BAC Information

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BAC

Clone NameB6Ng01-216I05
Chromosome5 (Build37)
Map Location 144,076,068 - 144,263,394
singlet/doubletdoublet
Overlap geneE130309D02Rik, Zdhhc4, Grid2ip, Kdelr2, LOC231869, LOC670671, Daglb
Upstream geneMmd2, Wipi2, Slc29a4, Tnrc18, LOC100038954, LOC100041004, LOC100038972, LOC100038984, LOC100042525, LOC100038888, Zfp469, LOC666788, Fbxl18, D430018E03Rik, LOC100042558, Actb, Fscn1, 2810055G22Rik, LOC667809, Olfr718-ps1, LOC640324, LOC100042605, Rbak, 4933411G11Rik, Spdyb, Zfp12, Zfp316, Gm792
Downstream geneRac1, 2810453I06Rik, Pscd3, Usp42, Eif2ak1, 4921520G13Rik, Jtv1, Pms2, 4930526H21Rik, AU022870, Ocm, Lmtk2, Bhlhb8, 2210010N04Rik, Bri3, Baiap2l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-216I05.bB6Ng01-216I05.g
ACCGA033183GA033184
length1,039897
definitionB6Ng01-216I05.b B6Ng01-216I05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,076,068 - 144,077,105)(144,262,500 - 144,263,394)
sequence
gaattcagtctctgtaaaaacaaacccggaagagaagctgtgagaagagg
gcctccacctgccccttagctcccaccctaagagattagggaagtggatg
cttagaatcccagcgcacacgaggctgagtctagccgataatgagtttca
ggctggcccgagatacatggtacacagaaagacagtgtttgaaaaaggaa
aacagatctattctttttcccagggtgtatttttttcacccttcagaagc
ctaagcccgggggggcttaactctatgaataagcaaaggaaaaaaccctg
catctagttaagcgacatcccagagggatgttaagtagccagttcacaaa
gccaccaccccggatcattcattggtgggcgactgtcacacgcctgcgaa
acgggcacgcggctgagcaacgccgctggactgcaaggccgggggagcgg
aaagaggagcgagacctcggggcgagctcctgtcaccgagcgagggcacg
gccggggcgggcaccttgggctgcgcgccgcgctccttgggcacttggaa
cacgaactcctccagcagctccacggagcccttgtccacgatgggcaacg
gcgcgctctgcagctggctgctgaagtagatgtccaggtggtacagcacc
tccttggcggcgctcagcgcgtcgcgccgcagcagcgagtggcggatgtc
gctcatggtgcggccgccctgtccccgccgcgagtcctacttccgcccgg
agacaaagaggcgcgaccggcctgggccccgacgcgggcaagggtcgcgg
cgcccgcccgcctctaacaggcgccaacccgctcaggggaccattcgtcg
ccgctgccgccgccgccacgggccagcgagtatcctggggtccgactgcg
gcgccgcccagagccgcgggagccgacgccgctcggccgaccggcggctg
aatggcgacgcggcccgcaggggccaagctcgggctgcggccgcccgctc
ctcgttggccgccctctggcggttgagccgcacgggcaa
gaattccatcctcagcaccatatacaaccaggtacggtagtgcacacctg
taattctgcacttgggaggtaaaggcagaagttcatggtcaacggctaca
cagttcaaggccagcccaggttacctgagaccctatctcaagcaaaaaca
aaaaagccagtggtggcctttaatcccagtactcaggaggcagggggaga
ttcgggacagcctagcgctacacagagaaaccctgtctcacaaaaacaaa
aaccttagatgtctggtaagaagcgaatattaaaatttctggttagcaac
agcatttttttaaagggcaagaaaataaaagcacctacagcccgtgatac
acactttggcagtggtttgaatactgtcaaaactcccacggacacagatc
tagtctttatgaatattgatcacatttattttatgtgtttctgtggttgg
catggcacatgtgtatggtgagggtagagggtcagaggacaaactgtggg
acctggctgtctcctccacccccttgggttccaagggctgtcctcacact
gggcttggtgccacatggcttacccactaggcttccctccctccttccct
ttctaaaactacccaatggcaatagaactagggactcacacatgctaggc
aactggtctaccactgagccccagccctgccccctcccttagcttccttt
tgctctgcctgggcccggcctcacatttttggcagtcctacctcagtctc
ccaggtgctgggattataggccaacgctaactgtgcccccctcatggcta
tcagcctctattggctaagtcctgtcttctcttcctgtgggtgtgggttt
gaacctaagcctcctgaatgcctaatgaagttgctctactcactgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_144076068_144077105
seq2: B6Ng01-216I05.b_46_1084

seq1  GAATTCAGTCTCTGTAAAAACAAACCCGGAAGAGAAGCTGTGAGAAGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCTCTGTAAAAACAAACCCGGAAGAGAAGCTGTGAGAAGAGG  50

