BAC Information

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BAC

Clone NameB6Ng01-212A21
Chromosome5 (Build37)
Map Location 83,563,843 - 83,734,090
singlet/doubletdoublet
Overlap geneSrd5a2l2
Upstream geneEG433912, LOC100039434
Downstream geneLOC100039608, LOC231368, Epha5, LOC100039489
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-212A21.bB6Ng01-212A21.g
ACCGA029951GA029952
length1,0901,058
definitionB6Ng01-212A21.b B6Ng01-212A21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,732,999 - 83,734,090)(83,563,843 - 83,564,901)
sequence
gaattctctgcttagctctagaccacattttttaattgggttattttggt
ttttggaggctaacttcttgagttcttttttatatattttggatatgata
aatggaacctcatacaatgtaggaaattctgtaagacaaaggacaccatt
aataagacaaatcggcaacattaagattgggaataatctcttcactaaca
ctacattcaatatttttcaatatctaaattgtctctttcccttttttcct
tgatcccaaagatagatacatttaagcataagtatgttggtcctgttatt
tgaatcttgtataagttcatgttttaagatgtattgttactcttgatttg
atcaccgtatccccagctctagtgtacatatattttggataaatgtaggg
agttttaaataaaaacattaatgatctctggaaatcaagatgcaattgaa
ctttaaaaccatttaacttatttcagatgaatagtggcactgatgacttt
gggaattcttcttgaaactcatgaccaaaacagtttcttatttagatctt
tttgtccatggagacaagtatttttaagggtaccttcagttttgatagat
agcatatggttttaaatattcatttccaaaaaggttgaaaatttgtgctg
ttgttatttcttatgatcttcaaaacttcatagccataatcaatctctta
tccagagaatatttttacagcaacaacaacaataacacaaattaacctag
gtttgtaatgacctaaaaatttctcattcctggaaatatctcattcctgg
aaatgtcttaaaagagggctttgggctttgattaggtgtttttttttttt
ttttctcttttatctcattattatgatttgttgaaattgcttagtgcata
tggatgatttaccatagtagattgttcacatcagagttagacttaaggaa
aagaagcagtacttgtctatacaataccatcataaatgatattcagtatg
caaaggtgatcttacctcttggggaaactactaacagtatattcacagct
gtcattggttaatagcggtgatgccaccgggttttactgt
gaattcacctcatattcttaactaagggaaatgctctgagtctctcagat
gtcactagtgaaaatttgtcttggttattcatgttttccttttttaattg
agataactgtcagatatctgggtgattagtatgcataatatgcaaatatg
ctataaagaattccatatgttctacaatgtgttttacttttttaactatt
atataatcatttgaagttgacataggcacctgacaattcttaaaaaggtc
atttatttttaaattattcaagataacaataaaactcatttttaaagtcg
ccttagttttaaatgtgtgtgtgtaaaattattttgaggaatacaggagg
atttagttatacatgaaaatgagggtctatcaatgattaatataatccaa
tttaggtcagagattcaggattttattagcttatatacattgaaattttt
ttttgcaatctattatttcctgcctgacagtaaagaaaaatgttctagta
agacttatttaaaattttcattagtattcttaagtttttttagattcata
atattaaatattttttcgctggatggttttagctcccttttcaaagatca
agtcaccataggtgtgtgggttcatttctgggtcttcaaggctattccat
tggtctaattgtctgtcatataccagtaccatgcaattttgatcacattt
gctctgtagtacagctttagatctggcatagtgataccaactgaggttct
tttatccttgagaagaatttttgctaccctaagatttttgttattccgga
taaatttggagattgccctttccaatttgttgaagaattgagttagaatt
ttgatgggggttgcattgagtctgtagattgcttttgcaagatggccatt
gttactatattgatcctgccaactcatgaggatgggagatctatccatct
tctgagatctttattctttcttcagagacttgaaggtcttatcatacaga
tctttcactgccttagttagatccacaccaagttaggttctcctattctt
tgttggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_83732999_83734090
seq2: B6Ng01-212A21.b_36_1125 (reverse)

seq1  ACAGTAAAAACACAGTGGCATTAAACAGCTATTAAACAAAGGACAGCTGT  50
      ||||| ||||| | |||||||   || |||||| ||| || |||||||||
seq2  ACAGT-AAAACCCGGTGGCAT--CACCGCTATT-AACCAATGACAGCTGT  46

seq1  GAATTATATTGTTAGTAGTTT-CCCAAGA-GTAAGATCA-CTTTGCATTA  97
      ||| |||| |||||||||||| ||||||| ||||||||| ||||||| ||
seq2  GAA-TATACTGTTAGTAGTTTCCCCAAGAGGTAAGATCACCTTTGCA-TA  94

