTATACCTGGTCCCAGTCCCTTTCTTTTTCCCCTGCTTTCCATT  500

seq1  CACCATGAGGTGAAGGAGTCACTCTGCACCACAAGGTTCTGCCCAAGTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGAGGTGAAGGAGTCACTCTGCACCACAAGGTTCTGCCCAAGTGC  550

seq1  TTGGGGCCAAGCCACATACTGAACCCTTCCATACCATGAGCAAAATTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGCCAAGCCACATACTGAACCCTTCCATACCATGAGCAAAATTAAT  600

seq1  CAGCCCATCCCCCACCTTAAATTTTTCAGTAGTAACTTTTGGGGAAATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCATCCCCCACCTTAAATTTTTCAGTAGTAACTTTTGGGGAAATAA  650

seq1  AGCAGGCCTGTTGTTTTCTATCTGTTCTGCTAAGTACAATTAAAAATACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGCCTGTTGTTTTCTATCTGTTCTGCTAAGTACAATTAAAAATACT  700

seq1  GAATGATATATCTAAAAAAAATTAAGACTGAAAACTGGAGATAGTCCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGATATATCTAAAAAAAATTAAGACTGAAAACTGGAGATAGTCCAGA  750

seq1  AGACTGAACAAAGGTCTTGGGACCCAAAGGACAGTACATGGCATCGAGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGAACAAAGGTCTTGGGACCCAAAGGACAGTACATGGCATCGAGTT  800

seq1  CCTGCTTTGTTGCTTTGTTGCCTCATTTGTTCCAGCTGAAGGAGGAAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTTGTTGCTTTGTTGCCTCATTTGTTCCAGCTGAAGGAGGAAATA  850

seq1  ATCCAGAAATGACAACATGCAGAAACAAAGTCCCCCTACCCTCGAGCCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGAAATGACAACATGCAGAAACAAAGTCCCCCTACCCTCGAGCCAG  900

seq1  TAGACCTAGAAGGGAGCAGGCTAGTAAGGCGAG-CAC-TTCGAGAAATGA  948
      ||||||||||||||||||||||||||||||||| ||| ||||||||||||
seq2  TAGACCTAGAAGGGAGCAGGCTAGTAAGGCGAGCCACTTTCGAGAAATGA  950

seq1  G-TATCCCACAG-CTCCTTT-GGTGGTTCCAAGAGCTCCACCTGTCTGTG  995
      | |||||||||| ||||||| |||||||||||||||||||||||||||||
seq2  GTTATCCCACAGCCTCCTTTGGGTGGTTCCAAGAGCTCCACCTGTCTGTG  1000

seq1  GT-GGAGCATCAAATGCT-GGCAGGAATGTGTGGCAAAGTAAAACTGCTT  1043
      || ||||||||||||||| |||||||||||||||||||||||| ||||||
seq2  GTGGGAGCATCAAATGCTGGGCAGGAATGTGTGGCAAAGTAAACCTGCTT  1050

seq1  -ATATAACAAGCCAGAGACTTAAAAAAAGAAGAGGAAGG-CACT-GTGG-  1089
       ||||||  |||||||||||||||||||||||||| ||| |||| |||| 
seq2  AATATAAACAGCCAGAGACTTAAAAAAAGAAGAGGGAGGCCACTGGTGGC  1100

seq1  -CCCCACAGTCCCCTTCAAAATATCCCCTAAT  1120
       ||||||||| |||||||||||||||||||||
seq2  CCCCCACAGT-CCCTTCAAAATATCCCCTAAT  1131