BAC Information

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BAC

Clone NameB6Ng01-214G06
Chromosome5 (Build37)
Map Location 6,022,307 - 6,171,030
singlet/doubletdoublet
Overlap genenone
Upstream genePftk1, 1700015F17Rik, Cldn12, Gtpbp10, LOC667699, EG667705, A330021E22Rik, Steap2, Steap1, LOC727711, LOC546854
Downstream geneLOC100041208, EG435830
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-214G06.bB6Ng01-214G06.g
ACCGA031651GA031652
length1,126663
definitionB6Ng01-214G06.b B6Ng01-214G06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,022,307 - 6,023,459)(6,170,368 - 6,171,030)
sequence
gaattccattctgatggatttagtgttagcaacctcactgatttccctgg
ttctccagttggctaaccatagaacttgtcatttctcaggtcacacaacc
atatggctcagtttcctatgattagtgtcttctccatatgcatcccagca
actttctatatgtgcacagcaaaaggtagcaccatatggtttaagttcct
ttacatcttggcagaccagaaagcaagaaggtcagatgaagaccaggctg
gtccacaatcctcatggcatcttccccaatgaatcacttcttctagctag
gcatcatctcctacagctcatctattttacctacctacctacctacccac
ctacctacccactactctgtgtttctattgggtttgattcactaaagaac
cttaacttacacagatgtataaataaatataaagtattagaaatatcata
ttttgggccagggctaaagctcaacttagagaattcatgctttatgtgac
cctaggactaatatcttgcatcatataaattgggcatatacattgaaaca
tacttttaattccagcactggagagatcgactcagaaggatcagaaattc
aagatttggcttgagagtagtaagcacttgacactcttgtagaggactta
ggttcagttcaaagcacccacatggtagtccacaaccatctgtaactcca
gttccagggtacccaacacctttttctgacctttactggcacaaggtata
cacattgtacagataactacatggagacaaaacacccatagacataaagt
aaataaatctaaagaatcatatggaaatacaaggtcatcctcagctacat
agcacattgaggctaagatggagcaagtgaggccttgtttcaactaaaga
aaagagaaagatttcaaaggaagaaaagaaagtagaaaatggaaaagatt
gcattttagttagtgatattatacactaattagaagaggagcaagaagaa
gtgtacacccagatttggttttatcgtgtttacatgtactattatcatga
aatgggtaagaatgtgcataagcacatatttgaaaatttacagatcaact
aagtacttacgttttttttttatttt

gaattcttgtaggagcactcctgctattatttctgtcatatagtttctaa
gtatgcatatagaaatgaattagcactgggtagtggtggcacaggccttt
aatcccaccacttgggaggcagaggcaggcagagtgggttccaggacagc
taaggctacacagaaaaaaccctgtctcaaaaatccaaaaaaaagaaaaa
ggggaaaaaaagaaaaagaagaagaaagagagaaaaaaggaaggaaggaa
ggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaga
tgaatcagctcctattttcctctaaaatcgaaatggacataaaaatccac
ttacattcatggatctagtaccttacctctgcatgattgtcactattgtt
ttttttccatctttatcaatatttttattctgtatctctgtctctataaa
cactgtggcagttttggtgaggtaaaatatttggccataatataaagata
caagacataaatatagagccattttgtttccttactatttccaaaagaaa
gagaagtatatgcatacatagatgatagacatacaagacaagatagaaag
gtagatcatagatagatagatagatagatagatagatagatagatagata
gatgatagatggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_6022307_6023459
seq2: B6Ng01-214G06.b_48_1173

seq1  GAATTCCATTCTGATGGATTTAGTGTTAGCAACCTCACTGATTTCCCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTCTGATGGATTTAGTGTTAGCAACCTCACTGATTTCCCTGG  50

seq1  TTCTCCAGTTGGCTAACCATAGAACTTGTCATTTCTCAGGTCACACAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCAGTTGGCTAACCATAGAACTTGTCATTTCTCAGGTCACACAACC  100