seq1  CTGAATATCATTTATGATGGTATTGTATTAGACAAGTACTGCTTTCTTTT  147
      ||||||||||||||||||||||||||| |||||||||||||| |||||||
seq2  CTGAATATCATTTATGATGGTATTGTA-TAGACAAGTACTGC-TTCTTTT  142

seq1  CCTTAAGTCTAACTCTGATGTGAACAATCTACTAT-GTAAATCATCCATA  196
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CCTTAAGTCTAACTCTGATGTGAACAATCTACTATGGTAAATCATCCATA  192

seq1  TGCACTAAGCAATTTCAACAAATCATAATAATGAGATAAAAGAG--AAAA  244
      ||||||||||||||||||||||||||||||||||||||||||||  ||||
seq2  TGCACTAAGCAATTTCAACAAATCATAATAATGAGATAAAAGAGAAAAAA  242

seq1  AAAAAAAAAACACCTAATCAAAGCCCAAAGCCCTCTTTTAAGACATTTCC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAACACCTAATCAAAGCCCAAAGCCCTCTTTTAAGACATTTCC  292

seq1  AGGAATGAGATATTTCCAGGAATGAGAAATTTTTAGGTCATTACAAACCT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGAGATATTTCCAGGAATGAGAAATTTTTAGGTCATTACAAACCT  342

seq1  AGGTTAATTTGTGTTATTGTTGTTGTTGCTGTAAAAATATTCTCTGGATA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTAATTTGTGTTATTGTTGTTGTTGCTGTAAAAATATTCTCTGGATA  392

seq1  AGAGATTGATTATGGCTATGAAGTTTTGAAGATCATAAGAAATAACAACA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTGATTATGGCTATGAAGTTTTGAAGATCATAAGAAATAACAACA  442

seq1  GCACAAATTTTCAACCTTTTTGGAAATGAATATTTAAAACCATATGCTAT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAATTTTCAACCTTTTTGGAAATGAATATTTAAAACCATATGCTAT  492

seq1  CTATCAAAACTGAAGGTACCCTTAAAAATACTTGTCTCCATGGACAAAAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCAAAACTGAAGGTACCCTTAAAAATACTTGTCTCCATGGACAAAAA  542

seq1  GATCTAAATAAGAAACTGTTTTGGTCATGAGTTTCAAGAAGAATTCCCAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTAAATAAGAAACTGTTTTGGTCATGAGTTTCAAGAAGAATTCCCAA  592

seq1  AGTCATCAGTGCCACTATTCATCTGAAATAAGTTAAATGGTTTTAAAGTT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATCAGTGCCACTATTCATCTGAAATAAGTTAAATGGTTTTAAAGTT  642

seq1  CAATTGCATCTTGATTTCCAGAGATCATTAATGTTTTTATTTAAAACTCC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGCATCTTGATTTCCAGAGATCATTAATGTTTTTATTTAAAACTCC  692

seq1  CTACATTTATCCAAAATATATGTACACTAGAGCTGGGGATACGGTGATCA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATTTATCCAAAATATATGTACACTAGAGCTGGGGATACGGTGATCA  742

seq1  AATCAAGAGTAACAATACATCTTAAAACATGAACTTATACAAGATTCAAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAGAGTAACAATACATCTTAAAACATGAACTTATACAAGATTCAAA  792

seq1  TAACAGGACCAACATACTTATGCTTAAATGTATCTATCTTTGGGATCAAG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGGACCAACATACTTATGCTTAAATGTATCTATCTTTGGGATCAAG  842

seq1  GAAAAAAGGGAAAGAGACAATTTAGATATTGAAAAATATTGAATGTAGTG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAGGGAAAGAGACAATTTAGATATTGAAAAATATTGAATGTAGTG  892

seq1  TTAGTGAAGAGATTATTCCCAATCTTAATGTTGCCGATTTGTCTTATTAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGAAGAGATTATTCCCAATCTTAATGTTGCCGATTTGTCTTATTAA  942

seq1  TGGTGTCCTTTGTCTTACAGAATTTCCTACATTGTATGAGGTTCCATTTA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTCCTTTGTCTTACAGAATTTCCTACATTGTATGAGGTTCCATTTA  992

seq1  TCATATCCAAAATATATAAAAAAGAACTCAAGAAGTTAGCCTCCAAAAAC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATCCAAAATATATAAAAAAGAACTCAAGAAGTTAGCCTCCAAAAAC  1042

seq1  CAAAATAACCCAATTAAAAAATGTGGTCTAGAGCTAAGCAGAGAATTC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAACCCAATTAAAAAATGTGGTCTAGAGCTAAGCAGAGAATTC  1090

seq1: chr5_83563843_83564901
seq2: B6Ng01-212A21.g_64_1121

seq1  GAATTCACCTCATATTCTTAACTAAGGGAAATGCTCTGAGTCTCTCAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTCATATTCTTAACTAAGGGAAATGCTCTGAGTCTCTCAGAT  50