seq1  GCCTCCACCTGCCCCTTAGCTCCCACCCTAAGAGATTAGGGAAGTGGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCACCTGCCCCTTAGCTCCCACCCTAAGAGATTAGGGAAGTGGATG  100

seq1  CTTAGAATCCCAGCGCACACGAGGCTGAGTCTAGCCGATAATGAGTTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAATCCCAGCGCACACGAGGCTGAGTCTAGCCGATAATGAGTTTCA  150

seq1  GGCTGGCCCGAGATACATGGTACACAGAAAGACAGTGTTTGAAAAAGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGCCCGAGATACATGGTACACAGAAAGACAGTGTTTGAAAAAGGAA  200

seq1  AACAGATCTATTCTTTTTCCCAGGGTGTATTTTTTTCACCCTTCAGAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGATCTATTCTTTTTCCCAGGGTGTATTTTTTTCACCCTTCAGAAGC  250

seq1  CTAAGCCCGGGGGGGCTTAACTCTATGAATAAGCAAAGGAAAAAACCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCCCGGGGGGGCTTAACTCTATGAATAAGCAAAGGAAAAAACCCTG  300

seq1  CATCTAGTTAAGCGACATCCCAGAGGGATGTTAAGTAGCCAGTTCACAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAGTTAAGCGACATCCCAGAGGGATGTTAAGTAGCCAGTTCACAAA  350

seq1  GCCACCACCCCGGATCATTCATTGGTGGGCGACTGTCACACGCCTGCGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCACCCCGGATCATTCATTGGTGGGCGACTGTCACACGCCTGCGAA  400

seq1  ACGGGCACGCGGCTGAGCAACGCCGCTGGACTGCAAGGCCGGGGGAGCGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGCACGCGGCTGAGCAACGCCGCTGGACTGCAAGGCCGGGGGAGCGG  450

seq1  AAAGAGGAGCGAGACCTCGGGGCGAGCTCCTGTCACCGAGCGAGGGCACG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGGAGCGAGACCTCGGGGCGAGCTCCTGTCACCGAGCGAGGGCACG  500

seq1  GCCGGGGCGGGCACCTTGGGCTGCGCGCCGCGCTCCTTGGGCACTTGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGGGGCGGGCACCTTGGGCTGCGCGCCGCGCTCCTTGGGCACTTGGAA  550

seq1  CACGAACTCCTCCAGCAGCTCCACGGAGCCCTTGTCCACGATGGGCAACG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGAACTCCTCCAGCAGCTCCACGGAGCCCTTGTCCACGATGGGCAACG  600

seq1  GCGCGCTCTGCAGCTGGCTGCTGAAGTAGATGTCCAGGTGGTACAGCACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCGCTCTGCAGCTGGCTGCTGAAGTAGATGTCCAGGTGGTACAGCACC  650

seq1  TCCTTGGCGGCGCTCAGCGCGTCGCGCCGCAGCAGCGAGTGGCGGATGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGGCGGCGCTCAGCGCGTCGCGCCGCAGCAGCGAGTGGCGGATGTC  700

seq1  GCTCATGGTGCGGCCGCCCTGTCCCCGCCGCGAGTCCTACTTCCGCCCGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATGGTGCGGCCGCCCTGTCCCCGCCGCGAGTCCTACTTCCGCCCGG  750

seq1  AGACAAAGAGGCGCGACCGGCCTGGGCCCCGACGCGGGC-AGGGTCGCGG  799
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGACAAAGAGGCGCGACCGGCCTGGGCCCCGACGCGGGCAAGGGTCGCGG  800

seq1  CGCCCGCCCGCCTCTAACAGGCGCCAACCCGCTCAGGGGACCA-TCGTCG  848
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CGCCCGCCCGCCTCTAACAGGCGCCAACCCGCTCAGGGGACCATTCGTCG  850

seq1  CCGCTGCCGCCGCCGCCACGGGCCAGCGAGTATCCTGGGGTCCGACTGCG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTGCCGCCGCCGCCACGGGCCAGCGAGTATCCTGGGGTCCGACTGCG  900

seq1  GCGCCGCCCAGAGCCGCGGGAGCCGACGCCGCTCGGCCGAACCGGCGGCT  948
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GCGCCGCCCAGAGCCGCGGGAGCCGACGCCGCTCGGCCG-ACCGGCGGCT  949

seq1  GAATGGCGACGGCGGCCCGCAGGGGCCAAGCTCGGGCTGCGGCCGCGCGC  998
      |||||||||| ||||||||||||||||||||||||||||||||||| |||
seq2  GAATGGCGAC-GCGGCCCGCAGGGGCCAAGCTCGGGCTGCGGCCGCCCGC  998

