BAC Information

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BAC

Clone NameB6Ng01-214C04
Chromosome5 (Build37)
Map Location 99,270,717 - 99,427,713
singlet/doubletdoublet
Overlap geneBmp3, Prkg2
Upstream geneAntxr2, EG435856, LOC666315, LOC666320, LOC666326, Prdm8, Fgf5, 1700007G11Rik
Downstream geneLOC100041680, Rasgef1b, A930011G23Rik, LOC100040738, LOC666364, LOC100040763, LOC100040774, Hnrpd, 4930524J08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-214C04.bB6Ng01-214C04.g
ACCGA031468GA031469
length1,199290
definitionB6Ng01-214C04.b B6Ng01-214C04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,426,512 - 99,427,713)(99,270,717 - 99,271,006)
sequence
gaattcttcaggtggctctgaggacagagaagactctttaaggaggaagg
ggttcccaccaaggagctcgtctgcttcctttccatggattaatgatttg
atgaggtcacgagggaagttactcattttaggaagtctttagcctgtttt
tgaggactatttgtctaggaaaaggctactcatttcctaatagaaataaa
ctactgttgaaaggcatttgaatgaacgttgcaggggaataaaaggccat
taaaaatcacagacagcaaatggagtatgtaaaaattcccacagctcatg
aagcagcttttcctccagctcaatagtttgtaacatcgaagagagtatgt
taattagaacatttgaaacatatggcaattgagtaactattttgagctgc
ctccttttgctaacagaaggcagaggattctagaaccgtcaataagcaag
actttaatttgagcagtgaaaagtgtgttgcattggaaacaaagtttttg
tccagtctactcatgcctagaaaaacatcttcggacaaaccctgacttcc
accacccttcccaagccatgtcaatcaaacctaaggggccagctttcctc
ctcgaaaggcaatgagatagggcaatgagatagagcggaagtatcataga
tggcagatttacagactcagatataaagtctaggaagagtaaatttcttc
cttccttttattctccttcttcgtaaacatgggaatagtagctatcttaa
agaatatagaactaaataggatataaaagaacactgtcactgatactgtg
tgtgcataagcacatcaatggagggatgaatacatgcatcaatgaaggga
tttgtaatgtcacaaataggatttctttctgcttcccagatctgcttcca
tctgacaattgaatgggcctgggaattttcctctaagagatgggattaca
aatgataattaaattgggtatcatgactaccagaaaatattcagatattt
tttaagagtttgacacatatatattggtgagttttagtgaaaccaaggaa
aaaatttgtcttgaaagaattataagcatataggatctgaagatgtccta
tcaattcatggaacgagttgaatctttctgcttcgtttagccagttaacg
ggcaattcctttctgtaatgtacaacaggtgagaaaaagctcattacag
ttctgatgatctcagatatgagataattacaagttaaataatattaactt
tgcactgcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtgtgggtgtgacacagaggacctgctcgccccttagggagggtctgta
aattggaaataagtactttctccattaaataagagatacttgattaaatt
aagatcatatttagattacaaaaaatccaatgctcaaatctgacctctaa
tcttgttctctcatgcaaaaaatggctagtatatattata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_99426512_99427713
seq2: B6Ng01-214C04.b_49_1247 (reverse)

seq1  CTGTGATGAGCTTTTTCTCA-CTGTTGTACAATAACAGAAAAGGAATGGC  49
      |||| ||||||||||||||| ||||||||| || ||||||| | | || |
seq2  CTGTAATGAGCTTTTTCTCACCTGTTGTAC-ATTACAGAAAGGAATTGCC  49

seq1  CGTT-ACT-GCTAAAGGAAAGCAGGAAAGATTCACTTCGTTCCATGATTT  97
      |||| ||| |||||| | ||||| ||||||||||  ||||||||||| ||
seq2  CGTTAACTGGCTAAACG-AAGCA-GAAAGATTCAACTCGTTCCATGAATT  97

seq1  GATAGGACTATCTTCAGAT-CTATATGCTTATATTCTTTTCAAGGACAAA  146
      |||||||| |||||||||| ||||||||||||| |  |||||| ||||||
seq2  GATAGGAC-ATCTTCAGATCCTATATGCTTATAATTCTTTCAA-GACAAA  145

seq1  TTTTTTTCTTGGTTTCACCTAAAACTTCACCAATATATTATGTGTCAAAC  196
      |||||| |||||||||| ||||||| ||||||||||| ||||||||||||
seq2  TTTTTTCCTTGGTTTCA-CTAAAAC-TCACCAATATA-TATGTGTCAAAC  192

seq1  TCTT-AAAAATATCTTGAATATTTTTCTGGTAGTCATGATA-CCAATTTA  244
      |||| ||||||||| |||||| ||||||||||||||||||| ||||||||
seq2  TCTTAAAAAATATC-TGAATA-TTTTCTGGTAGTCATGATACCCAATTTA  240

seq1  ATTATCATTTGTAATCCCATCTCTTAGAGGAAAATTCCCAGG-CCATTCA  293
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATTATCATTTGTAATCCCATCTCTTAGAGGAAAATTCCCAGGCCCATTCA  290

seq1  ATTGTCAGATGGAAGCAGATCTGGGAAGCAGAAAGAAATCCTATTTGTGA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCAGATGGAAGCAGATCTGGGAAGCAGAAAGAAATCCTATTTGTGA  340

