BAC Information

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BAC

Clone NameB6Ng01-214I14
Chromosome5 (Build37)4 (Build37)
Map Location 109,907,883 - 109,909,04724,708,031 - 24,708,500
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePcgf3, LOC100042557, Cplx1, LOC100042571, Gak, Tmem175, Dgkq, Idua, Slc26a1, LOC100042616, Fgfrl1, LOC671564, 1810008K16Rik, EG627479, EG435864, EG667087, LOC100041615, V2r16, LOC545792, EG384219, Vmn2r12, LOC231589, EG231591, LOC667128, EG211223, EG384220, EG636052, EG384221
Downstream geneLOC667159, LOC667171, Tpte2, EG667185, LOC671695, LOC636173, LOC624831, LOC100041734, LOC100042749, LOC667198, 4930522L14Rik, LOC667243, Plcxd1, Gtpbp6, LOC675812, Chfr, Golga3, D5Ertd585e, Pgam5, Pxmp2, Pole, P2rx2, Gm1679, 2410025L10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-214I14.bB6Ng01-214I14.g
ACCGA031759GA031760
length1,174719
definitionB6Ng01-214I14.b B6Ng01-214I14.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(109,907,883 - 109,909,047)(24,708,031 - 24,708,500)
sequence
gaattcaaactgaggcagggtttccaaggactgttatctgtgttatagct
aatttttgaggacagctaatcttgctttgccagctatgacctcttagtcc
tctcagatggggaaggagctgggtggtattgaactattgaacttgcttac
attggcagggaaagggaaaattcttcaagcagctgggggaagggaaaagc
ttctgcaaacagctttggtgcacattagccaagctaaagactgtatttct
tcagtttctcttcagtatgtgctcttttctacatttggagataactgtga
agggtaaatgctttacagcactgttttcattcatagggcttctatccagt
gtgatttctttcgtgtgtgtgtgtgtgtgcgcgggcgcgtgtgcgcgcgt
gccgcttgtctgaattaggattttattgctgtgaaaaaaataccatgacc
aaggcaactcttataaaagacaacatttaatggagatgccttacagattc
aaaggttcagtccattatcatcatggagggaagcatggcagtgtacagtg
ccggaagagcccaaaagcccacccccacagtgaaacaattcctcaaacaa
gaacatatcttttaatagtgccactttcccatgggccaagcatattcaaa
ccaccatctttgaagatcactgtgactttcaaaggctttaccatattggc
tacatacatatggtttctctctaataagttcttttatgtgttcagagatt
atttggttgtgaaaagaccttacctcagtgataacattcattgggtttct
ttccagtatatactcatctatgaattctgagactactgtgatctgaaata
tggctttaccatattgattacattcacagggttttccctccagtatgtgt
ttcttttgtcttttgcagataatcatgaaacacaaagggcttttacactg
attacattttgtaaaggttactctttctgtattgcattattttccttgcc
tttgaagttgtacatgaaaaggaaaaggattttatcacattccattaatt
ttcaaaggtttttctcagtataactttctttttatgtatttggagattac
ttggtttgaaaggcccaattgattaacactcataggttctctcgagtgat
tcttattggttttgaagattacta
gaattccatagtgttctttctgtttctattttataaagtagcttgaggaa
tgtttgtattagcactcctttgagggcctagtagaattctgcaccaaggc
catctggtatggtattgtttttggttgggaggtttttattgagagattct
atttccttagatgtaatgtaactgactagattgtttatctgctctcgatt
tatctttggtacatggtatctgtctagataaccactcatttatctagatt
ttccagttatgttgaataaaggcttttgcagtaagatccgatgatttttt
aatttcctcagtttctggtcttatgtctcccttttcatttctgattttgt
taatttggacactctgtgtcctttagttagtttacctaatggtttatcta
ccttattgattttctcaaagaaccagcttttggttttgttaattgtgttt
ttacttctctctgattctaattggttgattactaccctgagtttgatttt
ttttcctgtcttgtcctcttgtgtctgtttgctttttttgttctagggct
tttaggtgtactgttaagatactagtataggttctctccaaattctttta
tgagggcacttagtgctatgaatttttctcttagcactgctttcattttt
ttcccatacttttgggtatgttgtatcttctagaatagtcttttaatctc
tttatttcttccctgaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_109907883_109909047
seq2: B6Ng01-214I14.b_50_1223 (reverse)

