BAC Information

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BAC

Clone NameB6Ng01-212O18
Chromosome5 (Build37)
Map Location 11,315,638 - 11,316,811
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041395, EG625586, LOC242809, LOC623849, LOC100041408, LOC667880, EG667888, EG667901, EG667907, LOC667916, LOC100041472, EG545728, LOC100042819, LOC667942, LOC667948, EG667949
Downstream geneSpeer1-ps1, EG667956, LOC667961, EG667967, LOC100042858, LOC667974, EG667986, EG623898, EG668001, LOC668008, EG668011, LOC668017, EG668021, LOC623998, EG668043, LOC545732, LOC384144, LOC100041626
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-212O18.bB6Ng01-212O18.g
ACCGA030594GA030595
length1,1821,161
definitionB6Ng01-212O18.b B6Ng01-212O18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaacggaggaatcacaaatggctgaaaaacacttaaagaaatg
ttcaacatccttagtcattaggaaaatacaagtgaaaacaaccttgagat
tccacctcaaacaagtcatattggctaagatcaaatatgtaggtgacagc
agatgttgaacaggccctggagaaagagaaacactcctccactgctggta
ggacagcaagctggtaaaaccactttggaaatcaatctggtggttcctga
gaaagttggaaatagttttacctaaagacccagcaatacctctcctaagc
atatacccaaaaaatattccaacatataacaaggactcctgctccagtat
gcttgtagcagtcttatgtaaaatagccagaagctggaaacaacccagat
ttccctcaacagaagaatggatacagaaaatgtggtacattcacagaatg
gagtactagtcagctattaaaaacaatgacttcataaaattcgaaggcaa
ttggaaggaaactagaaaatatcatcctgagtgaggtaaaccagacacaa
aagaacacacatgtatgtattcactgataagtggatattaacccaaaaat
aacaatgctcatgatacaacccacagaacatatggtgcttagaaggaaga
ccagagtatggatgcttcagtccttcattaaggggagaacagatgatcat
atgagatggaggtagaatgggacctaggagagacagaggaagggaaggaa
ataaggggatgggggcaagtataaggtactgaaagggaggggagacaggt
acaaagggccaagaaaaaaagagtatgaaaaaaaaagggtcaggaaattg
aacaaaaatatgtaggggttggggggtgaggaacagaggatagcctcttg
tggtctcagacatcatgtaatcgtgaggctccagacacaaaggggatgac
ttagcaaaatgcacagttgaagggagataaacctgtagagacaactcaga
aggatagctggttctctgcctacccactcgattatgccttgtcaagttgg
ttacatccaccgtctcatagtataaccagatgcttcctgaaccacgagac
tgtacaagatgagccaggctgtacgaggtcatcatgactgccttacatgg
aatcagtcaggtctgacgtaagaacttaagta
gaattcccaccccttgattcttgtagatatcaatgcattctttaattaaa
tacttatttaaaatagtgaattttatactgattaccctggataatgctca
gatttcttatcagttagattgagaaatgcccattggactttcattgcatc
ttgagtatactatttctgtcattgaaatagctttacacatttgaatttta
attttcttcatcagaacctacaaactttctcatatttccgtgaaaatttg
gtaccagagagtatttctgcagctcacattcctgaactagaaattgatgt
aagcgactgtgatgcccatgactcctaagagaattgttcttatcctttac
tctcaaatttcataagatttagagataagatgagcaattatgaaataagc
acatcagacacagttttgtatttttatgaaaaagatgtttcaacggacta
tggatacacttgatccaaaatatgcaactgcaactttggtcagagaattg
tgagagatcagcttacagtgtagattctcatgtggatggaagatatgcga
cacacattccttaagtcatgcacaaatgtgataacatacagtggtttata
agacaactttaaatgttgtgagttccttgaagataaagattgttccttat
tcatatatgtacatattacacacacagtatgtccctgaaaagttctttat
gatgaagttatgcttattgaatttgctgttttgagttatactacttcact
agagtgaatatagaagtctgtaaacctaggtcagtgccatgcgtaggaat
cccatgaagagcttaataaatatctcattttttttctatgatattctttt
tctatgtgacatagacaattaattcaattaggaatgagttagcagtataa
aataaaaataggtaaaaaagaggaaaatataacagaaattttgggttata
aaaagaaagtagcactagaaaagaaagttatatttatttaacatttttta
gtttttctttatagatatcttctttaattatatttcaaatgtttatcccc
gttttctaggctccctctgaaaattccctattcccttaccgtctcccctg
gctccctatccacccaatccaatctgctgacgttccccttatactggcat
agagcccttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_11315638_11316811
seq2: B6Ng01-212O18.g_67_1227 (reverse)

seq1  TGAA-GGCTCTATGCCCCAGTAT-AGGGGAATGTCAGGGCCAGGATTGGG  48
      |||| |||||||||  ||||||| ||||||| |||||   || |||| ||
seq2  TGAAGGGCTCTATG--CCAGTATAAGGGGAACGTCAG---CA-GATT-GG  43

seq1  AGTGGGTGGGTTGGGGAGCAGGGGGAGAGGGT-AGGGGATAGGGGATTTT  97
      | ||||| || | ||||||  ||||||| ||| |||| |||||| |||||
seq2  ATTGGGT-GGATAGGGAGCCAGGGGAGACGGTAAGGGAATAGGGAATTTT  92

