BAC Information

Click to search

BAC

Clone NameB6Ng01-216I17
Chromosome16 (Build37)5 (Build37)
Map Location 81,954,170 - 81,955,31963,607,729 - 63,608,069
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneNcam2, LOC621470, LOC435484, Pgk1-ps1
Downstream geneEG665260
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-216I17.bB6Ng01-216I17.g
ACCGA033206GA033207
length1,1521,006
definitionB6Ng01-216I17.b B6Ng01-216I17.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(81,954,170 - 81,955,319)(63,607,729 - 63,608,069)
sequence
gaattcacctgctagaacgatatgcaaacctccaattacatgctttgttt
tataacttccttggtcatggtggttcttcccatcaacagaaaagtcacta
agacaatgatggtgagatggatcagcaaggaaagccacaggcaaagtcag
gcaagcacacaaagttgatctccataactgcagcaatggagaaaaaagta
aatatatgaagttgtctcgttacctccacaagagtgtctcgacataggca
atccccttctctcacaccatgtatacaacaactaatacaaataaaataaa
cactagtctattgtctaaatatggctccatcctctgagtcactggccact
atttataaagtattaaaatgtttgagaaaaatgcagatgattgtcatggt
taatttaaactcaggttgcctctactaaaggttatataggtgaaattttc
tgcatagatttgtgagggtattttattaaatatggcgttcactggaatgg
ctgtatagtaattcgcatctctatatctctccatgcttatcccaagcctc
agagcccagtgcacaagagaggttagaaaagaatgtgagccttagataga
actagagcatagcacacactaggacttctggttggttgagttctgggcag
ctgtgactgcttgtgcgaaaattctcaagataaaaacagtgaacattcta
acaatggagtgaagaaggattgtgagcctccacccatgaagcaagtgcta
cagactgttaatggcttcttggaaaaagaggatcagatttttttgtttgt
ttggtgtttttaggatatggtcttcctatctgcatctcaattttgcagat
ggacttacacctgtgaatatatgggtagcacagttcaattattattttaa
ttattattattatactatctttgaagaaaagtacagggtgaatgtcatgg
catgtatgtaatggttgatgattctgtggaacaatggaacttgtaatgtc
cttgggactctctggctctacaatcttttctttctattaggtgcccctct
tcccaggattctgcaatcctctgcttatgtttggctgtgggcctctaatt
cttatttttcatcctttgcgaaaggacaatcgattttaattttaattgga
ga

gaattcacttttttaatataaaatctaagtcattaaatcaacgatgtctt
ttttttttcattttttttctaggtccaggaagaatttttagagagtgggt
catcttggaatttctcctcttactcctacataatctagaagagtagcgac
attatagtacattgttaaagtacatctcctgatattggacaccatcctca
ggaaatattttttcctgcaaatattcctgttattattctttacttctttt
ttatttttaatttttaaaatttcattattttttattttatatatttttta
tttttaatttttattagatattttatttacatttcaaatgctatccccaa
atcccactttaccttcccccctgctctgctctccaacccacccacactcg
attcctggccctggcattcccctgtactggggcatatgatcttcacaata
ccaagggcctctcctcccattgatggcagactaggccacccgttgctaca
tatggaactagagacacagctcagggggaaggggggcagggtactggtta
gttcatattgtggtcccacctatagggttgcatacccctttagctccttg
ggtactttctctagctctttcattagaggccctgtgatcaaactaataga
tgactgtgggcatccacttctgtattgccaggcattggcatagactcatg
ggagaaagctattattctttacttctttttttttttcctttttttttaaa
tctttttttatttttttttttttttaggtattttcctcgtttaaattttc
aatgctatcccaaaggtcccccatacccaccccaccgatcccctaaccac
ccactcccccttttggccctggcatcccctgtactgggcatataaagttt
gcaagttcaatggggcttctctttgcagtgatggccgactagccatcttt
gatacatatgcagctagagacaagagctctggggtactggtagttcatat
tgtggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_81954170_81955319
seq2: B6Ng01-216I17.b_45_1196