seq1  ATATGGCTCAGTTTCCTATGATTAGTGTCTTCTCCATATGCATCCCAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGCTCAGTTTCCTATGATTAGTGTCTTCTCCATATGCATCCCAGCA  150

seq1  ACTTTCTATATGTGCACAGCAAAAGGTAGCACCATATGGTTTAAGTTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTATATGTGCACAGCAAAAGGTAGCACCATATGGTTTAAGTTCCT  200

seq1  TTACATCTTGGCAGACCAGAAAGCAAGAAGGTCAGATGAAGACCAGGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATCTTGGCAGACCAGAAAGCAAGAAGGTCAGATGAAGACCAGGCTG  250

seq1  GTCCACAATCCTCATGGCATCTTCCCCAATGAATCACTTCTTCTAGCTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACAATCCTCATGGCATCTTCCCCAATGAATCACTTCTTCTAGCTAG  300

seq1  GCATCATCTCCTACAGCTCATCTATTTTACCTACCTACCTACCTACCCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCATCTCCTACAGCTCATCTATTTTACCTACCTACCTACCTACCCAC  350

seq1  CTACCTACCCACTACTCTGTGTTTCTATTGGGTTTGATTCACTAAAGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTACCCACTACTCTGTGTTTCTATTGGGTTTGATTCACTAAAGAAC  400

seq1  CTTAACTTACACAGATGTATAAATAAATATAAAGTATTAGAAATATCATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACTTACACAGATGTATAAATAAATATAAAGTATTAGAAATATCATA  450

seq1  TTTTGGGCCAGGGCTAAAGCTCAACTTAGAGAATTCATGCTTTATGTGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGGCCAGGGCTAAAGCTCAACTTAGAGAATTCATGCTTTATGTGAC  500

seq1  CCTAGGACTAATATCTTGCATCATATAAATTGGGCATATACATTGAAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGACTAATATCTTGCATCATATAAATTGGGCATATACATTGAAACA  550

seq1  TACTTTTAATTCCAGCACTGGAGAGATCGACTCAGAAGGATCAGAAATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTAATTCCAGCACTGGAGAGATCGACTCAGAAGGATCAGAAATTC  600

seq1  AAGATTTGGCTTGAGAGTAGTAAGCACTTGACACTCTTGTAGAGGACTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTGGCTTGAGAGTAGTAAGCACTTGACACTCTTGTAGAGGACTTA  650

seq1  GGTTCAGTTCAAAGCACCCACATGGTAGTCCACAACCATCTGTAACTCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCAGTTCAAAGCACCCACATGGTAGTCCACAACCATCTGTAACTCCA  700

seq1  GTTCCAGGGTACCCAACACCTTTTTCTGACCTTTACTGGCACAAGGTATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAGGGTACCCAACACCTTTTTCTGACCTTTACTGGCACAAGGTATA  750

seq1  CACATTGTACAGATAACTACATGGAGACAAAACACCCATAGACATAAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTGTACAGATAACTACATGGAGACAAAACACCCATAGACATAAAGT  800

seq1  AAATAAATCTAAAGAATCATATGGAAATACAAGGTCATCCTCAGCTACAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATCTAAAGAATCATATGGAAATACAAGGTCATCCTCAGCTACAT  850

seq1  AGCACATTGAGGCTAAGATGGAGCAAGTGAGGCCTTGTTTCAACTAAAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACATTGAGGCTAAGATGGAGCAAGTGAGGCCTTGTTTCAACTAAAGA  900

seq1  AAAGAGAAAGATTTCAAAGGAAGAAAAGAAAGTAGAAAAATGGAAAAGAT  950
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AAAGAGAAAGATTTCAAAGGAAGAAAAGAAAGTAG-AAAATGGAAAAGAT  949

seq1  TGCATTTTAGTTAGTGAATATATACACTAATTAGAAGAAGGAGCAAGAAG  1000
      |||||||||||||||||   ||||||||||||||||| ||||||||||||
seq2  TGCATTTTAGTTAGTGATATTATACACTAATTAGAAG-AGGAGCAAGAAG  998

