BAC Information

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BAC

Clone NameB6Ng01-213F07
Chromosome5 (Build37)
Map Location 12,149,470 - 12,306,895
singlet/doubletdoublet
Overlap geneLOC100041626
Upstream geneEG545728, LOC100042819, LOC667942, LOC667948, EG667949, Speer1-ps1, EG667956, LOC667961, EG667967, LOC100042858, LOC667974, EG667986, EG623898, EG668001, LOC668008, EG668011, LOC668017, EG668021, LOC623998, EG668043, LOC545732, LOC384144
Downstream geneEG668059, Sema3d, LOC668015, LOC100042917, LOC668069, LOC433845, LOC625989, LOC670717
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-213F07.bB6Ng01-213F07.g
ACCGA030888GA030889
length1,204963
definitionB6Ng01-213F07.b B6Ng01-213F07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,149,470 - 12,150,670)(12,306,057 - 12,306,895)
sequence
gaattctctagtcctaagaatactcaaaataatagtttgtaaatattaga
cagtaagtacccttcatgccttcattgataatgactggaggaattaattt
ctttcagaccttctgtcaatgaaatatacagctagtctgcaattaatgaa
agaagcagttttactataaatgaaattaaggtggcactgacatgaaatga
attagtgagcactataacgaccaaaacagaactggttttccataaatatt
agataccttgaatttctatttaattgtatttaatgccaaacattgaggag
taattttccattcccctgcagaaaatgcaatgttttgttctctcctaaaa
tatatttttactgatctctggataaattaaataatcagcaagcatttgag
tgcctagtttgtgtccactgaatcacaaaatatatgtatggcacatacta
cacaaatattattcttttcaaagtatttctttagcaaggacagcaactgg
tttccaactctttaaacctattttctagtcagattctctgataaagtgga
tatgccttaccaaccaactatttaaacaaaatatttaaacagagttttct
gaatattggcttgatgtagtttcttatcataccttggctaaaattcagca
atgtgaagcaaagttgataagtttgccagtatttatacctgaactttgaa
gcttaaggttattttgaatatattttattcaaatatatatgagtcgatta
tacattttatgtattttaaaagattttgatagtacttgctatcaatgtaa
aaacaacctcaaacattttacctcaaagtgttattataccttagtataaa
tattgaagtctttaacgttcaaaatatttcccagaataagctttttatat
tgacataattttttttaaaacttgtccctgaggaaaatcatctgcagata
cagatctccatatttcatttccagtcgctaacagtacagcataagctgct
gcacaggcaagctttccagtcgctaacagtacagcatagctgctgcacag
caagctttcagtcgctacagtacaggcatagctgctggcacaaggcaagc
tttcaggtcactaacagtacagttataagctgcaccagcagctttccttg
gaagagttcacaaggtctaacattcaactgaatgtagacgtttagaatac
aaaa
gaattcccaccttgtggagcctcaagtctctcaagggttaggtgtgtctt
ctttcactgaggccaagtcagacagtcctctgcttgtgtgtgtcagagag
ctctgaccagctagtgtgtgctgcctggttatattcttaatcctaaagaa
attgagtttaattttttttagggaaacatctttaaaaatgtattttaaat
tttttaacatattaatatattttgaagaagataataattgtatactacaa
agagaaatttgcattgcatacaaattttattttatttcttattttcttga
aaagctgaggtttatggagaagtagggttgtacaatgcactatttggaac
cgtaaagatcatgagttcaagatgtctgacagtgagctttctgctattag
gccagttttgctttgatttgaaggtaacagtgctatagttcttacctctt
agagtaagagcataagtttgttattttattgcacaagaacccacggttaa
ttgacactggacttttaggaatacttgaatattttaatgaaacgttgggc
ttttaagtattgacattttaaagactgttggacttttaaattttagtatc
ttgaaggtaagaaaggaaaggttatagtgatgtgtttgtgtttcagaaaa
agggctaattgttcagattcattttgtttgtttgtttagttgttcatttc
agttttgttttttgcggcattaataggatctggattttatctggagaaac
cacaattgagaaaatgcctccctcagattgtctttagactagcctgtgaa
ggggaatattttttttcttgattactgattgatatgaatggggcctattc
aatgggttgggagcatctctcccccttagtagatgggccctcactggtgg
gtataattaagcaagggttgaacaagccttgagtagcaagcaaaagtctg
cattcctccatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_12149470_12150670
seq2: B6Ng01-213F07.b_46_1249

seq1  GAATTCTCTAGTCCTAAGAATACTCAAAATAATAGTTTGTAAATATTAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAGTCCTAAGAATACTCAAAATAATAGTTTGTAAATATTAGA  50

seq1  CAGTAAGTACCCTTCATGCCTTCATTGATAATGACTGGAGGAATTAATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAGTACCCTTCATGCCTTCATTGATAATGACTGGAGGAATTAATTT  100