seq1  TAGTAATCTTCAAAACCATAAAGAATTCACTCTGGAGAGAAACCCTATGA  50
      ||||||||||||||||||  ||||| ||||||  |||||||  |||||||
seq2  TAGTAATCTTCAAAACCAATAAGAA-TCACTC--GAGAGAA--CCTATGA  45

seq1  GTG-TAATCAATGTGGCCTTTTCACAACCAAGTAATCTCCAAATACAT-A  98
      ||| |||||||| ||| | ||||| ||||||||||||||||||||||| |
seq2  GTGTTAATCAAT-TGGGCCTTTCA-AACCAAGTAATCTCCAAATACATAA  93

seq1  AAAGAAAG-TATACTGGAGAAAAACCTTTGAAAATTAAT-GAATGTGAT-  145
      |||||||| |||||| ||||||||||||||||||||||| ||||||||| 
seq2  AAAGAAAGTTATACT-GAGAAAAACCTTTGAAAATTAATGGAATGTGATA  142

seq1  AAATCCTTTTCC-TTTCATGTACAACTTCAAAGGCA--GGAAATAATGC-  191
      |||||||||||| |||||||||||||||||||||||  | ||||||||| 
seq2  AAATCCTTTTCCTTTTCATGTACAACTTCAAAGGCAAGGAAAATAATGCA  192

seq1  ATACAG-AAGAGTAACC-TTAC-AAATGTAATCAGTGTAAA--GCCTTTG  236
      |||||| |||||||||| |||| ||||||||||||||||||   ||||||
seq2  ATACAGAAAGAGTAACCTTTACAAAATGTAATCAGTGTAAAAGCCCTTTG  242

seq1  TGTTTCATGATTATCTGC-AAAGACAAA--GAACACATACTGGAGGGAAA  283
      |||||||||||||||||| |||||||||   |||||||||||||||||||
seq2  TGTTTCATGATTATCTGCAAAAGACAAAAGAAACACATACTGGAGGGAAA  292

seq1  ACCCTGTGAATGTAATCAATATGGTAAAGCCATATTTCAGATCACAGTAG  333
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTGAATGTAATCAATATGGTAAAGCCATATTTCAGATCACAGTAG  342

seq1  TCTCAGAATTCATAGATGAGTATATACTGGAAAGAAACCCAATGAATGTT  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGAATTCATAGATGAGTATATACTGGAAAGAAACCCAATGAATGTT  392

seq1  ATCACTGAGGTAAGGTCTTTTCACAACCAAATAATCTCTGAACACATAAA  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTGAGGTAAGGTCTTTTCACAACCAAATAATCTCTGAACACATAAA  442

seq1  AGAACTTATTAGAGAGAAACCATATGTATGTAGCCAATATGGTAAAGCCT  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTATTAGAGAGAAACCATATGTATGTAGCCAATATGGTAAAGCCT  492

seq1  TTGAAAGTCACAGTGATCTTCAAAGATGGTGGTTTGAATATGCTTGGCCC  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGTCACAGTGATCTTCAAAGATGGTGGTTTGAATATGCTTGGCCC  542

seq1  ATGGGAAAGTGGCACTATTAAAAGATATGTTCTTGTTTGAGGAATTGTTT  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAAAGTGGCACTATTAAAAGATATGTTCTTGTTTGAGGAATTGTTT  592

seq1  CACTGTGGGGGTGGGCTTTTGGGCTCTTCCGGCACTGTACACTGCCATGC  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGGGGGTGGGCTTTTGGGCTCTTCCGGCACTGTACACTGCCATGC  642

seq1  TTCCCTCCATGATGATAATGGACTGAACCTTTGAATCTGTAAGGCATCTC  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCCATGATGATAATGGACTGAACCTTTGAATCTGTAAGGCATCTC  692

seq1  CATTAAATGTTGTCTTTTATAAGAGTTGCCTTGGTCATGGTATTTTTTTC  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAATGTTGTCTTTTATAAGAGTTGCCTTGGTCATGGTATTTTTTTC  742

seq1  ACAGCAATAAAATCCTAATTCAGACAAGCGGCACGCGCGCACACGCGCCC  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAATAAAATCCTAATTCAGACAAGCGGCACGCGCGCACACGCGCCC  792

seq1  GCGCACACACACACACACACGAAAGAAATCACACTGGATAGAAGCCCTAT  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCACACACACACACACACGAAAGAAATCACACTGGATAGAAGCCCTAT  842

seq1  GAATGAAAACAGTGCTGTAAAGCATTTACCCTTCACAGTTATCTCCAAAT  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAAAACAGTGCTGTAAAGCATTTACCCTTCACAGTTATCTCCAAAT  892