seq1  CAGAGGGGAAACTAGAAAA-GGGGAT-AACATTTGAAATATAAATAAAGA  145
      |||| ||||  |||||||| |||||| |||||||||||||||| ||||||
seq2  CAGA-GGGAGCCTAGAAAACGGGGATAAACATTTGAAATATAATTAAAGA  141

seq1  AGATATCTTATTAAAGAAAAACCTAAAAAATGTTAAATAAATATAACCTT  195
      ||||||||   |||||||||| |||||||||||||||||||||||||  |
seq2  AGATATCT--ATAAAGAAAAA-CTAAAAAATGTTAAATAAATATAAC--T  186

seq1  TTCTTTTCTTAGTTGCTACTTTTCTTTTTATAA-CCAAAATTTCTGTTAT  244
      |||||||| ||| |||||| ||||||||||||| ||||||||||||||||
seq2  TTCTTTTC-TAG-TGCTAC-TTTCTTTTTATAACCCAAAATTTCTGTTAT  233

seq1  ATTTTTCCTCTTTTTTACCTTATTTTTATTTTATACTGCTAACTCATTCC  294
      | ||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  A-TTTTCCTCTTTTTTACC-TATTTTTATTTTATACTGCTAACTCATTCC  281

seq1  TAATTGAATTAATTGTCTATGTCACATAGAAAAAGAATATCATAG-AAAA  343
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TAATTGAATTAATTGTCTATGTCACATAGAAAAAGAATATCATAGAAAAA  331

seq1  AAATGAGATATTTTATTAAGCTCTTCATGGGATTCCTACGCATGGCACTG  393
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGATA-TTTATTAAGCTCTTCATGGGATTCCTACGCATGGCACTG  380

seq1  ACCTAGGTTTACAGACTTCTATATTCACTCTAGTGAAGTAGTATAACTCA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGGTTTACAGACTTCTATATTCACTCTAGTGAAGTAGTATAACTCA  430

seq1  AAACAGCAAATTCAATAAGCATAACTTCATCATAAAGAACTTTTCAGGGA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCAAATTCAATAAGCATAACTTCATCATAAAGAACTTTTCAGGGA  480

seq1  CATACTGTGTGTGTAATATGTACATATATGAATAAGGAACAATCTTTATC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTGTGTGTGTAATATGTACATATATGAATAAGGAACAATCTTTATC  530

seq1  TTCAAGGAACTCACAACATTTAAAGTTGTCTTATAAACCACTGTATGTTA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGGAACTCACAACATTTAAAGTTGTCTTATAAACCACTGTATGTTA  580

seq1  TCACATTTGTGCATGACTTAAGGAATGTGTGTCGCATATCTTCCATCCAC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATTTGTGCATGACTTAAGGAATGTGTGTCGCATATCTTCCATCCAC  630

seq1  ATGAGAATCTACACTGTAAGCTGATCTCTCACAATTCTCTGACCAAAGTT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAATCTACACTGTAAGCTGATCTCTCACAATTCTCTGACCAAAGTT  680

seq1  GCAGTTGCATATTTTGGATCAAGTGTATCCATAGTCCGTTGAAACATCTT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTGCATATTTTGGATCAAGTGTATCCATAGTCCGTTGAAACATCTT  730

seq1  TTTCATAAAAATACAAAACTGTGTCTGATGTGCTTATTTCATAATTGCTC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATAAAAATACAAAACTGTGTCTGATGTGCTTATTTCATAATTGCTC  780

seq1  ATCTTATCTCTAAATCTTATGAAATTTGAGAGTAAAGGATAAGAACAATT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTATCTCTAAATCTTATGAAATTTGAGAGTAAAGGATAAGAACAATT  830

seq1  CTCTTAGGAGTCATGGGCATCACAGTCGCTTACATCAATTTCTAGTTCAG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAGGAGTCATGGGCATCACAGTCGCTTACATCAATTTCTAGTTCAG  880

seq1  GAATGTGAGCTGCAGAAATACTCTCTGGTACCAAATTTTCACGGAAATAT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTGAGCTGCAGAAATACTCTCTGGTACCAAATTTTCACGGAAATAT  930

seq1  GAGAAAGTTTGTAGGTTCTGATGAAGAAAATTAAAATTCAAATGTGTAAA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGTTTGTAGGTTCTGATGAAGAAAATTAAAATTCAAATGTGTAAA  980

seq1  GCTATTTCAATGACAGAAATAGTATACTCAAGATGCAATGAAAGTCCAAT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTTCAATGACAGAAATAGTATACTCAAGATGCAATGAAAGTCCAAT  1030

seq1  GGGCATTTCTCAATCTAACTGATAAGAAATCTGAGCATTATCCAGGGTAA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATTTCTCAATCTAACTGATAAGAAATCTGAGCATTATCCAGGGTAA  1080

seq1  TCAGTATAAAATTCACTATTTTAAATAAGTATTTAATTAAAGAATGCATT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTATAAAATTCACTATTTTAAATAAGTATTTAATTAAAGAATGCATT  1130

seq1  GATATCTACAAGAATCAAGGGGTGGGAATTC  1174
      |||||||||||||||||||||||||||||||
seq2  GATATCTACAAGAATCAAGGGGTGGGAATTC  1161