BAC Information

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BAC

Clone NameB6Ng01-215C01
Chromosome5 (Build37)
Map Location 138,636,687 - 138,637,801
singlet/doubletsinglet
Overlap genenone
Upstream geneAche, 2700038N03Rik, Ars2, Trip6, Slc12a9, Ephb4, Zan, EG665591, Epo, Pop7, EG666372, Perq1, Gnb2, Actl6b, Trfr2, Mospd3, EG640050, Pcolce, Fbxo24, Lrch4, Sap25, Irs3, Hrbl, LOC624083, 6430598A04Rik, Tsc22d4, 2010007H12Rik, Bcdin3, Zcwpw1, Pilra, Pilrb1, Pilrb2, LOC100041016, LOC100041027, Cyp3a13, LOC666429, Gje1, Azgp1, EG243302, LOC100041050, Smok3a, Smok3b, Smok3c, Zkscan1, Zscan21, Zfp113, Cops6, Mcm7, Ap4m1, Taf6, 2610019P18Rik, BC038925
Downstream geneGm454, BC055004, 0910001L09Rik, BC037034, Gal3st4, Gpc2, Stag3, Got2-ps1, 2610020C11Rik, LOC433955, EG666533, 1700123K08Rik, Zfp68, LOC665882, A430033K04Rik, BC004044, EG384244, Pdgfa, Prkar1b, Heatr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-215C01.bB6Ng01-215C01.g
ACCGA032185GA032186
length4381,111
definitionB6Ng01-215C01.b B6Ng01-215C01.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
tcagtttagttctataccatattttttgatggagctgtttggtttttttg
tatttggttttgttttgttttgttggttattaacttcttgagttctttat
atattttggatagttttgttttgttggtttttaacttcttgagttcttta
tatattttggatattagccctctatcagatgtggggttagtgaagatttt
ttccccaatctgtaggctgctgatttgtcttatcgaccatgtcctttgcc
tcacagaagcgttccattttcatgaggttccatttatcaattgttgatct
tagagcatgagccactttaggaaatgtccccctgtgccaatgatctcaag
gttctttcccactttcttttctactagattcagtgtatctggttatttat
gttaaggtccttgatcctcttggacttgagctttgtac
gaattctgaaggctactttggaagagtcggttctctccatcctgtgggtc
cccaggatcgagttcaggttgtcggacttgacgccagggaccctttacct
gctgagccatcctgatttatattcttgttaggaccttcaaaaataaaaat
cgaccgcaagtcatactgtcctgatgtaaatgcaaaatgctgattgcaat
aatctttgggattgtaactgctgcagcaaaagaggaacagtgtggccaat
agcttgttcctcctaggatgcacactggtgagacggtgccagacacagag
taaccccttagtaacctgacttcttttgtttattttgtttagacagtctc
acatactccagtctggcttcaaagctgaggctggtcttgaactcctgatt
cttgttttttgtttttttttgttttttgttttttttttttgagacaggat
ttctctgtgtagccctggctgtcctggaactcactctgtagaccaggatg
gcgtgcgccaccactgcccagcatgaactcctgattcttatgcttccacc
ttccaaatactggattacagactaacaggcatgtgctgccccacctggct
ttcacctgactttagttcattcattgattcactcagcggcatctgaaatg
tctcaggcactgatgtaggtcttgtgatgccactacagtgagcgaatgac
aagttcccaccccaacacacgagtcacattccattcaggagacagacaag
acaaccataatagtagtagcaaccaaataattataggttgtggcatacaa
cacacgtgcgtaggatgaggaaagagagcaggagagagcagggcacagag
aagctgcttgatgttgagagattacagaaagcctctgaaagatgtcattc
tttcttttttttttgtttttttttttttgttttcgagacagggttttctc
tggtgtagccctggctgttcctgtagaccactcttgtagatcaggctggg
ctcgaattcagaaatccccctgctctggcctccagtgctgggattaaagg
cgggcgcaaccactgctcggctgcctctatttcttacatcaatttatttg
cagtgggtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_138636687_138637801
seq2: B6Ng01-215C01.g_67_1177

seq1  GAATTCTGAAGGCTACTTTGGAAGAGTCGGTTCTCTCCATCCTGTGGGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAAGGCTACTTTGGAAGAGTCGGTTCTCTCCATCCTGTGGGTC  50

seq1  CCCAGGATCGAGTTCAGGTTGTCGGACTTGACGCCAGGGACCCTTTACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGATCGAGTTCAGGTTGTCGGACTTGACGCCAGGGACCCTTTACCT  100

seq1  GCTGAGCCATCCTGATTTATATTCTTGTTAGGACCTTCAAAAATAAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGCCATCCTGATTTATATTCTTGTTAGGACCTTCAAAAATAAAAAT  150