seq1  GTAGAAAAGAGCACATACTGAAGAGAAACTGAAGAAATACAGTCTTTAGC  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAAAGAGCACATACTGAAGAGAAACTGAAGAAATACAGTCTTTAGC  942

seq1  TTGGCTAATGTGCACCAAAGCTGTTTGCAGAAGCTTTTCCCTTCCCCCAG  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTAATGTGCACCAAAGCTGTTTGCAGAAGCTTTTCCCTTCCCCCAG  992

seq1  CTGCTTGAAGAATTTTCCCTTTCCCTGCCAATGTAAGCAAGTTCAATAGT  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTGAAGAATTTTCCCTTTCCCTGCCAATGTAAGCAAGTTCAATAGT  1042

seq1  TCAATACCACCCAGCTCCTTCCCCATCTGAGAGGACTAAGAGGTCATAGC  1083
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATACCACCCAGCTCCTTCCCCATCTGAGAGGACTAAGAGGTCATAGC  1092

seq1  TGGCAAAGCAAGATTAGCTGTCCTCAAAAATTAGCTATAACACAGATAAC  1133
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAAGCAAGATTAGCTGTCCTCAAAAATTAGCTATAACACAGATAAC  1142

seq1  AGTCCTTGGAAACCCTGCCTCAGTTTGAATTC  1165
      ||||||||||||||||||||||||||||||||
seq2  AGTCCTTGGAAACCCTGCCTCAGTTTGAATTC  1174

seq1: chr4_24708031_24708500
seq2: B6Ng01-214I14.g_392_779 (reverse)

seq1  CAGGGAAGAAATAAAGACA-GAAGGCACCCAGCTTGGGAGCTGAAAGCAA  49
      ||||||||||||||||| |  ||   ||    ||    ||  || | |||
seq2  CAGGGAAGAAATAAAGAGATTAAAAGACTATTCT----AGAAGATA-CAA  45

seq1  CACAACTGTCAATGCTATATGTTTCTTATCCTTAGTATAATAAGCTTATC  99
      || | |   |||   ||               | | | || ||       
seq2  CATACC---CAAAAGTA---------------TGGGAAAAAAA-------  70

seq1  TGTCTGCACATTATCTGTGGTGACTGAGCAGCAGGCAGTATAAATGCTGC  149
          || |    | | ||| | |  ||| |  |  || ||  |      |
seq2  ----TGAA----AGCAGTGCTAA--GAGAAAAATTCA-TAGCA------C  103

seq1  AAAGACCTGCCCCCCTTTGTGAGCAGTACTATTAGCCTCAAGTCTTTAAA  199
       |||   ||||| |                || |     |||  |||  |
seq2  TAAG---TGCCCTC----------------ATAA-----AAGAATTTGGA  129

seq1  G-GACACTGTATTAGGAAATAAGACAAATGAATATATTAAAGAGATCTAT  248
      | ||  || || ||| |  | | ||     | || |   || ||  ||| 
seq2  GAGAACCTATACTAGTATCTTA-AC-----AGTACACCTAAAAGCCCTA-  172

seq1  GAACAAAAGGAAGGAAATTCACCAAAGAGGAGTAGACATCAGGAAATAAT  298
      ||||||||  ||| |||   ||  |||||||  |||||  |  ||| |||
seq2  GAACAAAA-AAAGCAAACAGACACAAGAGGACAAGACAGGA-AAAAAAAT  220

seq1  CGAACTCAGGAGCGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAA  348
      | ||||||||   | |||||||||| | ||| ||   |||| ||   | |
seq2  CAAACTCAGGGTAGTAATCAACCAATTAGAATCAGAGAGAAGTAAAAACA  270

seq1  GAATCAACCAAACAAGGAGCTGGTTCTTTGAGAAAATCAACAATATAGAT  398
       ||| ||| |||| |  ||||||||||||||||||||||| ||  |||||
seq2  CAATTAACAAAACCAAAAGCTGGTTCTTTGAGAAAATCAATAAGGTAGAT  320

seq1  AAATCCTTAGCCAGACTCACTAAAGGGCACAGGGACAGCATCCTAATTAA  448
      ||| | ||||  | ||| |||||||| |||||    ||  ||| ||||||
seq2  AAACCATTAGGTAAACTAACTAAAGGACACAG----AGTGTCCAAATTAA  366

seq1  CAAAATCAGAAATGAAAAGGGA  470
      ||||||||||||||||||||||
seq2  CAAAATCAGAAATGAAAAGGGA  388