seq1  CTTTCAGACCTTCTGTCAATGAAATATACAGCTAGTCTGCAATTAATGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGACCTTCTGTCAATGAAATATACAGCTAGTCTGCAATTAATGAA  150

seq1  AGAAGCAGTTTTACTATAAATGAAATTAAGGTGGCACTGACATGAAATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAGTTTTACTATAAATGAAATTAAGGTGGCACTGACATGAAATGA  200

seq1  ATTAGTGAGCACTATAACGACCAAAACAGAACTGGTTTTCCATAAATATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTGAGCACTATAACGACCAAAACAGAACTGGTTTTCCATAAATATT  250

seq1  AGATACCTTGAATTTCTATTTAATTGTATTTAATGCCAAACATTGAGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACCTTGAATTTCTATTTAATTGTATTTAATGCCAAACATTGAGGAG  300

seq1  TAATTTTCCATTCCCCTGCAGAAAATGCAATGTTTTGTTCTCTCCTAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTCCATTCCCCTGCAGAAAATGCAATGTTTTGTTCTCTCCTAAAA  350

seq1  TATATTTTTACTGATCTCTGGATAAATTAAATAATCAGCAAGCATTTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTTACTGATCTCTGGATAAATTAAATAATCAGCAAGCATTTGAG  400

seq1  TGCCTAGTTTGTGTCCACTGAATCACAAAATATATGTATGGCACATACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAGTTTGTGTCCACTGAATCACAAAATATATGTATGGCACATACTA  450

seq1  CACAAATATTATTCTTTTCAAAGTATTTCTTTAGCAAGGACAGCAACTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATATTATTCTTTTCAAAGTATTTCTTTAGCAAGGACAGCAACTGG  500

seq1  TTTCCAACTCTTTAAACCTATTTTCTAGTCAGATTCTCTGATAAAGTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAACTCTTTAAACCTATTTTCTAGTCAGATTCTCTGATAAAGTGGA  550

seq1  TATGCCTTACCAACCAACTATTTAAACAAAATATTTAAACAGAGTTTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCTTACCAACCAACTATTTAAACAAAATATTTAAACAGAGTTTTCT  600

seq1  GAATATTGGCTTGATGTAGTTTCTTATCATACCTTGGCTAAAATTCAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTGGCTTGATGTAGTTTCTTATCATACCTTGGCTAAAATTCAGCA  650

seq1  ATGTGAAGCAAAGTTGATAAGTTTGCCAGTATTTATACCTGAACTTTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAAGCAAAGTTGATAAGTTTGCCAGTATTTATACCTGAACTTTGAA  700

seq1  GCTTAAGGTTATTTTGAATATATTTTATTCAAATATATATGAGTCGATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAGGTTATTTTGAATATATTTTATTCAAATATATATGAGTCGATTA  750

seq1  TACATTTTATGTATTTTAAAAGATTTTGATAGTACTTGCTATCAATGTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTTATGTATTTTAAAAGATTTTGATAGTACTTGCTATCAATGTAA  800

seq1  AAACAACCTCAAACATTTTACCTCAAAGTGTTATTATACCTTAGTATAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACCTCAAACATTTTACCTCAAAGTGTTATTATACCTTAGTATAAA  850

seq1  TATTGAAGTCTTTAACGTTCAAAATATTTCCCAGAATAAGCTTTTTATAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAAGTCTTTAACGTTCAAAATATTTCCCAGAATAAGCTTTTTATAT  900

seq1  TGACATAA-TTTTTTTAAAACTTGTCCCTGAGGAAAATCATCTGCAGATA  949
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGACATAATTTTTTTTAAAACTTGTCCCTGAGGAAAATCATCTGCAGATA  950

seq1  CAGATCTCCATA-TTCATTTCCAGTCGCTAACAGTACAGCAT-AGCTGCT  997
      |||||||||||| ||||||||||||||||||||||||||||| |||||||
seq2  CAGATCTCCATATTTCATTTCCAGTCGCTAACAGTACAGCATAAGCTGCT  1000

seq1  GCCACAGGCAAGCTTTCCAGTCGCTAACAGTACAGCATAGCTGCTGCCAC  1047
      | |||||||||||||||||||||||||||||||||||||||||||| |||
seq2  G-CACAGGCAAGCTTTCCAGTCGCTAACAGTACAGCATAGCTGCTG-CAC  1048

seq1  AGGCAAGCTTTCCAGTCGCTAACAGTACA-GCATAGCTGCTGCCAC-AGG  1095
      | ||||||||| |||||||| |||||||| |||||||||||| ||| |||
seq2  A-GCAAGCTTT-CAGTCGCT-ACAGTACAGGCATAGCTGCTGGCACAAGG  1095

