BAC Information

Click to search

BAC

Clone NameB6Ng01-213I13
Chromosome5 (Build37)13 (Build37)
Map Location 54,414,162 - 54,415,2527,498,311 - 7,498,419
singlet/doubletsingletsinglet
Overlap geneStim2
Upstream geneSlc34a2, 2310045A20Rik, 1810013D10Rik, LOC100041198, LOC100041911, Rbpj, Cckar, Tbc1d19
Downstream geneEG666377, LOC666380
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-213I13.bB6Ng01-213I13.g
ACCGA031029GA031030
length1,084506
definitionB6Ng01-213I13.b B6Ng01-213I13.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(54,414,162 - 54,415,252)(7,498,311 - 7,498,419)
sequence
gaattcttgagtaacactgagagacagtcaagactggttcttctctgaca
tttctgttagttcactggctactgtaacaatgagtgctcattaaaagagt
taagagccttcttcttccctcccttcccctctccttcctattgtatgctt
agtaggcactctactactttagcaacatcctcagccctgcccttgaattt
cttaacaacttggatttctgaaagttacctgttccttaccacaatgtaac
catgtcatccctactttcttttgtcagttcttctatatggcccctctttt
ttgcaagttagttcattttaaatactttgtatattttttctgtcattaat
agtttcatggctttaacctttatttctcttttaccataggacctagtgct
catgtgggaaaggttgagagggaaatagagaaaggaataatggaaaatat
tcatctttaatgtaacataaccatccatccatccatccattgattttaag
tattgaggattgaacttagggttaagtactacctctgagccacacgttca
gcttatagctctgcatttcagttatgtatcaactccttacttaagggctc
cagtgtttcagtttttccttggtggaacataattcctaccacagtatgta
cacacacacacacacacatacgcacacatacgcacacacgtctgtactgc
ctataatttggtgtgcaacgttttgccccctctctggatatgagattgtt
tcaatgcttaggaagactgttacgaaggagtgcagtgaactggtatatcc
taggacattgtctgaggtactgagagtatacaataagttatgtggtatgt
agcaaagctttgtaatagattcatattctgtaacaaagctacagttggaa
gtagaattgtacagtggaaatataatatgaaaagactgacagatttaaaa
tggacgtttccttctacatttatttatttgaagagatagtgtatattaca
tcatttttgctactcgtagacagggaaagcatgtaaaggtcttggaatat
acttcttgggttctagtggctcaaataatcttca

aaagcgatcaactaaacatgacaggacatttcaagacagcaagacgctca
ggacagcattgctgtttactgctgtcaactagacttacaatgaagtgtga
gaccaaaaagcagaacagaaagatttgaaggctatactttcacaaaacag
gggatgcaagcatgatttaaattaccacctgtggtggtttgtagaagaac
acctccccaccccatgtaggctttgaatagttgaagttcagtgaccaggg
agagaactctttgataggattaggaagtgtagctttgttggaggaaaatc
cctacacccagtgccaaggaccagcttggagaggggttcttgagggaagg
ggtgtttgggagtagtgaaaagaagtcaaatcatgggtccaagctggtga
cctaggttctattgagatggttttccagactctctctgtctctctgtctc
tctgtctctgtttctctctctctctctctctctctctctctctctctctc
tctgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_54414162_54415252
seq2: B6Ng01-213I13.b_45_1128

seq1  GAATTCTTGAGTAACACTGAGAGACAGTCAAGACTGGTTCTTCTCTGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGAGTAACACTGAGAGACAGTCAAGACTGGTTCTTCTCTGACA  50

seq1  TTTCTGTTAGTTCACTGGCTACTGTAACAATGAGTGCTCATTAAAAGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTTAGTTCACTGGCTACTGTAACAATGAGTGCTCATTAAAAGAGT  100

seq1  TAAGAGCCTTCTTCTTCCCTCCCTTCCCCTCTCCTTCCTATTGTATGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGCCTTCTTCTTCCCTCCCTTCCCCTCTCCTTCCTATTGTATGCTT  150

seq1  AGTAGGCACTCTACTACTTTAGCAACATCCTCAGCCCTGCCCTTGAATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGCACTCTACTACTTTAGCAACATCCTCAGCCCTGCCCTTGAATTT  200

seq1  CTTAACAACTTGGATTTCTGAAAGTTACCTGTTCCTTACCACAATGTAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACAACTTGGATTTCTGAAAGTTACCTGTTCCTTACCACAATGTAAC  250