seq1  GAATTCACCTGCTAGAACGATATGCAAACCTCCAATTACATGCTTTGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTGCTAGAACGATATGCAAACCTCCAATTACATGCTTTGTTT  50

seq1  TATAACTTCCTTGGTCATGGTGGTTCTTCCCATCAACAGAAAAGTCACTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACTTCCTTGGTCATGGTGGTTCTTCCCATCAACAGAAAAGTCACTA  100

seq1  AGACAATGATGGTGAGATGGATCAGCAAGGAAAGCCACAGGCAAAGTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAATGATGGTGAGATGGATCAGCAAGGAAAGCCACAGGCAAAGTCAG  150

seq1  GCAAGCACACAAAGTTGATCTCCATAACTGCAGCAATGGAGAAAAAAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCACACAAAGTTGATCTCCATAACTGCAGCAATGGAGAAAAAAGTA  200

seq1  AATATATGAAGTTGTCTCGTTACCTCCACAAGAGTGTCTCGACATAGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATGAAGTTGTCTCGTTACCTCCACAAGAGTGTCTCGACATAGGCA  250

seq1  ATCCCCTTCTCTCACACCATGTATACAACAACTAATACAAATAAAATAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCTTCTCTCACACCATGTATACAACAACTAATACAAATAAAATAAA  300

seq1  CACTAGTCTATTGTCTAAATATGGCTCCATCCTCTGAGTCACTGGCCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGTCTATTGTCTAAATATGGCTCCATCCTCTGAGTCACTGGCCACT  350

seq1  ATTTATAAAGTATTAAAATGTTTGAGAAAAATGCAGATGATTGTCATGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATAAAGTATTAAAATGTTTGAGAAAAATGCAGATGATTGTCATGGT  400

seq1  TAATTTAAACTCAGGTTGCCTCTACTAAAGGTTATATAGGTGAAATTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTAAACTCAGGTTGCCTCTACTAAAGGTTATATAGGTGAAATTTTC  450

seq1  TGCATAGATTTGTGAGGGTATTTTATTAAATATGGCGTTCACTGGAATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAGATTTGTGAGGGTATTTTATTAAATATGGCGTTCACTGGAATGG  500

seq1  CTGTATAGTAATTCGCATCTCTATATCTCTCCATGCTTATCCCAAGCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATAGTAATTCGCATCTCTATATCTCTCCATGCTTATCCCAAGCCTC  550

seq1  AGAGCCCAGTGCACAAGAGAGGTTAGAAAAGAATGTGAGCCTTAGATAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCCAGTGCACAAGAGAGGTTAGAAAAGAATGTGAGCCTTAGATAGA  600

seq1  ACTAGAGCATAGCACACACTAGGACTTCTGGTTGGTTGAGTTCTGGGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAGCATAGCACACACTAGGACTTCTGGTTGGTTGAGTTCTGGGCAG  650

seq1  CTGTGACTGCTTGTGCGAAAATTCTCAAGATAAAAACAGTGAACATTCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGACTGCTTGTGCGAAAATTCTCAAGATAAAAACAGTGAACATTCTA  700

seq1  ACAATGGAGTGAAGAAGGATTGTGAGCCTCCACCCATGAAGCAAGTGCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGGAGTGAAGAAGGATTGTGAGCCTCCACCCATGAAGCAAGTGCTA  750

seq1  CAGACTGTTAATGGCTTCTTGGAAAAAGAGGATCAGATTTTTTTGTTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTGTTAATGGCTTCTTGGAAAAAGAGGATCAGATTTTTTTGTTTGT  800

seq1  TTGGTGTTTTTAGGATATGGTCTTCCTATCTGCATCTCAATTTTGCAGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGTTTTTAGGATATGGTCTTCCTATCTGCATCTCAATTTTGCAGAT  850

seq1  GGACTTACACCTGTGAATATATGGGTAGCACAGTTCAATTATTATTTTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTACACCTGTGAATATATGGGTAGCACAGTTCAATTATTATTTTAA  900

