BAC Information

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BAC

Clone NameB6Ng01-216M15
Chromosome5 (Build37)
Map Location 66,377,989 - 66,496,587
singlet/doubletdoublet
Overlap gene9130230L23Rik, BC013481
Upstream gene9130005N14Rik, Tmem156, Klhl5, Wdr19, Rfc1, Klb, Rpl9, Lias, Ugdh, 1110003E01Rik, 4930589O11Rik, Hip2, 9030416H16Rik, 1700022K14Rik, LOC384261, B3bp, LOC100041809, Rhoh, LOC626641, EG666827, Chrna9
Downstream geneLOC626714, LOC666854, LOC100042394, Nsun7, Apbb2, Uchl1, LOC100041876, 3732412D22Rik, LOC624662, Phox2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-216M15.bB6Ng01-216M15.g
ACCGA033385GA033386
length851490
definitionB6Ng01-216M15.b B6Ng01-216M15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,495,738 - 66,496,587)(66,377,989 - 66,378,484)
sequence
gaattctggttttgtttttgcttttgttttctttttttctttagtgttca
aagcaatgttgcttttcctttctgtagatggaatttcatctaacccaggc
tggacttgaactcttgatcttcctgcctctaccctcgaatgccaggattt
ggggtggggtggggcaggcgttgcgcatcgccatgcctggcaatagaaga
ttcatgcaacgttttcataatacatgtcattgtactttgctcatattctg
cccacagccccttctctttctccagagagtcttgtttttgcttgcatgtt
acttacattctatatactagaaaaaatgaagtgtttgtctttgagtctgg
tttattttaattaacatcattctccccggtcccatccactcttctgcaag
tgacatttagttccttctccaatgagtctgtgtatgcccttttctttatg
gatttctctgttaatgggcatctaggttgatcctatcgtttggctgtgtg
catagtggaacaaccaacatatgtgcaagaatctctatagcatgttgact
tagctctatagcatgttgacgccgtctgtagagttaagcatgttccatga
ggatggtgtagtctttctgctttccacagtggaccgcaaccctttacatt
cccgttggctttccattgtgagcttgagctactaggttgtgtcaagtgct
gcgctccacctcagatgcagaagtgagacacagccctgtcttcatggaaa
ctacatctggggataactgaccaccaaccaaacttggccagtatttaatt
gtgacctgtgataggtacttcgagaatggggtgggagaggaagagggaat
t
acagtggctatgaccaccttcacagggcctgcacgagactgggcccatca
acagtgtattaatgagtggaggtcacgaggccccatctccctgaggctct
gtaagcagtgagtggttgactgcagaatggagagaggttttcttcaggga
tgtagctgcctgtaaggtgtctaagttcctgtaagtaaccagcccctcac
ctttgcttatgtaagtaaccctaaagaaacttgcagggtcatcagaggaa
aagacaggaagttgggagaggaagctgagaaggggaagggagttagtgga
agtgtggggagacaagctagagccatggcagatgaatatgatcaaaatac
attatatgaattatgacaatgtcacagtgagcccattattatgttcagtc
actgtctcgattagggttttactcctgtgaacaagcaccatgaccaaggc
aactctttttttttttttttttttttgattgattgctgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_66495738_66496587
seq2: B6Ng01-216M15.b_41_890 (reverse)

seq1  ATTCCCTC-TCCTCTCCCACCCCATTCTCGAAGTACCTATCACAGGTCAC  49
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCTCTTCCTCTCCCACCCCATTCTCGAAGTACCTATCACAGGTCAC  50

seq1  AATTAAATACTGGCCAAGTTTGGTTGGTGGTCAGTTATCCCCAGATGTAG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAATACTGGCCAAGTTTGGTTGGTGGTCAGTTATCCCCAGATGTAG  100

seq1  TTTCCATGAAGACAGGGCTGTTGTCTCACTTCTGCATCTGAGGTGGAGCG  149
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTTCCATGAAGACAGGGCTG-TGTCTCACTTCTGCATCTGAGGTGGAGCG  149

seq1  CAGCACTTGACACAACCTAGTAGCTCAAGCTCACAATGGAAAGCCAACGG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTTGACACAACCTAGTAGCTCAAGCTCACAATGGAAAGCCAACGG  199

seq1  GAATGTAAAGGGTTGCGGTCCACTGTGGAAAGCAGAAAGACTACACCATC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTAAAGGGTTGCGGTCCACTGTGGAAAGCAGAAAGACTACACCATC  249

seq1  CTCATGGAACATGCTTAACTCTACAGACGGCGTCAACATGCTATAGAGCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGGAACATGCTTAACTCTACAGACGGCGTCAACATGCTATAGAGCT  299