seq1  CATGTCATCCCTACTTTCTTTTGTCAGTTCTTCTATATGGCCCCTCTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCATCCCTACTTTCTTTTGTCAGTTCTTCTATATGGCCCCTCTTTT  300

seq1  TTGCAAGTTAGTTCATTTTAAATACTTTGTATATTTTTTCTGTCATTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAGTTAGTTCATTTTAAATACTTTGTATATTTTTTCTGTCATTAAT  350

seq1  AGTTTCATGGCTTTAACCTTTATTTCTCTTTTACCATAGGACCTAGTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCATGGCTTTAACCTTTATTTCTCTTTTACCATAGGACCTAGTGCT  400

seq1  CATGTGGGAAAGGTTGAGAGGGAAATAGAGAAAGGAATAATGGAAAATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGGGAAAGGTTGAGAGGGAAATAGAGAAAGGAATAATGGAAAATAT  450

seq1  TCATCTTTAATGTAACATAACCATCCATCCATCCATCCATTGATTTTAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTTTAATGTAACATAACCATCCATCCATCCATCCATTGATTTTAAG  500

seq1  TATTGAGGATTGAACTTAGGGTTAAGTACTACCTCTGAGCCACACGTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAGGATTGAACTTAGGGTTAAGTACTACCTCTGAGCCACACGTTCA  550

seq1  GCTTATAGCTCTGCATTTCAGTTATGTATCAACTCCTTACTTAAGGGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATAGCTCTGCATTTCAGTTATGTATCAACTCCTTACTTAAGGGCTC  600

seq1  CAGTGTTTCAGTTTTTCCTTGGTGGAACATAATTCCTACCACAGTATGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTTTCAGTTTTTCCTTGGTGGAACATAATTCCTACCACAGTATGTA  650

seq1  CACACACACACACACACATACGCACACATACGCACACACGTCTGTACTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACATACGCACACATACGCACACACGTCTGTACTGC  700

seq1  CTATAATTTGGTGTGCAACGTTTTGCCCCCTCTCTGGATATGAGATTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAATTTGGTGTGCAACGTTTTGCCCCCTCTCTGGATATGAGATTGTT  750

seq1  TCAATGCTTAGGAAGACTGTTACGAAGGAGTGCAGTGAACTGGTATATCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGCTTAGGAAGACTGTTACGAAGGAGTGCAGTGAACTGGTATATCC  800

seq1  TAGGACATTGTCTGAGGTACTGAGAGTATACAATAAGTTATGTGGTATGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACATTGTCTGAGGTACTGAGAGTATACAATAAGTTATGTGGTATGT  850

seq1  AGCAAAGCTTTGTAATAGATTCATATTCTGTAACAAAGCTACAGTTGGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGCTTTGTAATAGATTCATATTCTGTAACAAAGCTACAGTTGGAA  900

seq1  GTAGAATTGTACAGTGGAAATATAATATGAAAAAGACTGACAGATTTAAA  950
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GTAGAATTGTACAGTGGAAATATAATATG-AAAAGACTGACAGATTTAAA  949

seq1  ATGGACGTTTCCTTCTACATTTATTTATTTGAAGGAGATAGTGTTATATT  1000
      ||||||||||||||||||||||||||||||||| ||||||||| ||||||
seq2  ATGGACGTTTCCTTCTACATTTATTTATTTGAA-GAGATAGTG-TATATT  997

seq1  ACATCA-TTTTGCTTAACTCGTAGACAGGGGAAAGCATGTAAAGGTCTTG  1049
      |||||| |||||||  ||||||||||| ||||||||||||||||||||||
seq2  ACATCATTTTTGCT--ACTCGTAGACA-GGGAAAGCATGTAAAGGTCTTG  1044

seq1  GAATATACTTCTGGGTTCCTAAGTGGCTCACATAAATCTTCA  1091
      |||||||||||| || | || ||||||||| || ||||||||
seq2  GAATATACTTCTTGGGTTCT-AGTGGCTCAAAT-AATCTTCA  1084


seq1: chr13_7498311_7498419
seq2: B6Ng01-213I13.g_503_579 (reverse)

seq1  CACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAAGA  50
      |||||||||||||||||||||||||||||||||||||||||         
seq2  CACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG---------  41

seq1  GAGACAGCGAGAGACAGAAACAGAGAGAAAGAGACAGAGAGACAGAGAGA  100
                     ||||||        |||||||||||||||||||||
seq2  ---------------AGAAAC--------AGAGACAGAGAGACAGAGAGA  68

seq1  CAGAGAGAG  109
      |||||||||
seq2  CAGAGAGAG  77


| Home | SequenceCutter | Blast | Download |