seq1  AAAGTGTAACACCCAGATTTGGTTTTTATTCGTTGTTTACATGTAACTAA  1050
       |||||| ||||||||||||||||||   ||| ||||||||||| ||| |
seq2  -AAGTGT-ACACCCAGATTTGGTTTT--ATCG-TGTTTACATGT-ACT-A  1041

seq1  TTATTCCATGATATTGTGTAAGAATGTGCAATTAAAGCAACAATTAATTT  1100
      ||||  ||||| | || |||||||||||||    |||| |||  ||  ||
seq2  TTAT--CATGA-AATGGGTAAGAATGTGCA---TAAGC-ACA--TA--TT  1080

seq1  AAAAAAATTACAAAGATACAAACTATAGTACCTACATTTTTTTTTTTTAT  1150
        |||| ||||  ||||   ||||| ||||| |||   ||||||||||||
seq2  TGAAAATTTAC--AGAT--CAACTA-AGTACTTAC--GTTTTTTTTTTAT  1123

seq1  TTT  1153
      |||
seq2  TTT  1126


seq1: chr5_6170368_6171030
seq2: B6Ng01-214G06.g_64_726 (reverse)

seq1  ACCATCTATCATCTATCTATCTATCTATCTATCTATCTATCTATCTATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTATCATCTATCTATCTATCTATCTATCTATCTATCTATCTATCT  50

seq1  ATCTATGATCTACCTTTCTATCTTGTCTTGTATGTCTATCATCTATGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATGATCTACCTTTCTATCTTGTCTTGTATGTCTATCATCTATGTAT  100

seq1  GCATATACTTCTCTTTCTTTTGGAAATAGTAAGGAAACAAAATGGCTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATACTTCTCTTTCTTTTGGAAATAGTAAGGAAACAAAATGGCTCTA  150

seq1  TATTTATGTCTTGTATCTTTATATTATGGCCAAATATTTTACCTCACCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATGTCTTGTATCTTTATATTATGGCCAAATATTTTACCTCACCAA  200

seq1  AACTGCCACAGTGTTTATAGAGACAGAGATACAGAATAAAAATATTGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCCACAGTGTTTATAGAGACAGAGATACAGAATAAAAATATTGATA  250

seq1  AAGATGGAAAAAAAACAATAGTGACAATCATGCAGAGGTAAGGTACTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGGAAAAAAAACAATAGTGACAATCATGCAGAGGTAAGGTACTAGA  300

seq1  TCCATGAATGTAAGTGGATTTTTATGTCCATTTCGATTTTAGAGGAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGAATGTAAGTGGATTTTTATGTCCATTTCGATTTTAGAGGAAAAT  350

seq1  AGGAGCTGATTCATCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCTGATTCATCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTC  400

seq1  CTTCCTTCCTTCCTTCCTTCCTTCCTTTTTTCTCTCTTTCTTCTTCTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTCCTTCCTTCCTTCCTTCCTTTTTTCTCTCTTTCTTCTTCTTTT  450

seq1  TCTTTTTTTCCCCTTTTTCTTTTTTTTGGATTTTTGAGACAGGGTTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTTCCCCTTTTTCTTTTTTTTGGATTTTTGAGACAGGGTTTTTT  500

seq1  CTGTGTAGCCTTAGCTGTCCTGGAACCCACTCTGCCTGCCTCTGCCTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTAGCCTTAGCTGTCCTGGAACCCACTCTGCCTGCCTCTGCCTCCC  550

seq1  AAGTGGTGGGATTAAAGGCCTGTGCCACCACTACCCAGTGCTAATTCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGTGGGATTAAAGGCCTGTGCCACCACTACCCAGTGCTAATTCATT  600

seq1  TCTATATGCATACTTAGAAACTATATGACAGAAATAATAGCAGGAGTGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATATGCATACTTAGAAACTATATGACAGAAATAATAGCAGGAGTGCT  650

seq1  CCTACAAGAATTC  663
      |||||||||||||
seq2  CCTACAAGAATTC  663


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