seq1  AAGTCAACATGCTATAGAGATTCTTGCACATATGTTGGTTGTTCCACTAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAACATGCTATAGAGATTCTTGCACATATGTTGGTTGTTCCACTAT  349

seq1  GCACACAGCCAAACGATAGGATCAACCTAGATGCCCATTAACAGAGAAAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACAGCCAAACGATAGGATCAACCTAGATGCCCATTAACAGAGAAAT  399

seq1  CCATAAAGAAAAGGGCATACACAGACTCATTGGAGAAGGAACTAAATGTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAAGAAAAGGGCATACACAGACTCATTGGAGAAGGAACTAAATGTC  449

seq1  ACTTGCAGAAGAGTGGATGGGACCGGGGAGAATGATGTTAATTAAAATAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCAGAAGAGTGGATGGGACCGGGGAGAATGATGTTAATTAAAATAA  499

seq1  ACCAGACTCAAAGACAAACACTTCATTTTTTCTAGTATATAGAATGTAAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGACTCAAAGACAAACACTTCATTTTTTCTAGTATATAGAATGTAAG  549

seq1  TAACATGCAAGCAAAAACAAGACTCTCTGGAGAAAGAGAAGGGGCTGTGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATGCAAGCAAAAACAAGACTCTCTGGAGAAAGAGAAGGGGCTGTGG  599

seq1  GCAGAATATGAGCAAAGTACAATGACATGTATTATGAAAACGTTGCATGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAATATGAGCAAAGTACAATGACATGTATTATGAAAACGTTGCATGA  649

seq1  ATCTTCTATTGCCAGGCATGGCGATGCGCAACGCCTGCCCCACCCCACCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTATTGCCAGGCATGGCGATGCGCAACGCCTGCCCCACCCCACCC  699

seq1  CAAATCCTGGCATTCGAGGGTAGAGGCAGGAAGATCAAGAGTTCAAGTCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCCTGGCATTCGAGGGTAGAGGCAGGAAGATCAAGAGTTCAAGTCC  749

seq1  AGCCTGGGTTAGATGAAATTCCATCTACAGAAAGGAAAAGCAACATTGCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGGTTAGATGAAATTCCATCTACAGAAAGGAAAAGCAACATTGCT  799

seq1  TTGAACACTAAAGAAAAAAAGAAAACAAAAGCAAAAACAAAACCAGAATT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACACTAAAGAAAAAAAGAAAACAAAAGCAAAAACAAAACCAGAATT  849

seq1  C  850
      |
seq2  C  850

seq1: chr5_66377989_66378484
seq2: B6Ng01-216M15.g_68_563

seq1  GAATTCACAGTGGCTATGACCACCTTCACAGGGCCTGCACGAGACTGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGTGGCTATGACCACCTTCACAGGGCCTGCACGAGACTGGGC  50

seq1  CCATCAACAGTGTATTAATGAGTGGAGGTCACGAGGCCCCATCTCCCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAACAGTGTATTAATGAGTGGAGGTCACGAGGCCCCATCTCCCTGA  100

seq1  GGCTCTGTAAGCAGTGAGTGGTTGACTGCAGAATGGAGAGAGGTTTTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTGTAAGCAGTGAGTGGTTGACTGCAGAATGGAGAGAGGTTTTCTT  150

seq1  CAGGGATGTAGCTGCCTGTAAGGTGTCTAAGTTCCTGTAAGTAACCAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGATGTAGCTGCCTGTAAGGTGTCTAAGTTCCTGTAAGTAACCAGCC  200

seq1  CCTCACCTTTGCTTATGTAAGTAACCCTAAAGAAACTTGCAGGGTCATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACCTTTGCTTATGTAAGTAACCCTAAAGAAACTTGCAGGGTCATCA  250

seq1  GAGGAAAAGACAGGAAGTTGGGAGAGGAAGCTGAGAAGGGGAAGGGAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAAAGACAGGAAGTTGGGAGAGGAAGCTGAGAAGGGGAAGGGAGTT  300

seq1  AGTGGAAGTGTGGGGAGACAAGCTAGAGCCATGGCAGATGAATATGATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAAGTGTGGGGAGACAAGCTAGAGCCATGGCAGATGAATATGATCA  350

seq1  AAATACATTATATGAATTATGACAATGTCACAGTGAGCCCATTATTATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACATTATATGAATTATGACAATGTCACAGTGAGCCCATTATTATGT  400

seq1  TCAGTCACTGTCTCGATTAGGGTTTTACTCCTGTGAACAAGCACCATGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCACTGTCTCGATTAGGGTTTTACTCCTGTGAACAAGCACCATGAC  450

seq1  CAAGGCAACTCTTTTTTTTTTTTTTTTTTTTTGATTGATTGCTGTC  496
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCAACTCTTTTTTTTTTTTTTTTTTTTTGATTGATTGCTGTC  496