seq1  GTCACTAGTGAAAATTTGTCTTGGTTATTCATGTTTTCCTTTTTTAATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTAGTGAAAATTTGTCTTGGTTATTCATGTTTTCCTTTTTTAATTG  100

seq1  AGATAACTGTCAGATATCTGGGTGATTAGTATGCATAATATGCAAATATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAACTGTCAGATATCTGGGTGATTAGTATGCATAATATGCAAATATG  150

seq1  CTATAAAGAATTCCATATGTTCTACAATGTGTTTTACTTTTTTAACTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAAGAATTCCATATGTTCTACAATGTGTTTTACTTTTTTAACTATT  200

seq1  ATATAATCATTTGAAGTTGACATAGGCACCTGACAATTCTTAAAAAGGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATCATTTGAAGTTGACATAGGCACCTGACAATTCTTAAAAAGGTC  250

seq1  ATTTATTTTTAAATTATTCAAGATAACAATAAAACTCATTTTTAAAGTCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTTTAAATTATTCAAGATAACAATAAAACTCATTTTTAAAGTCG  300

seq1  CCTTAGTTTTAAATGTGTGTGTGTAAAATTATTTTGAGGAATACAGGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGTTTTAAATGTGTGTGTGTAAAATTATTTTGAGGAATACAGGAGG  350

seq1  ATTTAGTTATACATGAAAATGAGGGTCTATCAATGATTAATATAATCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGTTATACATGAAAATGAGGGTCTATCAATGATTAATATAATCCAA  400

seq1  TTTAGGTCAGAGATTCAGGATTTTATTAGCTTATATACATTGAAATTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGTCAGAGATTCAGGATTTTATTAGCTTATATACATTGAAATTTTT  450

seq1  TTTTGCAATCTATTATTTCCTGCCTGACAGTAAAGAAAAATGTTCTAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCAATCTATTATTTCCTGCCTGACAGTAAAGAAAAATGTTCTAGTA  500

seq1  AGACTTATTTAAAATTTTCATTAGTATTCTTAAGTTTTTTTAGATTCATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTATTTAAAATTTTCATTAGTATTCTTAAGTTTTTTTAGATTCATA  550

seq1  ATATTAAATATTTTTTCGCTGGATGGTTTTAGCTCCCTTTTCAAAGATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAAATATTTTTTCGCTGGATGGTTTTAGCTCCCTTTTCAAAGATCA  600

seq1  AGTCACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAAGGCTATTCCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAAGGCTATTCCAT  650

seq1  TGGTCTAATTGTCTGTCATATACCAGTACCATGCAATTTTGATCACATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTAATTGTCTGTCATATACCAGTACCATGCAATTTTGATCACATTT  700

seq1  GCTCTGTAGTACAGCTTTAGATCTGGCATAGTGATACCAACTGAGGTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGTAGTACAGCTTTAGATCTGGCATAGTGATACCAACTGAGGTTCT  750

seq1  TTTATCCTTGAGAAGAATTTTTGCTACCCTAAGATTTTTGTTATTCCGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCCTTGAGAAGAATTTTTGCTACCCTAAGATTTTTGTTATTCCGGA  800

seq1  TAAATTTGGAGATTGCCCTTTCCAATTTGTTGAAGAATTGAGTTAGAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTGGAGATTGCCCTTTCCAATTTGTTGAAGAATTGAGTTAGAATT  850

seq1  TTGATGGGGGTTGCATTGAGTCTGTAGATTGCTTTTTGCAAGATGGCCAT  900
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTGATGGGGGTTGCATTGAGTCTGTAGATTGC-TTTTGCAAGATGGCCAT  899

seq1  TGTTACTATATTGATCCTGCCAACTCATGAGGATGGGAGATCTATCCATC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACTATATTGATCCTGCCAACTCATGAGGATGGGAGATCTATCCATC  949

seq1  TTCTGAGATCTTTAATTTCTTTCTTCAGAGACTTGAAGTTCTTATCATAC  1000
      ||||||||||||||  |||||||||||||||||||||| |||||||||||
seq2  TTCTGAGATCTTTA--TTCTTTCTTCAGAGACTTGAAGGTCTTATCATAC  997

seq1  AGATCTTTCACTGCCTTAGTTAGAATCACACCAAGTTAAGTTCT-CTA-T  1048
      ||||||||||||||||||||||||  |||||||||||| ||||| ||| |
seq2  AGATCTTTCACTGCCTTAGTTAGATCCACACCAAGTTAGGTTCTCCTATT  1047

seq1  CTTTGTTGGGT  1059
      ||||||||| |
seq2  CTTTGTTGGAT  1058