seq1  TTATTATTATTATACTATCTTTGAAGAAAAGTACAGGGTGAATGTCATGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATTATTATACTATCTTTGAAGAAAAGTACAGGGTGAATGTCATGG  950

seq1  CATGTATGTAATGGTTGATGATTCTGT-GAACAATGG-ACTTGTAATGTC  998
      ||||||||||||||||||||||||||| ||||||||| ||||||||||||
seq2  CATGTATGTAATGGTTGATGATTCTGTGGAACAATGGAACTTGTAATGTC  1000

seq1  CTT-GGACTCTCTGGCTCCTACAATCTTTCCTTCCTA-TAGGTGCCCCTC  1046
      ||| ||||||||||||| ||||||||||| ||| ||| ||||||||||||
seq2  CTTGGGACTCTCTGGCT-CTACAATCTTTTCTTTCTATTAGGTGCCCCTC  1049

seq1  TTCCCCAGGATTCTGCAAT-CTCTGCCTAATGTTTGGCTGTGGGTCTCTA  1095
      || |||||||||||||||| ||||| || ||||||||||||||| |||||
seq2  TT-CCCAGGATTCTGCAATCCTCTG-CTTATGTTTGGCTGTGGGCCTCTA  1097

seq1  AATCT--ATTTTCATCCTTTGCGGAAAGACAATCGAATATTAAATTTTAA  1143
      | |||   ||||||||||||||| || |||||||||   || ||||||||
seq2  ATTCTTATTTTTCATCCTTTGCGAAAGGACAATCGA--TTTTAATTTTAA  1145

seq1  ATGGAGA  1150
       ||||||
seq2  TTGGAGA  1152


seq1: chr5_63607729_63608069
seq2: B6Ng01-216I17.g_789_1070 (reverse)

seq1  ACAACAATATGAACTAACCAGTACCACGGAGCTCTTGTCTTTAGCTGCAT  50
      || |||||||||||| ||||||||| | |||||||||||| |||||||||
seq2  ACCACAATATGAACT-ACCAGTACCCCAGAGCTCTTGTCTCTAGCTGCAT  49

seq1  ATGTATCAAAAGATGTCCTAGTTGGTCATCACTGCAAAGAG-AGGCCCAT  99
      ||||||| |||||||  ||||| || ||||||||||||||| || |||||
seq2  ATGTATC-AAAGATG-GCTAGTCGGCCATCACTGCAAAGAGAAGCCCCAT  97

seq1  TGGACTTGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAA  149
      || |||||||||||||||||| ||||||||||||| | ||||||||| ||
seq2  TGAACTTGCAAACTTTATATG-CCCAGTACAGGGG-ATGCCAGGGCC-AA  144

seq1  AAGGGGGAGTGGGTGGGTAGGGGATTGGGGGGGTGGGTATGGGGGACCTT  199
      |||||||||||||||| |||||||| || |||||||||||||||||||||
seq2  AAGGGGGAGTGGGTGGTTAGGGGATCGGTGGGGTGGGTATGGGGGACCTT  194

seq1  TGGGATAGCATTGAAAATGTAAACGAGGAAAATACCTAATTAAAAAAAAA  249
      |||||||||||||||||| ||||||||||||||||||||  |||||||||
seq2  TGGGATAGCATTGAAAATTTAAACGAGGAAAATACCTAA--AAAAAAAAA  242

seq1  GTTCTTTTCTTAAATGTGTATCACTATAATTGCCAAACTTCACCTGAAAA  299
                 |||           ||||     |||         || |
seq2  -----------AAA-----------ATAA-----AAA---------AAGA  256

seq1  TTAAAAATAAAAAAGAGCTTTCTTACATGAAAAAAAAAAAAG  341
      || |||| ||||                | ||||||||||||
seq2  TTTAAAAAAAAA----------------GGAAAAAAAAAAAG  282


| Home | SequenceCutter | Blast | Download |