seq1  CGACCGCAAGTCATACTGTCCTGATGTAAATGCAAAATGCTGATTGCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACCGCAAGTCATACTGTCCTGATGTAAATGCAAAATGCTGATTGCAAT  200

seq1  AATCTTTGGGATTGTAACTGCTGCAGCAAAAGAGGAACAGTGTGGCCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTGGGATTGTAACTGCTGCAGCAAAAGAGGAACAGTGTGGCCAAT  250

seq1  AGCTTGTTCCTCCTAGGATGCACACTGGTGAGACGGTGCCAGACACAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGTTCCTCCTAGGATGCACACTGGTGAGACGGTGCCAGACACAGAG  300

seq1  TAACCCCTTAGTAACCTGACTTCTTTTGTTTATTTTGTTTAGACAGTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCCTTAGTAACCTGACTTCTTTTGTTTATTTTGTTTAGACAGTCTC  350

seq1  ACATACTCCAGTCTGGCTTCAAAGCTGAGGCTGGTCTTGAACTCCTGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACTCCAGTCTGGCTTCAAAGCTGAGGCTGGTCTTGAACTCCTGATT  400

seq1  CTTGTTTTTTGTTTTTTTTTGTTTTTTGTTTTTTTTTTTTGAGACAGGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTTTTGTTTTTTTTTGTTTTTTGTTTTTTTTTTTTGAGACAGGAT  450

seq1  TTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGATG  500

seq1  GCGTGCGCCACCACTGCCCAGCATGAACTCCTGATTCTTATGCTTCCACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGCGCCACCACTGCCCAGCATGAACTCCTGATTCTTATGCTTCCACC  550

seq1  TTCCAAATACTGGATTACAGACTAACAGGCATGTGCTGCCCCACCTGGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAATACTGGATTACAGACTAACAGGCATGTGCTGCCCCACCTGGCT  600

seq1  TTCACCTGACTTTAGTTCATTCATTGATTCACTCAGCGGCATCTGAAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCTGACTTTAGTTCATTCATTGATTCACTCAGCGGCATCTGAAATG  650

seq1  TCTCAGGCACTGATGTAGGTCTTGTGATGCCACTACAGTGAGCGAATGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGGCACTGATGTAGGTCTTGTGATGCCACTACAGTGAGCGAATGAC  700

seq1  AAGTTCCCACCCCAACACACGAGTCACATTCCATTCAGGAGACAGACAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCCCACCCCAACACACGAGTCACATTCCATTCAGGAGACAGACAAG  750

seq1  ACAACCATAATAGTAGTAGCAACCAAATAATTATAGGTTGTGGCATACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCATAATAGTAGTAGCAACCAAATAATTATAGGTTGTGGCATACAA  800

seq1  CACACGTGCGTAGGATGAGGAAAGAGAGCAGGAGAGAGCAGGGCACAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACGTGCGTAGGATGAGGAAAGAGAGCAGGAGAGAGCAGGGCACAGAG  850

seq1  AAGCTGCTTGATGTTGAGAGATTACAGAAAGCCTCTGAAAGATGTTCATT  900
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AAGCTGCTTGATGTTGAGAGATTACAGAAAGCCTCTGAAAGATG-TCATT  899

seq1  CTTTCTTTTTTTTTTGTTTTTTTTTTTTTGTTTTTTCGAGACAGGG-TTT  949
      ||||||||||||||||||||||||||||||  |||||||||||||| |||
seq2  CTTTCTTTTTTTTTTGTTTTTTTTTTTTTG--TTTTCGAGACAGGGTTTT  947

seq1  CTCT-GTGTAGCCCTGGCTG-TCCTGTAGACCACTC-TGTAGATCAGGCT  996
      |||| ||||||||||||||| ||||||||||||||| |||||||||||||
seq2  CTCTGGTGTAGCCCTGGCTGTTCCTGTAGACCACTCTTGTAGATCAGGCT  997

seq1  GGCCTCGAATTCAGAAATCCCCCTGCCTCT-GCCTCCCAAGTGCTGGGAT  1045
      || |||||||||||||||||||||| |||| ||||||  |||||||||||
seq2  GGGCTCGAATTCAGAAATCCCCCTG-CTCTGGCCTCC--AGTGCTGGGAT  1044

seq1  TAAAGGCGTGCGCCACCACTGCTCGGCTGCTTCTTTATTTCTTACATCCA  1095
      |||||||| |||| ||||||||||||||||  || ||||||||||||| |
seq2  TAAAGGCGGGCGCAACCACTGCTCGGCTGC--CTCTATTTCTTACATCAA  1092

seq1  TTTATTTTGCAGTGTGTGTG  1115
      |||| ||||||||| |||||
seq2  TTTA-TTTGCAGTGGGTGTG  1111