seq1  CAAGCTTTCCAGTCACTAACAGTACAG-TAT-AGCTGCCACAGGCAAGCT  1143
      |||||||||  |||||||||||||||| ||| ||||||  |||   ||||
seq2  CAAGCTTTCAGGTCACTAACAGTACAGTTATAAGCTGCACCAG--CAGCT  1143

seq1  TTCCT---GAGAGTTCACAA-GTC-AACA-TCAACTGATTTGTAAGACGT  1187
      |||||    ||||||||||| ||| |||| ||||||||  ||| ||||| 
seq2  TTCCTTGGAAGAGTTCACAAGGTCTAACATTCAACTGA-ATGT-AGACG-  1190

seq1  TTTAAGATACAAAA  1201
      ||||  ||||||||
seq2  TTTAGAATACAAAA  1204

seq1: chr5_12306057_12306895
seq2: B6Ng01-213F07.g_68_909 (reverse)

seq1  CCCATTCATATCAATCAGTAATCA--GAAAAAAATATTCCCCTTCACAGG  48
      ||||||||||||||||||||||||   |||||||||||||||||||||||
seq2  CCCATTCATATCAATCAGTAATCAAGAAAAAAAATATTCCCCTTCACAGG  50

seq1  CTAGTCTAAAGACAATCTGAGGGAGGCATTTTCTCAATTGTGGTTTCTCC  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCTAAAGACAATCTGAGGGAGGCATTTTCTCAATTGTGGTTTCTCC  100

seq1  AGAT-AAATCCAGATCCTATTAATGCCGCAAAAAACAAAACTGAAATGAA  147
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAAATCCAGATCCTATTAATGCCGCAAAAAACAAAACTGAAATGAA  150

seq1  CAACTAAACAAACAAACAAAATGAATCTGAACAATTAGCCCTTTTTCTGA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTAAACAAACAAACAAAATGAATCTGAACAATTAGCCCTTTTTCTGA  200

seq1  AACACAAACACATCACTATAACCTTTCCTTTCTTACCTTCAAGATACTAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAAACACATCACTATAACCTTTCCTTTCTTACCTTCAAGATACTAA  250

seq1  AATTTAAAAGTCCAACAGTCTTTAAAATGTCAATACTTAAAAGCCCAACG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAAAGTCCAACAGTCTTTAAAATGTCAATACTTAAAAGCCCAACG  300

seq1  TTTCATTAAAATATTCAAGTATTCCTAAAAGTCCAGTGTCAATTAACCGT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTAAAATATTCAAGTATTCCTAAAAGTCCAGTGTCAATTAACCGT  350

seq1  GGGTTCTTGTGCAATAAAATAACAAACTTATGCTCTTACTCTAAGAGGTA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCTTGTGCAATAAAATAACAAACTTATGCTCTTACTCTAAGAGGTA  400

seq1  AGAACTATAGCACTGTTACCTTCAAATCAAAGCAAAACTGGCCTAATAGC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTATAGCACTGTTACCTTCAAATCAAAGCAAAACTGGCCTAATAGC  450

seq1  AGAAAGCTCACTGTCAGACATCTTGAACTCATGATCTTTACGGTTCCAAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCTCACTGTCAGACATCTTGAACTCATGATCTTTACGGTTCCAAA  500

seq1  TAGTGCATTGTACAACCCTACTTCTCCATAAACCTCAGCTTTTCAAGAAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCATTGTACAACCCTACTTCTCCATAAACCTCAGCTTTTCAAGAAA  550

seq1  ATAAGAAATAAAATAAAATTTGTATGCAATGCAAATTTCTCTTTGTAGTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAAATAAAATAAAATTTGTATGCAATGCAAATTTCTCTTTGTAGTA  600

seq1  TACAATTATTATCTTCTTCAAAATATATTAATATGTTAAAAAATTTAAAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATTATTATCTTCTTCAAAATATATTAATATGTTAAAAAATTTAAAA  650

seq1  TACATTTTTAAAGATGTTTCCCTAAAAAAAATTAAACTCAATTTCTTTAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTTTAAAGATGTTTCCCTAAAAAAAATTAAACTCAATTTCTTTAG  700

seq1  GATTAAGAATATAACCAGGCAGCACACACTAGCTGGTCAGAGCTCTCTGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAGAATATAACCAGGCAGCACACACTAGCTGGTCAGAGCTCTCTGA  750

seq1  CACACACAAGCAGAGGACTGTCTGACTTGGCCTCAGTGAAAGAAGACACA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACAAGCAGAGGACTGTCTGACTTGGCCTCAGTGAAAGAAGACACA  800

seq1  CCTAACCCTTGAGAGACTTGAGGCTCCACAAGGTGGGAATTC  839
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACCCTTGAGAGACTTGAGGCTCCACAAGGTGGGAATTC  842