seq1  T-CTCG-TGGGCGCCCCCTGGCGGTGAAGCCCGCACGGGCAA  1038
      | |||| ||| ||||| ||||||||  || ||||||||||||
seq2  TCCTCGTTGGCCGCCCTCTGGCGGTTGAG-CCGCACGGGCAA  1039

seq1: chr5_144262500_144263394
seq2: B6Ng01-216I05.g_67_962 (reverse)

seq1  TCAGTG-GTAGAGC-ACTTCCTTAAGCATTCAAGAGGCTCTAGGTTCAAA  48
      |||||| ||||||| ||||| ||| ||||||| |||||| ||||||||||
seq2  TCAGTGAGTAGAGCAACTTCATTAGGCATTCAGGAGGCT-TAGGTTCAAA  49

seq1  CCCACACCCACAGGAAGAGAAGACAGGACTTTAGCCAATAGAGGCTGATA  98
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CCCACACCCACAGGAAGAGAAGACAGGAC-TTAGCCAATAGAGGCTGATA  98

seq1  GCCATGAGGGGGGCAACAGTTAGCGTTGGCCTATAATCCCAGCACCTGGG  148
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GCCATGAGGGGGGC-ACAGTTAGCGTTGGCCTATAATCCCAGCACCTGGG  147

seq1  AGACTGAGGTAGGACTGCCAAAAATGTGAGGCCGGG-CCAGGCAGAGCAA  197
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AGACTGAGGTAGGACTGCCAAAAATGTGAGGCCGGGCCCAGGCAGAGCAA  197

seq1  AAGGAAGCTAA-GGAGGGGGCAGGGCTGGGGCTCAGTGGTAGACCAGTTG  246
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGCTAAGGGAGGGGGCAGGGCTGGGGCTCAGTGGTAGACCAGTTG  247

seq1  CCTAGCATGTGTGAGTCCCTAGTTCTATTGCCATTGGGTAGTTTTAGAAA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCATGTGTGAGTCCCTAGTTCTATTGCCATTGGGTAGTTTTAGAAA  297

seq1  GGGAAGGAGGGAGGGAAGCCTAGTGGGTAAGCCATGTGGCACCAAGCCCA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGGAGGGAGGGAAGCCTAGTGGGTAAGCCATGTGGCACCAAGCCCA  347

seq1  GTGTGAGGACAGCCCTTGGAACCCAAGGGGGTGGAGGAGACAGCCAGGTC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAGGACAGCCCTTGGAACCCAAGGGGGTGGAGGAGACAGCCAGGTC  397

seq1  CCACAGTTTGTCCTCTGACCCTCTACCCTCACCATACACATGTGCCATGC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGTTTGTCCTCTGACCCTCTACCCTCACCATACACATGTGCCATGC  447

seq1  CAACCACAGAAACACATAAAATAAATGTGATCAATATTCATAAAGACTAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCACAGAAACACATAAAATAAATGTGATCAATATTCATAAAGACTAG  497

seq1  ATCTGTGTCCGTGGGAGTTTTGACAGTATTCAAACCACTGCCAAAGTGTG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGTCCGTGGGAGTTTTGACAGTATTCAAACCACTGCCAAAGTGTG  547

seq1  TATCACGGGCTGTAGGTGCTTTTATTTTCTTGCCCTTTAAAAAAATGCTG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACGGGCTGTAGGTGCTTTTATTTTCTTGCCCTTTAAAAAAATGCTG  597

seq1  TTGCTAACCAGAAATTTTAATATTCGCTTCTTACCAGACATCTAAGGTTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAACCAGAAATTTTAATATTCGCTTCTTACCAGACATCTAAGGTTT  647

seq1  TTGTTTTTGTGAGACAGGGTTTCTCTGTGTAGCGCTAGGCTGTCCCGAAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTGTGAGACAGGGTTTCTCTGTGTAGCGCTAGGCTGTCCCGAAT  697

seq1  CTCCCCCTGCCTCCTGAGTACTGGGATTAAAGGCCACCACTGGCTTTTTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCCTGCCTCCTGAGTACTGGGATTAAAGGCCACCACTGGCTTTTTT  747

seq1  GTTTTTGCTTGAGATAGGGTCTCAGGTAACCTGGGCTGGCCTTGAACTGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGCTTGAGATAGGGTCTCAGGTAACCTGGGCTGGCCTTGAACTGT  797

seq1  GTAGCCGTTGACCATGAACTTCTGCCTTTACCTCCCAAGTGCAGAATTAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCGTTGACCATGAACTTCTGCCTTTACCTCCCAAGTGCAGAATTAC  847

seq1  AGGTGTGCACTACCGTACCTGGTTGTATATGGTGCTGAGGATGGAATTC  895
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTGCACTACCGTACCTGGTTGTATATGGTGCTGAGGATGGAATTC  896