BAC Information

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BAC

Clone NameB6Ng01-212D20
Chromosome5 (Build37)
Map Location 133,721,036 - 133,722,181
singlet/doubletsinglet
Overlap genenone
Upstream geneAuts2
Downstream geneLOC100039731, LOC666038, LOC100039750, Gats, Wbscr16, Gtf2ird2, Ncf1, Gtf2i
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-212D20.bB6Ng01-212D20.g
ACCGA030085GA030086
length1,1611,130
definitionB6Ng01-212D20.b B6Ng01-212D20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccaaatggctgagaagcacctgaaaaaatg
ttcaatatccttaatcatcaggggaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaggatcaaaaatttaggtgacagc
agttgctggcgaggatgtggagaaagaggaacactcctccattgctggtg
gaattgcaagcttatacaaccattctggaaatcagtctggcagttactca
gaaaactggacatagtactacctgtagatccagcaatacttctcctgggc
atatacccagaagatgttccaaatggtaagaaggacacattttccactat
gttcatagcagccctatttataatagccagaagctggaaagaacccagat
gtccctcaacagaggaatggatgcagaaaatatggtacatttacacaata
gagtactactcagctattagaaacaatgaatttatgaaattcttgggcaa
atggatgtatctggaggataccatcctgagtgaggtaacccaatcacaaa
agaagtcacttgatatgcactcactaataagtggatattagcccagaaac
ctagaatacccaagatacaatttcaaaaacacaagaaaatcaagaaggaa
gaccaatgcgtggatacttcattcctccctagaataggaaataaaatgtc
catggaaggagttgcagagacaaagtttggagctaagaggaaaggatgga
ccatcgagagactgccccacctgtggtccatcccataatcagccaccaaa
cgcagacactattgaatatgccagaaagattttgctgaaatagctgtctc
ctgtgaggctttgccagtgcctggcaattacagaagtggatgctcacagt
catccataaggatggaacacagtgcccccaatggagggagctagagaaag
ttacacatttagctgaggtgtctgcaaccctacggggtggacacaatatt
aactaatcagtacccctgagctcatgttctcttagctgcatatcggcaga
agatggcctagtcggtaatcattgaaaagagaggccccttggacttagca
aacttatatgcccagtacagggaatgctagggccaagattggagtgggtg
gggtatacgcg
gaattcaggtccctggatgcaggcaaggagcaatgataagaatgcattga
tccagatacactggagactgagctctcggatcagagagcagaacagacca
tcactgtgacctcacaaaagaaaaacaatatggaaaaataggaagtttat
tgccgtttatttcccctttattttctttttttcttctttctgcagtatat
gcataaaatactggcttacacacacacacgtgcacacacataaacacata
catacatataattacctcatgtagtaaaaacctgagatttcatgtcaaac
aatccacccacaatctagagagaaatgaacgtctgcaaaaataagcaagc
tatgagcatttgttttcctgagtagatgtcacttgatcaaataaaaatgt
gtaggaagattcagctaaggaatgttagcaaatagctggaatttgtttgt
gcaagctagtgagtgagtgggacattctatgagatgggtaatatcctagt
ttctcttgtgaaaaatgcctggatgaaaagcaaattatggtattatttaa
aataaaagcatttattttggctcacaattctgggttatggtccaccatgg
caagaagtcagggcaggaacttgagcagccaatcatattaaaaccacacc
aagagtagagggaaaatgaatgtgtacatgttttcttgcttgcttgtggc
caggtcaagcactcatttatagacagttcaggctccatgtctaagcaata
gggccacccactgtgagcttggtctttacatgtcaactgacttaatataa
tttcctacagacacactcatagttcagtccaatatagacaatcccccact
aaggtgttcttcccagatgattcaaggatgtgttgatcccttaaagctaa
tgcacagagatatagatagagggaagtatgacctgctaaaactgtttcca
agggaatctcgctgggcccatgaaagcttcccacattatgttggttatat
gagaaacggagcctgctgattccaccagaccagtgtgccataattcctct
tagacaaaagcttactctgcatcagctagaacaaggaggctatagccaca
gaccagtgaaattcaaatagcctggaactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_133721036_133722181
seq2: B6Ng01-212D20.g_64_1193

seq1  GAATTCAGGTCCCTGGATGCAGGCAAGGAGCAATGATAAGAATGCATTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTCCCTGGATGCAGGCAAGGAGCAATGATAAGAATGCATTGA  50

seq1  TCCAGATACACTGGAGACTGAGCTCTCGGATCAGAGAGCAGAACAGACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGATACACTGGAGACTGAGCTCTCGGATCAGAGAGCAGAACAGACCA  100

seq1  TCACTGTGACCTCACAAAAGAAAAACAATATGGAAAAATAGGAAGTTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGTGACCTCACAAAAGAAAAACAATATGGAAAAATAGGAAGTTTAT  150