seq1  CATTACAAATCCCTTCATTGATGCATGTATTCATCCCTCCATTGATGTGC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACAAATCCCTTCATTGATGCATGTATTCATCCCTCCATTGATGTGC  390

seq1  TTATGCACACACAGTATCAGTGACAGTGTTCTTTTATATCCTATTTAGTT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCACACACAGTATCAGTGACAGTGTTCTTTTATATCCTATTTAGTT  440

seq1  CTATATTCTTTAAGATAGCTACTATTCCCATGTTTACGAAGAAGGAGAAT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATTCTTTAAGATAGCTACTATTCCCATGTTTACGAAGAAGGAGAAT  490

seq1  AAAAGGAAGGAAGAAATTTACTCTTCCTAGACTTTATATCTGAGTCTGTA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAAGGAAGAAATTTACTCTTCCTAGACTTTATATCTGAGTCTGTA  540

seq1  AATCTGCCATCTATGATACTTCCGCTCTATCTCATTGCCCTATCTCATTG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGCCATCTATGATACTTCCGCTCTATCTCATTGCCCTATCTCATTG  590

seq1  CCTTTCGAGGAGGAAAGCTGGCCCCTTAGGTTTGATTGACATGGCTTGGG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCGAGGAGGAAAGCTGGCCCCTTAGGTTTGATTGACATGGCTTGGG  640

seq1  AAGGGTGGTGGAAGTCAGGGTTTGTCCGAAGATGTTTTTCTAGGCATGAG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTGGTGGAAGTCAGGGTTTGTCCGAAGATGTTTTTCTAGGCATGAG  690

seq1  TAGACTGGACAAAAACTTTGTTTCCAATGCAACACACTTTTCACTGCTCA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTGGACAAAAACTTTGTTTCCAATGCAACACACTTTTCACTGCTCA  740

seq1  AATTAAAGTCTTGCTTATTGACGGTTCTAGAATCCTCTGCCTTCTGTTAG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAGTCTTGCTTATTGACGGTTCTAGAATCCTCTGCCTTCTGTTAG  790

seq1  CAAAAGGAGGCAGCTCAAAATAGTTACTCAATTGCCATATGTTTCAAATG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGAGGCAGCTCAAAATAGTTACTCAATTGCCATATGTTTCAAATG  840

seq1  TTCTAATTAACATACTCTCTTCGATGTTACAAACTATTGAGCTGGAGGAA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAATTAACATACTCTCTTCGATGTTACAAACTATTGAGCTGGAGGAA  890

seq1  AAGCTGCTTCATGAGCTGTGGGAATTTTTACATACTCCATTTGCTGTCTG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGCTTCATGAGCTGTGGGAATTTTTACATACTCCATTTGCTGTCTG  940

seq1  TGATTTTTAATGGCCTTTTATTCCCCTGCAACGTTCATTCAAATGCCTTT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTTAATGGCCTTTTATTCCCCTGCAACGTTCATTCAAATGCCTTT  990

seq1  CAACAGTAGTTTATTTCTATTAGGAAATGAGTAGCCTTTTCCTAGACAAA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGTAGTTTATTTCTATTAGGAAATGAGTAGCCTTTTCCTAGACAAA  1040

seq1  TAGTCCTCAAAAACAGGCTAAAGACTTCCTAAAATGAGTAACTTCCCTCG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCTCAAAAACAGGCTAAAGACTTCCTAAAATGAGTAACTTCCCTCG  1090

seq1  TGACCTCATCAAATCATTAATCCATGGAAAGGAAGCAGACGAGCTCCTTG  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTCATCAAATCATTAATCCATGGAAAGGAAGCAGACGAGCTCCTTG  1140

seq1  GTGGGAACCCCTTCCTCCTTAAAGAGTCTTCTCTGTCCTCAGAGCCACCT  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAACCCCTTCCTCCTTAAAGAGTCTTCTCTGTCCTCAGAGCCACCT  1190

seq1  GAAGAATTC  1202
      |||||||||
seq2  GAAGAATTC  1199

seq1: chr5_99270717_99271006
seq2: B6Ng01-214C04.g_71_360

seq1  TTCTGATGATCTCAGATATGAGATAATTACAAGTTAAATAATATTAACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATGATCTCAGATATGAGATAATTACAAGTTAAATAATATTAACTT  50

seq1  TGCACTGCAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTGCAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  100

seq1  TGTGTGTGTTTTACACAGAGGACCTGCTCGCCCCTTAGGGAGGGTCAGTA  150
      |||||| || | |||||||||||||||||||||||||||||||||| |||
seq2  TGTGTGGGTGTGACACAGAGGACCTGCTCGCCCCTTAGGGAGGGTCTGTA  150

seq1  AATTGGAAATAAGTACTCTCTCCATTAAATAAGAGATACTTGATTAAATT  200
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AATTGGAAATAAGTACTTTCTCCATTAAATAAGAGATACTTGATTAAATT  200

seq1  AAGATCATATTTAGATTAGAAGAAATCCAAGGCTCAGATCTGACATCTAA  250
      |||||||||||||||||| || |||||||| ||||| ||||||| |||||
seq2  AAGATCATATTTAGATTACAAAAAATCCAATGCTCAAATCTGACCTCTAA  250

seq1  GCTTGTTCTCTCATGCAAAACATGTCATGTATATATTAAA  290
       ||||||||||||||||||| ||| |  |||||||||| |
seq2  TCTTGTTCTCTCATGCAAAAAATGGCTAGTATATATTATA  290