seq1  TGCCGTTTATTTCCCCTTTATTTTCTTTTTTTCTTCTTTCTGCAGTATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGTTTATTTCCCCTTTATTTTCTTTTTTTCTTCTTTCTGCAGTATAT  200

seq1  GCATAAAATACTGGCTTACACACACACACGTGCACACACATAAACACATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAAATACTGGCTTACACACACACACGTGCACACACATAAACACATA  250

seq1  CATACATATAATTACCTCATGTAGTAAAAACCTGAGATTTCATGTCAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATATAATTACCTCATGTAGTAAAAACCTGAGATTTCATGTCAAAC  300

seq1  AATCCACCCACAATCTAGAGAGAAATGAACGTCTGCAAAAATAAGCAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCACCCACAATCTAGAGAGAAATGAACGTCTGCAAAAATAAGCAAGC  350

seq1  TATGAGCATTTGTTTTCCTGAGTAGATGTCACTTGATCAAATAAAAATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGCATTTGTTTTCCTGAGTAGATGTCACTTGATCAAATAAAAATGT  400

seq1  GTAGGAAGATTCAGCTAAGGAATGTTAGCAAATAGCTGGAATTTGTTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGAAGATTCAGCTAAGGAATGTTAGCAAATAGCTGGAATTTGTTTGT  450

seq1  GCAAGCTAGTGAGTGAGTGGGACATTCTATGAGATGGGTAATATCCTAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCTAGTGAGTGAGTGGGACATTCTATGAGATGGGTAATATCCTAGT  500

seq1  TTCTCTTGTGAAAAATGCCTGGATGAAAAGCAAATTATGGTATTATTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTGTGAAAAATGCCTGGATGAAAAGCAAATTATGGTATTATTTAA  550

seq1  AATAAAAGCATTTATTTTGGCTCACAATTCTGGGTTATGGTCCACCATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAGCATTTATTTTGGCTCACAATTCTGGGTTATGGTCCACCATGG  600

seq1  CAAGAAGTCAGGGCAGGAACTTGAGCAGCCAATCATATTAAAACCACACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGTCAGGGCAGGAACTTGAGCAGCCAATCATATTAAAACCACACC  650

seq1  AAGAGTAGAGGGAAAATGAATGTGTACATGTTTTCTTGCTTGCTTGTGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTAGAGGGAAAATGAATGTGTACATGTTTTCTTGCTTGCTTGTGGC  700

seq1  CAGGTCAAGCACTCATTTATAGACAGTTCAGGCTCCATGTCTAAGCAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCAAGCACTCATTTATAGACAGTTCAGGCTCCATGTCTAAGCAATA  750

seq1  GGGCCACCCACTGTGAGCTTGGTCTTTACATGTCAACTGACTTAATATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCACCCACTGTGAGCTTGGTCTTTACATGTCAACTGACTTAATATAA  800

seq1  TTTCCTACAGACACACTCATAGTTCAGTCCAATATAGACAATCCCCCACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTACAGACACACTCATAGTTCAGTCCAATATAGACAATCCCCCACT  850

seq1  AAGGTGTTCTTCCCAGATGATTCAAGGATGTGTTGATCCCTTAAAGCTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGTTCTTCCCAGATGATTCAAGGATGTGTTGATCCCTTAAAGCTAA  900

seq1  TGCACAGAGATATAGATAGAGGGAAGTATGACCTGCTAAAACTGTTTCCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAGAGATATAGATAGAGGGAAGTATGACCTGCTAAAACTGTTTCCA  950

seq1  AGGGAATCTCGCT-GGCCCATGAAAGCTTCCCACATTATGTTGGTTATAT  999
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGGGAATCTCGCTGGGCCCATGAAAGCTTCCCACATTATGTTGGTTATAT  1000

seq1  GAGGAAACGGGAGCCTTGGCTGGAATTCCACCAAGACCAGTGTGCCATAT  1049
      || ||||| |||||||  ||||  |||||||| |||||||||||||||| 
seq2  GA-GAAAC-GGAGCCT--GCTG--ATTCCACC-AGACCAGTGTGCCATAA  1043

seq1  TTCCTCTAAGGAACAAAAGCTTTACTCTGCATCAGGCTAGAACAAGGGAA  1099
      ||||||| ||  |||||||| ||||||||||||| |||||||||| ||| 
seq2  TTCCTCTTAG--ACAAAAGC-TTACTCTGCATCA-GCTAGAACAA-GGAG  1088

seq1  GCTATAGGCCACAGACCCAAGTGGAAATTCAATATAG-CTGGAGACTG  1146
      |||||| ||||||||||  ||| ||||||||| |||| ||||| ||||
seq2  GCTATA-GCCACAGACC--AGT-GAAATTCAA-ATAGCCTGGA-ACTG  1130